CmoCh02G003590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G003590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribosome-binding factor A, putative
Location	Cmo_Chr02 : 1807861 .. 1812160 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGACGTCCGGTAATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGTCCAAGCAGATTCAGAGGGAGCTTTCCAATATGCTTCTTACCGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTACCTTTCGTCTCTCACTACCATCACCGATGTTGAAATCTCTAGCGACTTGCAGGTATTTTGAGAGATTTTTCAAATTGAAGAGCTGAGAACAGTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCAAATTGAAGAGCTGAGAACTTTTTTTTTTTTTTTTTTTTTTTTCTCTATAGTGAATTGCAGAATATTTTGTTTCTTTTTCGTTATGGAACTGGGAAAGAATTGAAGATTAAGGCTGATTCTATGCTTGAATATGATAGTAAGAAAGGTACCTGAGTTTTTGAACTTGCCGTGGCTGTTGTGTAAATGGTGGTTGTTTTTTTTCTTATTGATGTTTGAACAGATTTAACATTGCATGAACAGCTTATATCTTAGAATTTGCCTTTTGGTCTCATGGTAACAGAGGTTTAGATGTTGATATGTTACACCTTTTGTGTGTCAGAATAAGAAATGTTAATGGGATAAAAGCCATGACTGTGCCCTTTTGGTCTACTCTCAGCCATCACTGAGCTGGGTAGTGGCTTTACTCTTTGCTTGACAGTAGTAAGCCTCTTTGCTTTCAATGTGAGATCCCACATCAATTGGAGAGAGGAATGAGTGTCAGTGAAAGACACTAGGTCCCAAGGGGGTGGATTGTGAGATCTCACATCGGCTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGCAGACGCTTTTTAAAAATCTTGAGGGGAAGCTCAAAAGAGAAAGCCTAAAAAGGACAATATCTGCTAGCGGCGGGCTTGGGCTGTTACATTCAATCTTGCCCAGAAATCAGTTTTCACTGCTCAGCCTCTCGATTGTCGCCAATGTGAAATGTAACATCGAGATTATTTCTTGGAAGAGTGTACATAATACTTTTTATTGTTTTGAAATTTTCAGTACTATGAAGTTTAAACCTTGTTTCACCATTTAGATCGTTCACCTTTCATGAGTTCACAAGTTAGTTTGTTATTTAAATGATACAATATAGGTAACCATGTTGGTGTGAAAATGTCACTCTAAATTTAAATTGTCCAGGAATACAATTAAAGAGCCTTTTCTTTTCATTTTAGTTCATATGTTGGCTGCCTTTATCAATAGCTGATAAAGTCATTGTTATATGCTATTGTATGAATTTGGACACAGGTGGTTAAAGTATATGTATCCGTCTTTGGTGATGAAAGAGGAAAGGATATTGCTATGGCTGGGTTGAAATCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGGTTAACTCCTGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAAGTAACAATTTATGTTCTTGCTTATATAAATTTTCTTGCTGTGACTGGAGACTAGTTCGATTATCTTTAAGAATTACTTCCAAAAGTGTTATTCATCTCATATTCTTCATTGTTTCCCAATGCTTGCATTTATGTCATGCAAACCTCGAGTTTATCGTGTGAGACCTCGCATCGGTTGGGGTGGAGAACGAAACATTTATAAGGGTGCAGAAATCTCTTTCTAGCAGACGCGTTTTATAAACCTTGAGGGAAAGCCCAAATAGGACAATATTTGCTAGTAGTGGGTTTGGGCCATTACAGTTGGTATTAGAGCAAGACACCGGGTGATGTACCAGCGAGGAGGTAGGTAGGCTCCAAAAGGGGTAGATTGGAGGGTCCCACATCTATTGGAGAAGGGAATAAGTACCACTGAGGACACTGGACCCTGGAGGGGGGTGGATTGTGAGATCCCATATTGGTTGGAGAGCGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGTCTTGAGGGGAAGTCTGAAAGGGAAATCCCAAAGAAGACAGTATCTACTAGCGGTGGGCTTGGACCGTTACATATTGACTATTTTTTTGTTGAATTATCCTTGGGAAGTTCTAGAAATATCATTGTTTTGGCAGCTATTTTCTACAAAAAGTTCTTGGAAATGATAAATTTTCCTGTAACAGTAGGAGAGACGGTTTTGTGTGAGAGCAATTGGTCATCTTAGTTATAGGGGCTTGAGATGTTGGGCTCAAAGGTCCTGGGTTTACGTCTCTAGCCATAAAACTTAAAAGTTTACAATGTTTGTTGTCTTCGAAACTGATCATGGGGTGAGCAAAGCAGCTCGGGGTTAGTGAAATGCTTCGGTAGTTCAGTTATCGAGGGAGATAACAAATTACAGCACAAACACTCATCGAGTCGAGCATAGCTCATTCGATAAAGCACCCGTTATCATTACAAAGGTCAAGACTCCGTTTTGAAACTCATCCAGTCATTGCCTAATGCAAATTTTCAATTTTCACATCCCTATAATTTCAGCCACTGGAAGATTACTTCAATGTTCTTTCCTGTACTATTTTTGTTTGAACTTTACCAGGTAATTGCCATATTGGATCGGATCAAAGACGAAAAAAACAATATCGATGATGAAGACATGGAGCAATCTGAACTATCTGATGCTCCTCAAGACGACCGGGATTGGGAAGAGGATGATGCTGATGAAGACATAATATACGTACAATAGGTCGTCACTGTTCCAGTTCTTGTTCAACTTACGCTCATCTGTGCTGAGGCATCGGTTTGCCATCGCAGGTTCGTTATACTACGAGTTTCATCCATCTGGGTTTAACTTTATCGTCCATCTTAGTAACTTTATTATGGATTCTCTTGGATGATATAATTTTGAAGCCACCATTGTTATTTGCAGAGCAAGAAGTGAAGGTAAAAATGGTTCAACACCAAGCTCTGCCTCTGATTCAAAATGATGTTGCTCATGATTCTCATTATGCAACCCATAATCTATTATCACCATATATAATAGATAGAAATTTCCTATTCTATCTTCTGATTCATCTGTTCGTAGTTGCATGGGGACGATAATATTGATATCAAATACATATTGCATAAGAATTTAAATGTGAATGTCGACATCTATGTCGTTTCGTTATAATGTTTGTCGTGATATGACCCGTAATATTGGTATGGAATCTTAGGAGCTTTCTATGTTGAGTTGGG

mRNA sequence

TCGACGTCCGGTAATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGTCCAAGCAGATTCAGAGGGAGCTTTCCAATATGCTTCTTACCGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTACCTTTCGTCTCTCACTACCATCACCGATGTTGAAATCTCTAGCGACTTGCAGAATATTTTGTTTCTTTTTCGTTATGGAACTGGGAAAGAATTGAAGATTAAGGCTGATTCTATGCTTGAATATGATAGTAAGAAAGATCGTTCACCTTTCATGAGTTCACAAGTGGTTAAAGTATATGTATCCGTCTTTGGTGATGAAAGAGGAAAGGATATTGCTATGGCTGGGTTGAAATCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGGTTAACTCCTGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAAGACGAAAAAAACAATATCGATGATGAAGACATGGAGCAATCTGAACTATCTGATGCTCCTCAAGACGACCGGGATTGGGAAGAGGATGATGCTGATGAAGACATAATATACGTCGTCACTGTTCCAGTTCTTGTTCAACTTACGCTCATCTGTGCTGAGGCATCGGTTTGCCATCGCAGAGCAAGAAGTGAAGGTAAAAATGGTTCAACACCAAGCTCTGCCTCTGATTCAAAATGATGTTGCTCATGATTCTCATTATGCAACCCATAATCTATTATCACCATATATAATAGATAGAAATTTCCTATTCTATCTTCTGATTCATCTGTTCGTAGTTGCATGGGGACGATAATATTGATATCAAATACATATTGCATAAGAATTTAAATGTGAATGTCGACATCTATGTCGTTTCGTTATAATGTTTGTCGTGATATGACCCGTAATATTGGTATGGAATCTTAGGAGCTTTCTATGTTGAGTTGGG

Coding sequence (CDS)

ATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGTCCAAGCAGATTCAGAGGGAGCTTTCCAATATGCTTCTTACCGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTACCTTTCGTCTCTCACTACCATCACCGATGTTGAAATCTCTAGCGACTTGCAGAATATTTTGTTTCTTTTTCGTTATGGAACTGGGAAAGAATTGAAGATTAAGGCTGATTCTATGCTTGAATATGATAGTAAGAAAGATCGTTCACCTTTCATGAGTTCACAAGTGGTTAAAGTATATGTATCCGTCTTTGGTGATGAAAGAGGAAAGGATATTGCTATGGCTGGGTTGAAATCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGGTTAACTCCTGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAAGACGAAAAAAACAATATCGATGATGAAGACATGGAGCAATCTGAACTATCTGATGCTCCTCAAGACGACCGGGATTGGGAAGAGGATGATGCTGATGAAGACATAATATACGTCGTCACTGTTCCAGTTCTTGTTCAACTTACGCTCATCTGTGCTGAGGCATCGGTTTGCCATCGCAGAGCAAGAAGTGAAGGTAAAAATGGTTCAACACCAAGCTCTGCCTCTGATTCAAAATGA

Homology

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BLAST of CmoCh02G003590 vs. Swiss-Prot
Match: RBFA_ARATH (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-34
Identity = 79/106 (74.53%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 105 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 164
           QVVKVYVSVFGD+RGKD+A+AGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERGSRV
Sbjct: 113 QVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRV 172

Query: 165 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
           IAILD+IK EK + +     ++E SD+ +DD+DWE DD DEDIIYV
Sbjct: 173 IAILDKIKAEKGSGEG----KTEPSDSTEDDQDWEVDDPDEDIIYV 214

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BLAST of CmoCh02G003590 vs. Swiss-Prot
Match: RBFA_MICAN (Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) GN=rbfA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-13
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 105 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 164
           Q  K++VS++G+E  K   MAGLK+ A +VR  LG+R++LR TPE+ F+ED S ERG R+
Sbjct: 48  QHAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRM 107

Query: 165 IAILDRIKDEKNNIDDEDMEQ 186
           + +LD IK ++   DD+  E+
Sbjct: 108 LHLLDHIKTDRPPEDDDSEEE 128

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BLAST of CmoCh02G003590 vs. Swiss-Prot
Match: RBFA_ANAVT (Ribosome-binding factor A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rbfA PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = 1


Query: 46  LGADKYLSSLTTITDVEISSDLQNILFLFRYGTGKELKIKADSMLEYDSKKDRSPFMSSQ 105
           +  ++ +S +  +   E+S  L N +   R GTG        S+ + D   D       Q
Sbjct: 1   MATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMV------SVTDVDVSGDL------Q 60

Query: 106 VVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 165
             K+YVS++G E  K   MAGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 166 AILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEED 202
            +L+++++ ++           L D P  D   +ED
Sbjct: 121 TLLNKLENARS-----------LDDIPSADDSLDED 133

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BLAST of CmoCh02G003590 vs. Swiss-Prot
Match: RBFA_TRIEI (Ribosome-binding factor A OS=Trichodesmium erythraeum (strain IMS101) GN=rbfA PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-12
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 1


Query: 105 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 164
           Q  KV+VS++G +  +   MAGL+S   YVRS LGKR+++R TPE+ F+ED S ERG+ +
Sbjct: 48  QHAKVFVSIYGSDEVRSQTMAGLRSATGYVRSELGKRIRMRRTPEVIFVEDRSLERGTEI 107

Query: 165 IAILDRIKDEKNNIDDEDMEQSE 188
           +++L+++  E+   + ED+   E
Sbjct: 108 LSLLNKLSQERQQQEIEDITHKE 130

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BLAST of CmoCh02G003590 vs. Swiss-Prot
Match: RBFA_NOSP7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rbfA PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-12
Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 1


Query: 46  LGADKYLSSLTTITDVEISSDLQNILFLFRYGTGKELKIKADSMLEYDSKKDRSPFMSSQ 105
           +  ++ +S +  +   E+S  L N +   R GTG        S+ + D   D       Q
Sbjct: 1   MATNRRVSRVAELIKREVSQMLLNGIKDDRVGTGMV------SVTDVDVSGDL------Q 60

Query: 106 VVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 165
             K+YVS++G +  K   MAGLKS   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 120

Query: 166 AILDRIKDEK---------NNIDDEDMEQSE 188
           A+L ++  ++         +N D++D   SE
Sbjct: 121 ALLSQLNHDRPPENLLAVEDNTDEDDESFSE 139

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BLAST of CmoCh02G003590 vs. TrEMBL
Match: G7J7U0_MEDTR (Ribosome-binding factor A OS=Medicago truncatula GN=MTR_3g117600 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-44
Identity = 118/217 (54.38%), Postives = 145/217 (66.82%), Query Frame = 1


Query: 5   TIRCMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEIS 64
           TI+CMAN RRVKMV+KQI+RELS+ML+TD VLQFA+LPEASLGA                
Sbjct: 50  TIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGA---------------- 109

Query: 65  SDLQNILFLFRYGTGKELKIKADSMLEYDSKKDRSPFMSSQVVKVYVSVFGDERGKDIAM 124
                 L+L    T  +++I AD                 QV +VYVSVFGDERGK++AM
Sbjct: 110 -----DLYLSSVTTITDVEITADL----------------QVARVYVSVFGDERGKEVAM 169

Query: 125 AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDEK--------- 184
           AGLKSKAKYVR  LG+RMKLRLTPEIRF+EDESFERGSRVIAILD+IK+EK         
Sbjct: 170 AGLKSKAKYVRGELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQ 228

Query: 185 --NNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
             ++++ +D EQ   S + +DD DWE++D +E IIYV
Sbjct: 230 LDSSVNGDDTEQLN-SSSDEDDADWEDEDPEEGIIYV 228

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BLAST of CmoCh02G003590 vs. TrEMBL
Match: A0A103XTI6_CYNCS (K homology domain-like, alpha/beta OS=Cynara cardunculus var. scolymus GN=Ccrd_001268 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.9e-41
Identity = 107/196 (54.59%), Postives = 132/196 (67.35%), Query Frame = 1


Query: 2   RGATIRCMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDV 61
           R   + CMA  RRVKMV+KQIQRELS+MLLTD+VLQ+AILPEA+LGAD+YLSSLTTI+DV
Sbjct: 58  RNRVVICMAKERRVKMVAKQIQRELSDMLLTDQVLQYAILPEAALGADRYLSSLTTISDV 117

Query: 62  EISS------------------------------DLQNILFLFR---YGTGKELKIKADS 121
           E+SS                              D+++   +F     G  K  +  A  
Sbjct: 118 EVSSDLQVTSFPTSASSHTFLSPQVAIALELKTEDVKHGHLIFDARDLGEAKPARKLAGR 177

Query: 122 MLEYDSKKDRSPFMSSQVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTP 165
           + E + ++       ++VVKVYVSVFGDERGK++A++GLKSKAKYVRS LGKRMKLRLTP
Sbjct: 178 IFEEEKQR------LTRVVKVYVSVFGDERGKEVAISGLKSKAKYVRSQLGKRMKLRLTP 237

[Close]

BLAST of CmoCh02G003590 vs. TrEMBL
Match: A0A0A0LIX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252090 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.8e-40
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 105 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 164
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 119 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 178

Query: 165 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
           IAILDRIKD+K +  DED +Q ELSDA  DDRDW+ DDADEDIIYV
Sbjct: 179 IAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYV 224

[Close]

BLAST of CmoCh02G003590 vs. TrEMBL
Match: M5VMR2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011113mg PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 94/153 (61.44%), Postives = 112/153 (73.20%), Query Frame = 1


Query: 62  EISSDLQNILF---LFRYGTGKELKIKADSMLE-YDSKKDRSPFMSSQVVKVYVSVFGDE 121
           +I  +L ++L    + +Y    E+ + AD  L    +  D       QVVKVYVSVFGDE
Sbjct: 70  QIRRELSDMLLTDNVLQYAILPEVALGADRYLSSLTTISDVEVSTDLQVVKVYVSVFGDE 129

Query: 122 RGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDEKNN 181
           RGK++A+AGLKSKAKYVR  LGKRMKLRLTPEIRFIEDES ERGSRVIAILD+IK+EK +
Sbjct: 130 RGKEVALAGLKSKAKYVRGELGKRMKLRLTPEIRFIEDESLERGSRVIAILDKIKNEKKD 189

Query: 182 IDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
            D +D EQ E S+APQDD DWE DD DEDIIY+
Sbjct: 190 PDIQDEEQLESSEAPQDDTDWEGDDPDEDIIYI 222

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BLAST of CmoCh02G003590 vs. TrEMBL
Match: B9RG62_RICCO (Ribosome-binding factor A, putative OS=Ricinus communis GN=RCOM_1451430 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-35
Identity = 94/153 (61.44%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 62  EISSDLQNILF---LFRYGTGKELKIKADSMLE-YDSKKDRSPFMSSQVVKVYVSVFGDE 121
           +I  +L ++L    + +Y    E  + AD  L    +  D       QVVKVYVSVFGD+
Sbjct: 69  QIQRELSDMLLTDKVLQYAILPEAALGADKYLSSLTTISDVEVSTDLQVVKVYVSVFGDD 128

Query: 122 RGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDEKNN 181
           RGK++A+AGLK+KAKYVRS LG+RMKLRLTPEIRFIEDESFERGSRV+AILD+IK EK N
Sbjct: 129 RGKEVAIAGLKAKAKYVRSELGRRMKLRLTPEIRFIEDESFERGSRVLAILDKIKAEKEN 188

Query: 182 IDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
              ED E SE SD+PQDDRDWE DD DE IIYV
Sbjct: 189 TGSED-ELSESSDSPQDDRDWEGDDPDEGIIYV 220

[Close]

BLAST of CmoCh02G003590 vs. TAIR10
Match: AT4G34730.1 (AT4G34730.1 ribosome-binding factor A family protein)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-35
Identity = 79/106 (74.53%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 105 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 164
           QVVKVYVSVFGD+RGKD+A+AGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERGSRV
Sbjct: 113 QVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRV 172

Query: 165 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
           IAILD+IK EK + +     ++E SD+ +DD+DWE DD DEDIIYV
Sbjct: 173 IAILDKIKAEKGSGEG----KTEPSDSTEDDQDWEVDDPDEDIIYV 214

[Close]

BLAST of CmoCh02G003590 vs. NCBI nr
Match: gi|3096942|emb|CAA18852.1| (putative protein [Arabidopsis thaliana])

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 132/214 (61.68%), Postives = 155/214 (72.43%), Query Frame = 1


Query: 5   TIRCMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEIS 64
           T+RCMAN RRVKMV+KQI RELS+MLLTD VLQ A+LPEA+LGAD+YLSSLTTI+DVE+S
Sbjct: 15  TVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVS 74

Query: 65  SDLQNILFLFRYGTGKELKIKADSMLEYDSKKDRSPFMSSQVVKVYVSVFGDERGKDIAM 124
           +DLQ    + R    K L                       VVKVYVSVFGD+RGKD+A+
Sbjct: 75  NDLQ----VMRNPNWKLL---------------------CNVVKVYVSVFGDDRGKDVAI 134

Query: 125 AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR--------VIAILDRIKDEKN 184
           AGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERGSR        VIAILD+IK EK 
Sbjct: 135 AGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRKLNWRLFQVIAILDKIKAEKG 194

Query: 185 NIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
           + +     ++E SD+ +DD+DWE DD DEDIIYV
Sbjct: 195 SGEG----KTEPSDSTEDDQDWEVDDPDEDIIYV 199

[Close]

BLAST of CmoCh02G003590 vs. NCBI nr
Match: gi|357467461|ref|XP_003604015.1| (ribosome-binding factor A [Medicago truncatula])

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 118/217 (54.38%), Postives = 145/217 (66.82%), Query Frame = 1


Query: 5   TIRCMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEIS 64
           TI+CMAN RRVKMV+KQI+RELS+ML+TD VLQFA+LPEASLGA                
Sbjct: 50  TIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGA---------------- 109

Query: 65  SDLQNILFLFRYGTGKELKIKADSMLEYDSKKDRSPFMSSQVVKVYVSVFGDERGKDIAM 124
                 L+L    T  +++I AD                 QV +VYVSVFGDERGK++AM
Sbjct: 110 -----DLYLSSVTTITDVEITADL----------------QVARVYVSVFGDERGKEVAM 169

Query: 125 AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDEK--------- 184
           AGLKSKAKYVR  LG+RMKLRLTPEIRF+EDESFERGSRVIAILD+IK+EK         
Sbjct: 170 AGLKSKAKYVRGELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQ 228

Query: 185 --NNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
             ++++ +D EQ   S + +DD DWE++D +E IIYV
Sbjct: 230 LDSSVNGDDTEQLN-SSSDEDDADWEDEDPEEGIIYV 228

[Close]

BLAST of CmoCh02G003590 vs. NCBI nr
Match: gi|976909535|gb|KVH96635.1| (K homology domain-like, alpha/beta [Cynara cardunculus var. scolymus])

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 107/196 (54.59%), Postives = 132/196 (67.35%), Query Frame = 1


Query: 2   RGATIRCMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDV 61
           R   + CMA  RRVKMV+KQIQRELS+MLLTD+VLQ+AILPEA+LGAD+YLSSLTTI+DV
Sbjct: 58  RNRVVICMAKERRVKMVAKQIQRELSDMLLTDQVLQYAILPEAALGADRYLSSLTTISDV 117

Query: 62  EISS------------------------------DLQNILFLFR---YGTGKELKIKADS 121
           E+SS                              D+++   +F     G  K  +  A  
Sbjct: 118 EVSSDLQVTSFPTSASSHTFLSPQVAIALELKTEDVKHGHLIFDARDLGEAKPARKLAGR 177

Query: 122 MLEYDSKKDRSPFMSSQVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTP 165
           + E + ++       ++VVKVYVSVFGDERGK++A++GLKSKAKYVRS LGKRMKLRLTP
Sbjct: 178 IFEEEKQR------LTRVVKVYVSVFGDERGKEVAISGLKSKAKYVRSQLGKRMKLRLTP 237

[Close]

BLAST of CmoCh02G003590 vs. NCBI nr
Match: gi|449467253|ref|XP_004151338.1| (PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 6.9e-40
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 105 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 164
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 119 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 178

Query: 165 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
           IAILDRIKD+K +  DED +Q ELSDA  DDRDW+ DDADEDIIYV
Sbjct: 179 IAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYV 224

[Close]

BLAST of CmoCh02G003590 vs. NCBI nr
Match: gi|659115568|ref|XP_008457619.1| (PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 9.9e-39
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 1


Query: 105 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 164
           QVVKVYVSVFGDE+GKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSRV
Sbjct: 122 QVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSRV 181

Query: 165 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYV 211
           IAILDRIKD+K +  DED ++ ELSDA  DDRDW+ DDADEDIIYV
Sbjct: 182 IAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYV 227

The following BLAST results are available for this feature:

BLAST of CmoCh02G003590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBFA_ARATH	4.3e-34	74.53	Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana GN=At4...	[more]
RBFA_MICAN	7.1e-13	46.91	Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) GN=rbfA PE...	[more]
RBFA_ANAVT	1.2e-12	33.97	Ribosome-binding factor A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ...	[more]
RBFA_TRIEI	2.1e-12	42.17	Ribosome-binding factor A OS=Trichodesmium erythraeum (strain IMS101) GN=rbfA PE...	[more]
RBFA_NOSP7	2.7e-12	34.44	Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]

BLAST of CmoCh02G003590 vs. TrEMBL


Match Name	E-value	Identity	Description
G7J7U0_MEDTR	1.1e-44	54.38	Ribosome-binding factor A OS=Medicago truncatula GN=MTR_3g117600 PE=3 SV=1	[more]
A0A103XTI6_CYNCS	1.9e-41	54.59	K homology domain-like, alpha/beta OS=Cynara cardunculus var. scolymus GN=Ccrd_0...	[more]
A0A0A0LIX7_CUCSA	4.8e-40	86.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252090 PE=3 SV=1	[more]
M5VMR2_PRUPE	1.4e-36	61.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011113mg PE=3 SV=1	[more]
B9RG62_RICCO	2.1e-35	61.44	Ribosome-binding factor A, putative OS=Ricinus communis GN=RCOM_1451430 PE=3 SV=...	[more]

BLAST of CmoCh02G003590 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34730.1	2.4e-35	74.53	ribosome-binding factor A family protein	[more]

BLAST of CmoCh02G003590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|3096942\|emb\|CAA18852.1\|	1.4e-53	61.68	putative protein [Arabidopsis thaliana]	[more]
gi\|357467461\|ref\|XP_003604015.1\|	1.6e-44	54.38	ribosome-binding factor A [Medicago truncatula]	[more]
gi\|976909535\|gb\|KVH96635.1\|	2.8e-41	54.59	K homology domain-like, alpha/beta [Cynara cardunculus var. scolymus]	[more]
gi\|449467253\|ref\|XP_004151338.1\|	6.9e-40	86.79	PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis sativus]	[more]
gi\|659115568\|ref\|XP_008457619.1\|	9.9e-39	84.91	PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000238	RbfA
IPR015946	KH_dom-like_a/b
IPR020053	Ribosome-bd_factorA_CS
IPR023799	RbfA_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0006364	rRNA processing
biological_process	GO:0044702	single organism reproductive process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0048481	plant ovule development
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003590.1	CmoCh02G003590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000238	Ribosome-binding factor A	PRODOM	PD007327		coord: 18..155 score: 1.0
IPR000238	Ribosome-binding factor A	HAMAP	MF_00003	RbfA	coord: 10..175 score: 1
IPR000238	Ribosome-binding factor A	PFAM	PF02033	RBFA	coord: 105..168 score: 4.1
IPR000238	Ribosome-binding factor A	TIGRFAMs	TIGR00082	TIGR00082	coord: 105..173 score: 1.2
IPR015946	K homology domain-like, alpha/beta	GENE3D	G3DSA:3.30.300.20		coord: 8..68 score: 2.3E-31coord: 106..162 score: 2.3
IPR020053	Ribosome-binding factor A, conserved site	PROSITE	PS01319	RBFA	coord: 134..155 scor
IPR023799	Ribosome-binding factor A domain	unknown	SSF89919	Ribosome-binding factor A, RbfA	coord: 9..71 score: 4.71E-6coord: 105..171 score: 3.01
None	No IPR available	PANTHER	PTHR33515	FAMILY NOT NAMED	coord: 107..211 score: 1.6E-41coord: 4..69 score: 1.6
None	No IPR available	PANTHER	PTHR33515:SF1	RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED	coord: 107..211 score: 1.6E-41coord: 4..69 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G003590	Cucsa.109070	Cucumber (Gy14) v1	cgycmoB0253
CmoCh02G003590	CmaCh02G003570	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G003590	Cla016615	Watermelon (97103) v1	cmowmB603
CmoCh02G003590	Csa2G252090	Cucumber (Chinese Long) v2	cmocuB577
CmoCh02G003590	ClCG11G003770	Watermelon (Charleston Gray)	cmowcgB515
CmoCh02G003590	CSPI02G12800	Wild cucumber (PI 183967)	cmocpiB582
CmoCh02G003590	Lsi10G004260	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G003590	Cp4.1LG05g13030	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G003590	CsaV3_2G015360	Cucumber (Chinese Long) v3	cmocucB0687
CmoCh02G003590	Bhi10G001541	Wax gourd	cmowgoB0736
CmoCh02G003590	CsGy2G012890	Cucumber (Gy14) v2	cgybcmoB220
CmoCh02G003590	Carg27203	Silver-seed gourd	carcmoB1115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G003590	Silver-seed gourd	carcmoB0436
CmoCh02G003590	Silver-seed gourd	carcmoB0585
CmoCh02G003590	Cucumber (Chinese Long) v3	cmocucB0757
CmoCh02G003590	Watermelon (97103) v2	cmowmbB587
CmoCh02G003590	Watermelon (97103) v2	cmowmbB592
CmoCh02G003590	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh02G003590	Cucurbita moschata (Rifu)	cmocmoB404
CmoCh02G003590	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G003590	Wild cucumber (PI 183967)	cmocpiB644
CmoCh02G003590	Cucumber (Chinese Long) v2	cmocuB633
CmoCh02G003590	Melon (DHL92) v3.5.1	cmomeB552
CmoCh02G003590	Watermelon (Charleston Gray)	cmowcgB530
CmoCh02G003590	Watermelon (97103) v1	cmowmB580
CmoCh02G003590	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G003590	Bottle gourd (USVL1VR-Ls)	cmolsiB545
CmoCh02G003590	Cucumber (Gy14) v2	cgybcmoB944
CmoCh02G003590	Melon (DHL92) v3.6.1	cmomedB631