CsaV3_2G015360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G015360
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionribosome-binding factor A family protein
Locationchr2 : 12835919 .. 12838502 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCATCTTCTTCTGCAGCAAATTCATCCCCAATTCTACTTTTCGCCATTGAAATTCTTACAATCTTCACCATTTCCCTCTCAATTTCAAGCTTCCCGCCCATGCGTTTACTCCCCAACTTCTGTCACCCTTCTTCCTCCACCTCCGGTGATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGTAGGATTAAAATGGTGGCTAAGCAGATTCAAAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTATCTCTCGTCTCTCACTACCATTACTGATGTTGAAGTCTCTGCCGACTTGCAGGTATTGAGAGATTGCTTAAATTGAAGAGCTGGGTTTTATTTACTTTTTGCTGTTCTTGCAGAATTAGGTTTTATTTTTTCTTTTGTGCTCTGTTGTCGTGAAATTGGAATTGAAGCTAAGGGATAGTAAATATTTGCATTTGTACAAGAGAAGATATTCTATCAAGTTTTGACTTTTTAAATTGGTATACTACTCAATTACTGTCTTGGATTGTGTGTATAGTGTAGTTTAGCCACTTGGAAATAATTAGGAGGCTTCAGAAGCTCATTTTCAAATGTTTGGTTGAAGACATTTTTGATATTATTATCTTTGAAGCATAAATGAAGTTATAAAAAAATTAACTTAAAGATTTAACTTATTGAGGTACATATTGAAATTGAAGAGAACCCACCTTGAGTAATGCTTGAAAGTTACTTTAGCCTGGATAAATATTTCGGAACAACGATGCTCTTCGAAGTATTCCTGGGAAGTTATGCTGACATCAACCGCTGCTAAACCATTGCTTCTCAAGCCAGAACTGATTCTACTATAGAGACCAATGAAAGAAGTTCATTGATATCTTTTTTTTTTGTCATAAGGCAACTGATCCGGATTGCATCTGCATTTGAACTTGCAGTGCAGTTGTGTAAGTTGTGGCCATTTCTTTTTATTGATGTTTGAACAAATTTAACATTGAGTGAGCTCCCTACAATATAGGATTTTCCTTTTTTGTCTTATTTTAATCAAAATATTTCTTAAACTGAGGTTCAAATATTAATATGTTACACCTTTGACCGTTGGAATAAGATATGTTAAAGGGATAAAAGCCATGGCAGTGCAATAAAAACCCTTTGCTCTTGATTGAGCTGTTTTGGTGTGCTCTTTTTAGACTGTAGTAAGTCTCTTGACTTTCAATCTTGCTATAAATGCGTTTGTATGCTCCTCGTTACTTGATTGATTTGATGTCAAATGCAACATAGAGATTTTTTCATAAAATAGTGAACATGTACCTTTTTATTGTTGTGAAAATTTGAGTACTATGAAGGTCAGACATTATGTTTGCCATTTAACTCTTCACCTTCCATGAGTTATCAGTTTTTTTTTTTTTTTTTTTTGTTATTTACAATTTAGGTATCATGTGCATGTGATGTGAATATGCTAATCTCAACTTACACTCAGATGGAACAATAAATACCTTTTCATATTCATTTTGGTGTATATGTTGGCTGCTTTGCCCCATGCTTGAGCTGATAAGTAATGGTTTTGCTCTATTATATGAATACAAACAAGCAGGTGGTTAAAGTATACGTATCAGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATCGCTGGGTTGAAGTCTAAAGCAAAGTATGTTCGAAGTGTATTGGGAAAACGCATGAAGCTTCGACTAACTCCTGAGATTCGCTTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAAGTAACAAACTAACATTTTATGTTCTTGCTTCTTAATTCTTATATAAATTTTCTTGCCGTGGCCAGGACCAGTTTCAATTATTCTTAAGAATTCCTTCCACAAGATGTTTTCATCTCATATTCTTCATGGTTTTCCAATGCATGTGTTCGTCTTACAAACTTCATGTTTATCTCCTATTTCCTGTTGAAATATTCCTGGGAAGCTCTAGAAATAATCATATTTTTGGCTGCTATTTCCTACAACAAATGCTTTGAAATGACAAATTTACCAGTTAGAAAAAGAGAGATGGTCTTATCATTTGTGAGAGCAATGGGTCATCTTCTTAGTAAGGGCTCAAACGGTCATGGTCATATGAAAACTAGTAATTGTAGATTAGATTGACTTTTAAAAAGTACAACGCAATTAGCCAGGGTCATATGCATGGTTAGGTAGGTTCCTCTTGGGTTTTTCAAGTTTCCAGTGTGTATTTTGTCTCATTATAATTCGAGCATTAGTCTCTTTTCTTTCATCAATGAAAAGTCCCGTTTCCTTGCCTGTGCGAATTTTCAAGTTTTTGCATCCCTATAATTTAACAACTGGAAGATTACTTCAAGATTCTTTTCTGTACTGATTTGGTTTGAACTTTCCCAGGTAATTGCCATATTGGATCGAATCAAGGACAAAAAGAAGGATACCGTTGATGAAGACTTCGACCAACCTGAACTATCTGATGCTCTTGATGACGACAGGGATTGGAAAGGTGACGATGCTGATGAAGACATAATATATGTACAATAG

mRNA sequence

ATGACGCATCTTCTTCTGCAGCAAATTCATCCCCAATTCTACTTTTCGCCATTGAAATTCTTACAATCTTCACCATTTCCCTCTCAATTTCAAGCTTCCCGCCCATGCGTTTACTCCCCAACTTCTGTCACCCTTCTTCCTCCACCTCCGGTGATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGTAGGATTAAAATGGTGGCTAAGCAGATTCAAAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTATCTCTCGTCTCTCACTACCATTACTGATGTTGAAGTCTCTGCCGACTTGCAGGTGGTTAAAGTATACGTATCAGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATCGCTGGGTTGAAGTCTAAAGCAAAGTATGTTCGAAGTGTATTGGGAAAACGCATGAAGCTTCGACTAACTCCTGAGATTCGCTTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGAATCAAGGACAAAAAGAAGGATACCGTTGATGAAGACTTCGACCAACCTGAACTATCTGATGCTCTTGATGACGACAGGGATTGGAAAGGTGACGATGCTGATGAAGACATAATATATGTACAATAG

Coding sequence (CDS)

ATGACGCATCTTCTTCTGCAGCAAATTCATCCCCAATTCTACTTTTCGCCATTGAAATTCTTACAATCTTCACCATTTCCCTCTCAATTTCAAGCTTCCCGCCCATGCGTTTACTCCCCAACTTCTGTCACCCTTCTTCCTCCACCTCCGGTGATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGTAGGATTAAAATGGTGGCTAAGCAGATTCAAAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTATCTCTCGTCTCTCACTACCATTACTGATGTTGAAGTCTCTGCCGACTTGCAGGTGGTTAAAGTATACGTATCAGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATCGCTGGGTTGAAGTCTAAAGCAAAGTATGTTCGAAGTGTATTGGGAAAACGCATGAAGCTTCGACTAACTCCTGAGATTCGCTTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGAATCAAGGACAAAAAGAAGGATACCGTTGATGAAGACTTCGACCAACCTGAACTATCTGATGCTCTTGATGACGACAGGGATTGGAAAGGTGACGATGCTGATGAAGACATAATATATGTACAATAG

Protein sequence

MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ
Homology
[Close]
BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_004151338.1 (PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis sativus] >KGN61860.1 hypothetical protein Csa_2G252090 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 2.1e-116
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 

Query: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60
           MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM
Sbjct: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60

Query: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120
           ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV
Sbjct: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120

Query: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180
           VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA
Sbjct: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180

Query: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225

[Close]
BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_008457619.1 (PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >XP_016902146.1 PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo])

HSP 1 Score: 407.5 bits (1046), Expect = 2.9e-110
Identity = 215/228 (94.30%), Postives = 221/228 (96.93%), Query Frame = 0 

Query: 1   MTHLLLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATI 60
           M HLLLQQIHPQFYFSPLKF   LQSSPFPSQFQASRPC YSP+SV LLPPPPVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120
           RCMANSRR+KMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           VIAILDRIKDKKKDT+DEDFD+PELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]
BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_022948118.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 185/224 (82.59%), Postives = 198/224 (88.39%), Query Frame = 0 

Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ +  PLK    L SS FPSQF AS PC  SP SV L+   PVMRGATIRCMA
Sbjct: 4   LLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIRCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMV+KQIQRELS+MLLTDKVLQFAILPEASLGADKYLSSLTTITDVE+S+DLQVV
Sbjct: 64  NSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           LDRIKD+K +  DED +Q ELSDA  DDRDW+ DDADEDIIYVQ
Sbjct: 184 LDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]
BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_023534592.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.8 bits (852), Expect = 9.1e-88
Identity = 182/224 (81.25%), Postives = 197/224 (87.95%), Query Frame = 0 

Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ +  PLK    L SS FPSQF AS PC  SP SV ++   PVMRG TIRCMA
Sbjct: 4   LLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVAVVRRRPVMRGVTIRCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMV+KQIQRELS+MLLTDKVLQFAILPEASLGADKYLSSLTTITDVE+S+DLQVV
Sbjct: 64  NSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           LDRIKD+K +  DED +Q ELSD+  DDRDW+ DDADEDIIYVQ
Sbjct: 184 LDRIKDEKNNIDDEDMEQSELSDSPQDDRDWEEDDADEDIIYVQ 227

[Close]
BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_023006992.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 329.7 bits (844), Expect = 7.7e-87
Identity = 180/224 (80.36%), Postives = 197/224 (87.95%), Query Frame = 0 

Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ +  PLK    L SS FPSQF  S PC  SP SV L+   PVMRGATI+CMA
Sbjct: 4   LLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMV+KQIQRELS+MLLTDKVLQFAILPEASLGADKYLSSLTTITDVE+S+DLQVV
Sbjct: 64  NSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           LDRIKD+K +  DED ++ ELSDA  DDRDW+ D+ADEDIIY+Q
Sbjct: 184 LDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

[Close]
BLAST of CsaV3_2G015360 vs. TAIR10
Match: AT4G34730.1 (ribosome-binding factor A family protein)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-63
Identity = 131/170 (77.06%), Postives = 148/170 (87.06%), Query Frame = 0 

Query: 56  TIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVS 115
           T+RCMAN RR+KMVAKQI RELSDMLLTD VLQ A+LPEA+LGAD+YLSSLTTI+DVEVS
Sbjct: 50  TVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVS 109

Query: 116 ADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERG 175
            DLQVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERG
Sbjct: 110 NDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERG 169

Query: 176 SRVIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           SRVIAILD+IK +K         + E SD+ +DD+DW+ DD DEDIIYV+
Sbjct: 170 SRVIAILDKIKAEK----GSGEGKTEPSDSTEDDQDWEVDDPDEDIIYVK 215

[Close]
BLAST of CsaV3_2G015360 vs. Swiss-Prot
Match: sp|O65693|RBFA_ARATH (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 240.4 bits (612), Expect = 2.0e-62
Identity = 131/170 (77.06%), Postives = 148/170 (87.06%), Query Frame = 0 

Query: 56  TIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVS 115
           T+RCMAN RR+KMVAKQI RELSDMLLTD VLQ A+LPEA+LGAD+YLSSLTTI+DVEVS
Sbjct: 50  TVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVS 109

Query: 116 ADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERG 175
            DLQVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERG
Sbjct: 110 NDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERG 169

Query: 176 SRVIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           SRVIAILD+IK +K         + E SD+ +DD+DW+ DD DEDIIYV+
Sbjct: 170 SRVIAILDKIKAEK----GSGEGKTEPSDSTEDDQDWEVDDPDEDIIYVK 215

[Close]
BLAST of CsaV3_2G015360 vs. Swiss-Prot
Match: sp|Q3M9Q8|RBFA_ANAVT (Ribosome-binding factor A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rbfA PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 61/150 (40.67%), Postives = 96/150 (64.00%), Query Frame = 0 

Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA +RR+  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K+YVS++G E  K   +AGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 180 AILDRIKDKKKDTVDEDFDQPELSDALDDD 210
            +L+++++ +  ++D   D P   D+LD+D
Sbjct: 121 TLLNKLENAR--SLD---DIPSADDSLDED 133

[Close]
BLAST of CsaV3_2G015360 vs. Swiss-Prot
Match: sp|Q8Z0M8|RBFA_NOSS1 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 60/150 (40.00%), Postives = 93/150 (62.00%), Query Frame = 0 

Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA +RR+  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K+YVS++G E  K   +AGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 180 AILDRIKDKKKDTVDEDFDQPELSDALDDD 210
            +L+++++ +        D P   D+LD+D
Sbjct: 121 TLLNKLENARSPD-----DIPSADDSLDED 133

[Close]
BLAST of CsaV3_2G015360 vs. Swiss-Prot
Match: sp|B8HWS1|RBFA_CYAP4 (Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rbfA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-21
Identity = 54/137 (39.42%), Postives = 89/137 (64.96%), Query Frame = 0 

Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA  RR+  VA+ I+RE+S ML+            + +  D+  S + ++TDV++S DLQ
Sbjct: 1   MATDRRVARVAELIKREISQMLM------------SGIKDDRVGSGMVSVTDVDLSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K++VS++G E  +   +AGLK+   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVL 120

Query: 180 AILDRIKDKKKDTVDED 197
           ++L+R+ ++++   D D
Sbjct: 121 SLLNRLSEERQKNADLD 125

[Close]
BLAST of CsaV3_2G015360 vs. Swiss-Prot
Match: sp|Q93LL7|RBFA_NOSP7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-20
Identity = 59/145 (40.69%), Postives = 88/145 (60.69%), Query Frame = 0 

Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA +RR+  VA+ I+RE+S MLL              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K+YVS++G +  K   +AGLKS   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 120

Query: 180 AILDRIKDKK--------KDTVDED 197
           A+L ++   +        +D  DED
Sbjct: 121 ALLSQLNHDRPPENLLAVEDNTDED 133

[Close]
BLAST of CsaV3_2G015360 vs. TrEMBL
Match: tr|A0A0A0LIX7|A0A0A0LIX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 1.4e-116
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 

Query: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60
           MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM
Sbjct: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60

Query: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120
           ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV
Sbjct: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120

Query: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180
           VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA
Sbjct: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180

Query: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225

[Close]
BLAST of CsaV3_2G015360 vs. TrEMBL
Match: tr|A0A1S4E1P3|A0A1S4E1P3_CUCME (probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497269 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.9e-110
Identity = 215/228 (94.30%), Postives = 221/228 (96.93%), Query Frame = 0 

Query: 1   MTHLLLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATI 60
           M HLLLQQIHPQFYFSPLKF   LQSSPFPSQFQASRPC YSP+SV LLPPPPVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120
           RCMANSRR+KMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           VIAILDRIKDKKKDT+DEDFD+PELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]
BLAST of CsaV3_2G015360 vs. TrEMBL
Match: tr|A0A1U8J4T3|A0A1U8J4T3_GOSHI (probable ribosome-binding factor A, chloroplastic OS=Gossypium hirsutum OX=3635 GN=LOC107903713 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.2e-66
Identity = 138/173 (79.77%), Postives = 158/173 (91.33%), Query Frame = 0 

Query: 54  GATIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVE 113
           GAT++CMAN RR+KMV+KQI+RELSDMLLTDKVLQ+AILPEA+LGAD+YLSSLTTI+DVE
Sbjct: 39  GATVKCMANPRRVKMVSKQIRRELSDMLLTDKVLQYAILPEAALGADRYLSSLTTISDVE 98

Query: 114 VSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFE 173
           VSADLQVVKVYVSVFGDERGK++A+AGLKSKAKYVRS LGKRMKLRLTPEIRFIEDES E
Sbjct: 99  VSADLQVVKVYVSVFGDERGKEIALAGLKSKAKYVRSELGKRMKLRLTPEIRFIEDESLE 158

Query: 174 RGSRVIAILDRIKDKKKDTVDEDF-DQPELSDALDDDRDWKGDDADEDIIYVQ 226
           RGSRVIAILD+IK +KK   DED+ ++ E S +  DDRDW+ DD DEDIIYV+
Sbjct: 159 RGSRVIAILDKIKAEKKTLADEDYEEEAESSVSAQDDRDWESDDPDEDIIYVK 211

[Close]
BLAST of CsaV3_2G015360 vs. TrEMBL
Match: tr|A0A2N9G4V0|A0A2N9G4V0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25568 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.8e-66
Identity = 151/226 (66.81%), Postives = 175/226 (77.43%), Query Frame = 0 

Query: 1   MTHLLL--QQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIR 60
           M HL+     +HP F          +  P+ +      ++S   + LL   P + G+TIR
Sbjct: 1   MPHLVFHPHHLHPPFLSXXXXXXXRTQNPTAW------IHSARPLGLLSLKPTI-GSTIR 60

Query: 61  CMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMAN RR+KMVAKQI+RELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTI+DVEVS DL
Sbjct: 61  CMANPRRVKMVAKQIRRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTISDVEVSGDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGK +A+AGLK+KAKYVRS LG+RMKLRLTPEIRFIEDES ERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKGLALAGLKAKAKYVRSELGRRMKLRLTPEIRFIEDESLERGSRV 180

Query: 181 IAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYV 225
           IAILDRIK++KK    ED ++ +L  A  DDRDW+GDD DEDIIYV
Sbjct: 181 IAILDRIKNEKKPGESEDEEEFDLPGASQDDRDWEGDDPDEDIIYV 219

[Close]
BLAST of CsaV3_2G015360 vs. TrEMBL
Match: tr|A0A1Q3AX33|A0A1Q3AX33_CEPFO (RBFA domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03809 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 6.5e-66
Identity = 138/171 (80.70%), Postives = 156/171 (91.23%), Query Frame = 0 

Query: 55  ATIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEV 114
           ++I+CMAN RR+KMVAKQIQRELSDMLLTDKVLQFA+LPEASLGAD+YLSSLT+I+DVEV
Sbjct: 59  SSIKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEASLGADRYLSSLTSISDVEV 118

Query: 115 SADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFER 174
           S+DLQVVKVYVSVFGD+RGK+VAIAGLKSKAKYVRS LGKRMKLRLTPEIRFIEDES ER
Sbjct: 119 SSDLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFIEDESLER 178

Query: 175 GSRVIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           GSRVIAILD+IK +K DT  ++  QPE S+   DD+DW+ DD DEDIIYVQ
Sbjct: 179 GSRVIAILDKIKAEKDDTNSQNEKQPESSNLSRDDKDWEDDDPDEDIIYVQ 229

The following BLAST results are available for this feature:
BLAST of CsaV3_2G015360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151338.12.1e-116100.00PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis sativus] >... [more]
XP_008457619.12.9e-11094.30PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >XP_... [more]
XP_022948118.16.3e-8982.59probable ribosome-binding factor A, chloroplastic [Cucurbita moschata][more]
XP_023534592.19.1e-8881.25probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_023006992.17.7e-8780.36probable ribosome-binding factor A, chloroplastic [Cucurbita maxima][more]
BLAST of CsaV3_2G015360 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34730.11.1e-6377.06ribosome-binding factor A family protein[more]
BLAST of CsaV3_2G015360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O65693|RBFA_ARATH2.0e-6277.06Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
sp|Q3M9Q8|RBFA_ANAVT1.0e-2140.67Ribosome-binding factor A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ... [more]
sp|Q8Z0M8|RBFA_NOSS11.0e-2140.00Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
sp|B8HWS1|RBFA_CYAP48.5e-2139.42Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
sp|Q93LL7|RBFA_NOSP71.1e-2040.69Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ... [more]
BLAST of CsaV3_2G015360 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIX7|A0A0A0LIX7_CUCSA1.4e-116100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1[more]
tr|A0A1S4E1P3|A0A1S4E1P3_CUCME1.9e-11094.30probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1U8J4T3|A0A1U8J4T3_GOSHI2.2e-6679.77probable ribosome-binding factor A, chloroplastic OS=Gossypium hirsutum OX=3635 ... [more]
tr|A0A2N9G4V0|A0A2N9G4V0_FAGSY3.8e-6666.81Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25568 PE=3 SV=1[more]
tr|A0A1Q3AX33|A0A1Q3AX33_CEPFO6.5e-6680.70RBFA domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_038... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR023799RbfA_dom_sf
IPR020053Ribosome-bd_factorA_CS
IPR015946KH_dom-like_a/b
IPR000238RbfA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0048481 plant ovule development
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0009058 biosynthetic process
biological_process GO:0016043 cellular component organization
biological_process GO:0009791 post-embryonic development
biological_process GO:0048608 reproductive structure development
biological_process GO:0044702 single organism reproductive process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G015360.1CsaV3_2G015360.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000238Ribosome-binding factor APFAMPF02033RBFAcoord: 65..182
e-value: 2.8E-27
score: 95.1
IPR000238Ribosome-binding factor ATIGRFAMTIGR00082TIGR00082coord: 60..186
e-value: 2.4E-23
score: 80.9
IPR000238Ribosome-binding factor APANTHERPTHR33515FAMILY NOT NAMEDcoord: 60..195
IPR000238Ribosome-binding factor APRODOMPD007327coord: 69..169
e-value: 4.0E-45
score: 456.0
IPR000238Ribosome-binding factor AHAMAPMF_00003RbfAcoord: 64..182
score: 22.035
IPR015946K homology domain-like, alpha/betaGENE3DG3DSA:3.30.300.20coord: 60..177
e-value: 1.6E-28
score: 101.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..219
IPR020053Ribosome-binding factor A, conserved sitePROSITEPS01319RBFAcoord: 148..169
IPR023799Ribosome-binding factor A domain superfamilySUPERFAMILYSSF89919Ribosome-binding factor A, RbfAcoord: 60..185

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G015360CSPI02G12800Wild cucumber (PI 183967)cpicucB080
CsaV3_2G015360Cucsa.109070Cucumber (Gy14) v1cgycucB138
CsaV3_2G015360CmaCh02G003570Cucurbita maxima (Rimu)cmacucB0701
CsaV3_2G015360CmoCh02G003590Cucurbita moschata (Rifu)cmocucB0687
CsaV3_2G015360Cp4.1LG16g02780Cucurbita pepo (Zucchini)cpecucB0334
CsaV3_2G015360Cp4.1LG05g13030Cucurbita pepo (Zucchini)cpecucB0879
CsaV3_2G015360CsGy2G012890Cucumber (Gy14) v2cgybcucB064
CsaV3_2G015360Carg27203Silver-seed gourdcarcucB0863
CsaV3_2G015360Cla016615Watermelon (97103) v1cucwmB166
CsaV3_2G015360ClCG11G003770Watermelon (Charleston Gray)cucwcgB120
CsaV3_2G015360Lsi10G004260Bottle gourd (USVL1VR-Ls)cuclsiB104
CsaV3_2G015360Bhi10G001541Wax gourdcucwgoB187
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G015360Cucumber (Chinese Long) v3cuccucB070
CsaV3_2G015360Cucumber (Chinese Long) v3cuccucB098
CsaV3_2G015360Silver-seed gourdcarcucB0346
CsaV3_2G015360Silver-seed gourdcarcucB0463
CsaV3_2G015360Cucumber (Gy14) v2cgybcucB318
CsaV3_2G015360Cucumber (Gy14) v1cgycucB522
CsaV3_2G015360Cucurbita maxima (Rimu)cmacucB0019
CsaV3_2G015360Cucurbita maxima (Rimu)cmacucB0527
CsaV3_2G015360Cucurbita maxima (Rimu)cmacucB0604
CsaV3_2G015360Cucurbita maxima (Rimu)cmacucB0651
CsaV3_2G015360Cucurbita moschata (Rifu)cmocucB0007
CsaV3_2G015360Cucurbita moschata (Rifu)cmocucB0513
CsaV3_2G015360Cucurbita moschata (Rifu)cmocucB0590
CsaV3_2G015360Cucurbita moschata (Rifu)cmocucB0637
CsaV3_2G015360Cucurbita pepo (Zucchini)cpecucB0062
CsaV3_2G015360Cucurbita pepo (Zucchini)cpecucB0289
CsaV3_2G015360Cucurbita pepo (Zucchini)cpecucB0680
CsaV3_2G015360Cucurbita pepo (Zucchini)cpecucB0961
CsaV3_2G015360Wild cucumber (PI 183967)cpicucB137
CsaV3_2G015360Wild cucumber (PI 183967)cpicucB384
CsaV3_2G015360Bottle gourd (USVL1VR-Ls)cuclsiB134
CsaV3_2G015360Bottle gourd (USVL1VR-Ls)cuclsiB109
CsaV3_2G015360Melon (DHL92) v3.5.1cucmeB106
CsaV3_2G015360Melon (DHL92) v3.6.1cucmedB099
CsaV3_2G015360Watermelon (Charleston Gray)cucwcgB140
CsaV3_2G015360Watermelon (97103) v1cucwmB142
CsaV3_2G015360Watermelon (97103) v1cucwmB160
CsaV3_2G015360Watermelon (97103) v2cucwmbB115
CsaV3_2G015360Watermelon (97103) v2cucwmbB126
CsaV3_2G015360Wax gourdcucwgoB161