CsaV3_2G016880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G016880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCentrin
Locationchr2 : 14147054 .. 14152527 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTTTATTTTCTAAAACAAAGTAATTTAGAAAAAAATAGAAAAAATAGAAAAAGAAAAAGAAAAAGAAAAGAGGAAAGAAGGCGGTCCAATGCGAACACTGCCTGATTAAGTTAGACGTTTCAATGGGAACCAATTGTTCTAACATTCAAAGCTTTCGACGTTTGTGTTAGACGTTCGGATTTTCTCTGGATTTCTTCTTCGTGCTGCGGCATCGTCTACTATGGTACGTTGTTTGAATTTCACTTCAAGAATTTCTCAATTTGTTGTTCGATCTTTGTCCTGATCTTGGATTTGATTCGATTTTTGCAGCCATGGGGTCGTTTTTGGTTATTTTAGTCTTCTTATTCTGTTGCATTTTACGCTAGTTTAGGTGAATTGTATGAGTTTTTGATATTTAGAACGTGGGTAGAAGCCGCCTTTGATTTTCATAAGAAATGATGATATGCAGTAAACAGCTAGAAACTGGATTGCTTCTTTTGCCAATTCCTTTGTTTTCAGGTGAAAATTGGGTTTTGATTGTTATGGGTTGTTTTGTTGGAATTTGCAACCGTCTTTGTAGGCAAGCTTATACAGAGGTGTTTCTAGGAAGGAAAAGCCTAAAGGACGTCATGGGTTAACTCCCCAAAAGAAGCAGGAGATTAAGGAGGCTTTTGAATTATTTGACACTGATGGCTCTGGTGTGAAAATTATTATTTCTTGTTTTATGCTTGTTATTGGTTTTTTATGTGTGTGGATGGGGTACTCAGTTGTTAGTCTGTTTTACTTTTGGTCAGGGACTATCGATGCCAAAGAACTCAATGTAGCAATGAGGTATGAATATTTCAATATGCATCGTGGAAGTGGAAGCTAAAAGATTGTAAATTTGAACTTTTGTAACTGATTTTATTTTTGTGGCAGGGCTCTTGGTTTTGAGATGACCGAGGAGGTAACTCTATGCCTCTAGGCCGATTAACGTTGTAAAGTTTTTTTTTTTTTTTTTTTAGCATTTATGCATGCGCCATTTTGAAGGACAAATTATATGGCATTCTAGCATGCATGAATACCATTAGATAAGATCGTCAGAAAACATCAGTTTATTTGTCTTGTGGTACCCACGTTGTTTTTTCAACGTCTTAGGCTAATCTTTTCTTCATTGTTACAATGTGATCAACGTGGTTAATTCCTATTCCCCCATTATTGTGAATGCAAATAGTAAGGGTATAACTTATAAGGACAGTGGTATCTTCTTCAGGGTGAATTGCCTGTTTATTGTGGAGTGAGGACCTTGACTGTCTTATTTTCAACTATGCACAAGTGTTTTAAAAAGCCCTCTCAGGCATGCTCCTAGGCTCAAGGCTTAGGTCTGGTGCCTCGCCGTGAAAAGGCAAGGCTAAAAGATAAGGCATGCATGCCATGGGGGGTTTTACATTATTTTTTAAAATAGTAATGATTAAAGTTTTTTTCCTTTGTTATTAACTAGAAAAATTAAATTTAGCAAGTCTAAACAAAATTTCTAGTGTTAAGAGGACCTTTTTCTTTTCCTTCCATATTTCCACTTCAACTATGCTTTCTCTCCTTATTGTAGTACTTTTATGTATACTGCGCCTCACAAAAAAGGCCTTTGCTTTCTTTTGCCTTGCACTTAAGCCCTAGAAGACTTGTGCTTTATTGCGCCTTGACCTTAAAGAACACTGTCTGCAGCTTCGAAAGACAGATTTTTCTTTTATGGAGAAGGGTATTGTTAGAAAAATTTTGTTGGAGTGAGTGATTGTAATATGTAGCAACTAGTAAGTCTTAAGTTTTGGTATCCTTCACATAATACCCTGTAGTTGGAAGATACGGTTATACAAATTAACAATCAATGCCGTAACTTGTTTGAAAACGAATAATCTAATTACTTTGGATTGAATCCTGACTTTAAGATTTTTTCATGTGATAATTATATTACTGATTGACATTTGACTGATCTCTTGTCGCTCATTCCAGCAAATCAAACAAATGATTGCAGATGTGGACAAAGATGGAAGTGGTGCCATTGATTATGATGAATTTGAATACATGATGACAGCAAAAATTGGAGAGAGAGACACTAAGGAGGAGCTTACGAAAGCATTTGATATTATTGACTATGATAAAAATGTAAGGTTATGATCTTTAATCTTTTAGATGATCAGGATCCAGATGGAGATGGCTATGTTTTCTAAAATATCTGACTGGGAAATTTATTTATTTCTTGTTTTAATGTAAATGCTGTAACTGAGAACAAAAATAGTTGTACCAAAATATATTTATGGAATTTATCAAAATTCAATTTCACATTTAAAGTTTTCTTACAGAACTTTGAAGAAGCTAATTTTCTAAACATTTTGTTATTATAATTGAATTGGCGTTACATTTTCATATTCTTTTTCCTGAATTTAGGGGAAGATATCTGGCAATGACATCAAGCGCATAGCAAAGGAGCTGGGTGAGGTCTTCACTGACAAAGACATTCAAGAGATGATTGATGAGGCTGATCGAGATCGTGAGTCACTTTTACTCTATTTTTTAATCAGGTTTTCTTTTGTGGGGTTAGTTTCATGTTTTATCCATTTCTTGTTTGCACCAAGCAAATTTGTTTCTTGATGGTATATATCTGCATTTGTGATATTTAATTTGATGAAGTGGTCGATCCATCCTTTTACTTAATCTCATTTCATTAATGATCTTACTCGAACAAGATCTGTTCTATAGGTTGTTCAACTGTGTCCTTGAGTTCTAAGAAAAACCCTCATTTCTGTACCCTAGTAAAATCTCCCATTTCCATTTTTTTAAAATTTTTGATAATCGAATGTTGGGTTCCCACCCCTCTTATGTCAGGATGATTCAATAATAAATGTTGCTGCTCAATTAATTAAGCTATGAAATGCCATTAACTCTATGTGTATTATCAATATCTCTACGTGTGATTCGTCGAGACATAAACTTCTCCAACTTTTTTTTTAAGAAAATGGTTGAAATGCATTGAATAGATATGCTCATTTTTATATTCATTATTCCTATTAATGAACTAAATCATATAGTTATATGAGTGAAAGAAAACAGCTTATATAAATAAAAATTAGCAGTCAAAATATCGAGTCTCATTTTCTATGTATATTAAGCAGAAAAATATATAGGTGCAAGAGAGCCTCCTCCCATTATGCTCATGGGACGCTCCTCGCAGTTGGGTAGGGTGATGGGAGACAACAAGAGTTTCTGTTTTATGTTATTGGGAATTTTCCATTTTACCCTAAATCAATTGTTGCCATAAAGCATGTTTTTCATGACAGTATATCTTCAAACTCACTTAGCCAAGGATGCTTTAGTCTTATCTGTTAAAAGGTTGTAAGCCAATACCTACATGAGTAGTAGATCTTGTGATCTTTTCCTATTTAACAAGTTGAGGTCCCGAGTTAATTGAACTATCTTTCCAAGGGAAATTTCGGTATAATATTTCAATAAGCAATGTTGTCTTTGAAAATATTTTTGGAGAGGGATGGATAGTACAGGGTAAGGTTCGATAACTTGACTTGTATATGTATGCATGCATGCATGTGTTCGTGGTGTGTGTGTATAATATTTTCAATGGCAGCAACTTTCATCAATAGAAGTTGAAAAAAAATATGAGGTCATACAAAACACCAAACCCACAAAAAGGGATCCAACTAGAGCAGGAGTCTCCAACTATACAAAATAATGCCCATAAATACTAAAGGTCTTTAAATTCGAAGCATATAGGAAAACATGAAATCTAATAAGGGACCAAAGTCACTAGGATCCCTCTCCAGCTGGCAATTCTCTAGACACTCGGTTGTTCTCCTCATCCCAAAGATCTCACAATGTAGTATTGTTGTGGAGGAGAATAACTGAGTGAAAATCTAATAAGGGAAATTGGGCTAAGGTTGAAACACCAAAAGCATTTGGCTAACAAAGCTTTGTTATGAATCCTTAAATTCCCAATTTCTAACCCCCCAAGGAAACCAACCTCTCAAATACCTCCCATTGGACCAAGTGTGAAAATTTTCTTTCTTCCACCTCTTCCCGAAGGAAATTATGCTTGTGCTTGGGCTTCTCAATAGTCTTACAAACATCAGTTATCACTCTAAAAAGGACAAATAGTTAATAGGGATGCCATTCAAAACAAAATGAATCTAATCAACTCTTCTAGCTATGGGGAATAGCCTTTTTTTTTTTCAAGAGGACAACCTTGTCCTAACTTTGTCCACCACGAAAAACAAATCGCTTTTGTGATACTTTCAAGAGGGAGCTAAGTTAAGAAGAGGGAAAGAAACCAACATCACATCCTACTGCTTATCTCCTACGCTTCTTGTCATTACAATTGAGCCCCATAAACCTGACATTTACTCCTGTTAACTTTCAGCTTAGACATATGTGAGACCTATTCTTCCCATGTATGATTCTCTTTGTGGTTTATCTGAATGTAATTCAATTGGGGTCGTTCCTGTCGTTGTGGTCTTCCTTGTTTGTTTTTCATTTGACATTTACAAATATATAGCTGGTATGGAAGAAAAGCAGTTAACTTGGATTTGTAAATGCAGGTGATGGTGAAGTAAACGTTGATGATTTCTTTAGAATGATGAGGAGGACAACATATGGATCCTAGAGGTCGAAGCAGAATGTGTATCATCCACGCAAAGTATGAGCATGGTTAGTACAGTTGTGAAAATAAGAGACATGCCAAAGTATTATGTTTAGGATGTTTTCATTGTGTAACTCGTTTCTGTTTGTAAGATAATATTTTTTAAATTTCAGAGTGAGTTCGAATATATTTTGTTATTGTTTGAATTGTGTAATGCTAGTGATTGACATAGTGCACAAATTTATTGAGAAAGCCATTAAAATAAAGAGGGAGCTGGTAAATGTGTACAAAACCATTTTGAAGAAAGCACTGGAAGAGAGGGGGCGCGAAAGAAGTTCTGTATGATGTGATAAAATCGTTTTGGGGAAACTAATAGAGAGAGATGGACATATGATAGATGGGGAAAAGGCTGGCCAATATAATCACAAAGGGAAGGAGTAGAAGGGAGCATAGAGTAGAACCTAACTATAGGGAGTTTGAGACTGACCTCGATCTTAAAAGTTGCTTATTAAAATTTAAGACTGTCAGTTGGTGCGTTTAGGTTGGTCATGGTCGTGTGGCTATTTAGATTGGAATGGCTACCACCATCTATTGTGTTACAAATGTCATAAGGTACCTTGGCACTAGACTTTTGTGGTTTGGAGAGAGAGGCCATCCTGAGGCACTATACTTCATAGTGTTAATAGCAAAAAGGGGCTGTTTGGGGAGGGGAGGACTATTTTAGTCATTTTCAAGTTTGGGGGAGGAATATGTTTAATTCCCTTGTTCCTTCTTAATTCTCTCTCTTTCTTACTCTCAATCATTCTCATTCTTCAATCAATAATTTTTCATTTCCATCCAACTTTTTTCTTTTTCTAAACTATTAATA

mRNA sequence

ATGGCAAGCTTATACAGAGGTGTTTCTAGGAAGGAAAAGCCTAAAGGACGTCATGGGTTAACTCCCCAAAAGAAGCAGGAGATTAAGGAGGCTTTTGAATTATTTGACACTGATGGCTCTGGGACTATCGATGCCAAAGAACTCAATGTAGCAATGAGGGCTCTTGGTTTTGAGATGACCGAGGAGCAAATCAAACAAATGATTGCAGATGTGGACAAAGATGGAAGTGGTGCCATTGATTATGATGAATTTGAATACATGATGACAGCAAAAATTGGAGAGAGAGACACTAAGGAGGAGCTTACGAAAGCATTTGATATTATTGACTATGATAAAAATGGGAAGATATCTGGCAATGACATCAAGCGCATAGCAAAGGAGCTGGGTGAGGTCTTCACTGACAAAGACATTCAAGAGATGATTGATGAGGCTGATCGAGATCGTGATGGTGAAGTAAACGTTGATGATTTCTTTAGAATGATGAGGAGGACAACATATGGATCCTAG

Coding sequence (CDS)

ATGGCAAGCTTATACAGAGGTGTTTCTAGGAAGGAAAAGCCTAAAGGACGTCATGGGTTAACTCCCCAAAAGAAGCAGGAGATTAAGGAGGCTTTTGAATTATTTGACACTGATGGCTCTGGGACTATCGATGCCAAAGAACTCAATGTAGCAATGAGGGCTCTTGGTTTTGAGATGACCGAGGAGCAAATCAAACAAATGATTGCAGATGTGGACAAAGATGGAAGTGGTGCCATTGATTATGATGAATTTGAATACATGATGACAGCAAAAATTGGAGAGAGAGACACTAAGGAGGAGCTTACGAAAGCATTTGATATTATTGACTATGATAAAAATGGGAAGATATCTGGCAATGACATCAAGCGCATAGCAAAGGAGCTGGGTGAGGTCTTCACTGACAAAGACATTCAAGAGATGATTGATGAGGCTGATCGAGATCGTGATGGTGAAGTAAACGTTGATGATTTCTTTAGAATGATGAGGAGGACAACATATGGATCCTAG

Protein sequence

MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIKQMIADVDKDGSGAIDYDEFEYMMTAKIGERDTKEELTKAFDIIDYDKNGKISGNDIKRIAKELGEVFTDKDIQEMIDEADRDRDGEVNVDDFFRMMRRTTYGS
Homology
[Close]
BLAST of CsaV3_2G016880 vs. NCBI nr
Match: XP_004148035.1 (PREDICTED: probable calcium-binding protein CML20 [Cucumis sativus] >KGN62011.1 hypothetical protein Csa_2G286440 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. NCBI nr
Match: XP_008457834.1 (PREDICTED: probable calcium-binding protein CML20 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. NCBI nr
Match: XP_022149540.1 (probable calcium-binding protein CML20 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 5.3e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          MASLYRGVSRKEKPKGRHGLTPQKKQEI+EAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIREAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. NCBI nr
Match: XP_022928039.1 (probable calcium-binding protein CML20 [Cucurbita moschata] >XP_022971671.1 probable calcium-binding protein CML20 [Cucurbita maxima] >XP_023513001.1 probable calcium-binding protein CML20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 6.9e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          MASLYRG SRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MASLYRGASRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. NCBI nr
Match: XP_022948033.1 (probable calcium-binding protein CML20 [Cucurbita moschata] >XP_023534694.1 probable calcium-binding protein CML20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.8 bits (299), Expect = 9.0e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          MASLYRGVSRKEKPKGRHGL PQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MASLYRGVSRKEKPKGRHGLNPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. TAIR10
Match: AT3G50360.1 (centrin2)

HSP 1 Score: 107.5 bits (267), Expect = 8.4e-24
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          M+S+YR VSRKEKP+  HGLT QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MSSIYRTVSRKEKPRRHHGLTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. TAIR10
Match: AT4G37010.2 (centrin 2)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 2  ASLYRGVSRKEKPKGR-HGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM 60
          A L RG+    KPKG+ +GLT QK++EI+E F+LFD DGSG+IDA ELNVAMR+LGFEM
Sbjct: 9  AQLRRGL----KPKGKTYGLTNQKRREIREIFDLFDIDGSGSIDASELNVAMRSLGFEM 63

[Close]
BLAST of CsaV3_2G016880 vs. TAIR10
Match: AT1G12310.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-05
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0 

Query: 16 GRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 57
          G+ GL+  +   +KEAF LFDTDG G I   EL + MR+LG
Sbjct: 2  GKDGLSDDQVSSMKEAFMLFDTDGDGKIAPSELGILMRSLG 42

[Close]
BLAST of CsaV3_2G016880 vs. TAIR10
Match: AT2G27030.3 (calmodulin 5)

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = 0 

Query: 20 LTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 57
          LT  +  E KEAF LFD DG G I  KEL   MR+LG
Sbjct: 5  LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG 41

[Close]
BLAST of CsaV3_2G016880 vs. TAIR10
Match: AT3G56800.1 (calmodulin 3)

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = 0 

Query: 20 LTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 57
          LT  +  E KEAF LFD DG G I  KEL   MR+LG
Sbjct: 5  LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG 41

[Close]
BLAST of CsaV3_2G016880 vs. Swiss-Prot
Match: sp|O82659|CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana OX=3702 GN=CML20 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          M+S+YR VSRKEKP+  HGLT QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MSSIYRTVSRKEKPRRHHGLTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. Swiss-Prot
Match: sp|P41210|CATR_ATRNU (Caltractin OS=Atriplex nummularia OX=3553 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-18
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 10 RKEKPKGR-HGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 61
          RK+KP+GR HGLT QK+QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 8  RKDKPRGRHHGLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 59

[Close]
BLAST of CsaV3_2G016880 vs. Swiss-Prot
Match: sp|Q7F0J0|CML13_ORYSJ (Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica OX=39947 GN=CML13 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 3  SLYRGVSRKEKPKGR--HGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 61
          S  +G +R+E+P+G   HGLT QK+QEIKEAF+LFDTD SGTIDAKELNVAMRALGFEMT
Sbjct: 2  STVKGQTRRERPRGARPHGLTKQKRQEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMT 61

[Close]
BLAST of CsaV3_2G016880 vs. Swiss-Prot
Match: sp|P05434|CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 9  SRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGF 58
          +R+++ KGR GLT ++KQEI+EAF+LFDTDGSGTIDAKEL VAMRALGF
Sbjct: 11 ARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGF 59

[Close]
BLAST of CsaV3_2G016880 vs. Swiss-Prot
Match: sp|O23184|CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana OX=3702 GN=CML19 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 2  ASLYRGVSRKEKPKGR-HGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM 60
          A L RG+    KPKG+ +GLT QK++EI+E F+LFD DGSG+IDA ELNVAMR+LGFEM
Sbjct: 5  AQLRRGL----KPKGKTYGLTNQKRREIREIFDLFDIDGSGSIDASELNVAMRSLGFEM 59

[Close]
BLAST of CsaV3_2G016880 vs. TrEMBL
Match: tr|A0A1S3C6K4|A0A1S3C6K4_CUCME (probable calcium-binding protein CML20 OS=Cucumis melo OX=3656 GN=LOC103497421 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. TrEMBL
Match: tr|A0A0A0LPZ5|A0A0A0LPZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G286440 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

[Close]
BLAST of CsaV3_2G016880 vs. TrEMBL
Match: tr|M5VRD0|M5VRD0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G133900 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGR-HGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM 60
          MASLYRGVSRKEKP+GR HGL  QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM
Sbjct: 1  MASLYRGVSRKEKPRGRHHGLPTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM 60

[Close]
BLAST of CsaV3_2G016880 vs. TrEMBL
Match: tr|A0A251NAZ5|A0A251NAZ5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G133900 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGR-HGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM 60
          MASLYRGVSRKEKP+GR HGL  QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM
Sbjct: 1  MASLYRGVSRKEKPRGRHHGLPTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM 60

[Close]
BLAST of CsaV3_2G016880 vs. TrEMBL
Match: tr|R0HI10|R0HI10_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10018135mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 1  MASLYRGVSRKEKPKGRHGLTPQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60
          M+SLYRGVSRKEKP+  HGLT QK+QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT
Sbjct: 1  MSSLYRGVSRKEKPRRHHGLTTQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 60

The following BLAST results are available for this feature:
BLAST of CsaV3_2G016880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148035.12.4e-24100.00PREDICTED: probable calcium-binding protein CML20 [Cucumis sativus] >KGN62011.1 ... [more]
XP_008457834.12.4e-24100.00PREDICTED: probable calcium-binding protein CML20 [Cucumis melo][more]
XP_022149540.15.3e-2498.33probable calcium-binding protein CML20 [Momordica charantia][more]
XP_022928039.16.9e-2498.33probable calcium-binding protein CML20 [Cucurbita moschata] >XP_022971671.1 prob... [more]
XP_022948033.19.0e-2498.33probable calcium-binding protein CML20 [Cucurbita moschata] >XP_023534694.1 prob... [more]
BLAST of CsaV3_2G016880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50360.18.4e-2488.33centrin2[more]
AT4G37010.21.3e-1366.10centrin 2[more]
AT1G12310.13.9e-0551.22Calcium-binding EF-hand family protein[more]
AT2G27030.31.5e-0456.76calmodulin 5[more]
AT3G56800.11.5e-0456.76calmodulin 3[more]
BLAST of CsaV3_2G016880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82659|CML20_ARATH1.5e-2288.33Probable calcium-binding protein CML20 OS=Arabidopsis thaliana OX=3702 GN=CML20 ... [more]
sp|P41210|CATR_ATRNU3.0e-1890.38Caltractin OS=Atriplex nummularia OX=3553 PE=2 SV=1[more]
sp|Q7F0J0|CML13_ORYSJ2.5e-1775.00Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|P05434|CATR_CHLRE1.7e-1375.51Caltractin OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1[more]
sp|O23184|CML19_ARATH2.4e-1266.10Calcium-binding protein CML19 OS=Arabidopsis thaliana OX=3702 GN=CML19 PE=1 SV=1[more]
BLAST of CsaV3_2G016880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C6K4|A0A1S3C6K4_CUCME1.6e-24100.00probable calcium-binding protein CML20 OS=Cucumis melo OX=3656 GN=LOC103497421 P... [more]
tr|A0A0A0LPZ5|A0A0A0LPZ5_CUCSA1.6e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G286440 PE=4 SV=1[more]
tr|M5VRD0|M5VRD0_PRUPE3.6e-2193.44Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G133900 PE=4 SV=1[more]
tr|A0A251NAZ5|A0A251NAZ5_PRUPE3.6e-2193.44Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G133900 PE=4 SV=1[more]
tr|R0HI10|R0HI10_9BRAS4.7e-2190.00Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10018135mg PE=4 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030048 actin filament-based movement
biological_process GO:0051645 Golgi localization
biological_process GO:0051646 mitochondrion localization
biological_process GO:0060151 peroxisome localization
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G016880.1CsaV3_2G016880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 63..91
e-value: 4.6E-7
score: 39.5
coord: 136..164
e-value: 3.4E-5
score: 33.3
coord: 27..55
e-value: 3.4E-8
score: 43.2
coord: 100..128
e-value: 0.0028
score: 26.9
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 99..162
e-value: 1.6E-11
score: 44.4
coord: 25..88
e-value: 1.1E-16
score: 60.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 59..94
score: 14.96
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 96..131
score: 12.393
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 132..167
score: 12.756
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 23..58
score: 16.857
IPR002048EF-hand domainCDDcd00051EFhcoord: 27..89
e-value: 2.59946E-19
score: 76.8177
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 92..167
e-value: 1.5E-21
score: 78.4
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 6..91
e-value: 9.3E-29
score: 101.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR23050:SF167SUBFAMILY NOT NAMEDcoord: 19..167
NoneNo IPR availablePANTHERPTHR23050CALCIUM BINDING PROTEINcoord: 19..167
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 72..84
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 145..157
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 36..48
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 109..121
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 14..163

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G016880CSPI02G14330Wild cucumber (PI 183967)cpicucB080
CsaV3_2G016880Cucsa.366810Cucumber (Gy14) v1cgycucB557
CsaV3_2G016880CmaCh02G005560Cucurbita maxima (Rimu)cmacucB0697
CsaV3_2G016880CmaCh20G011590Cucurbita maxima (Rimu)cmacucB0652
CsaV3_2G016880CmoCh20G011860Cucurbita moschata (Rifu)cmocucB0638
CsaV3_2G016880CmoCh02G005650Cucurbita moschata (Rifu)cmocucB0692
CsaV3_2G016880Cp4.1LG16g00610Cucurbita pepo (Zucchini)cpecucB0335
CsaV3_2G016880Cp4.1LG05g11290Cucurbita pepo (Zucchini)cpecucB0890
CsaV3_2G016880CsGy2G014210Cucumber (Gy14) v2cgybcucB064
CsaV3_2G016880Carg11631Silver-seed gourdcarcucB1103
CsaV3_2G016880Cla020185Watermelon (97103) v1cucwmB153
CsaV3_2G016880MELO3C020899Melon (DHL92) v3.5.1cucmeB102
CsaV3_2G016880ClCG02G012810Watermelon (Charleston Gray)cucwcgB134
CsaV3_2G016880Lsi10G005690Bottle gourd (USVL1VR-Ls)cuclsiB104
CsaV3_2G016880MELO3C020899.2Melon (DHL92) v3.6.1cucmedB090
CsaV3_2G016880Cla97C02G038490Watermelon (97103) v2cucwmbB120
CsaV3_2G016880Bhi10G001769Wax gourdcucwgoB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G016880Wax gourdcucwgoB188
CsaV3_2G016880Cucumber (Chinese Long) v3cuccucB093
CsaV3_2G016880Silver-seed gourdcarcucB0842
CsaV3_2G016880Silver-seed gourdcarcucB1105
CsaV3_2G016880Cucumber (Gy14) v2cgybcucB264
CsaV3_2G016880Cucurbita maxima (Rimu)cmacucB0706
CsaV3_2G016880Cucurbita maxima (Rimu)cmacucB0777
CsaV3_2G016880Cucurbita maxima (Rimu)cmacucB1007
CsaV3_2G016880Cucurbita moschata (Rifu)cmocucB0682
CsaV3_2G016880Cucurbita moschata (Rifu)cmocucB0685
CsaV3_2G016880Watermelon (97103) v2cucwmbB105
CsaV3_2G016880Cucurbita moschata (Rifu)cmocucB0991
CsaV3_2G016880Cucurbita pepo (Zucchini)cpecucB0592
CsaV3_2G016880Cucurbita pepo (Zucchini)cpecucB0884
CsaV3_2G016880Melon (DHL92) v3.5.1cucmeB098
CsaV3_2G016880Melon (DHL92) v3.6.1cucmedB095