CsaV3_2G013290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G013290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 10933300 .. 10933643 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGAGGGCATCGACGAAGGTAAAGAATGGCGTCGGCAAAAGTTCTCCCATCGCAATTCTGCATGTCAGAATGATTGTCGGGAAACCCGCATTGGGATATCCATTCCTGACGAGCAAAGATCAAAGCATCGCGAATTCCTGTCCCCCGACATCTCTTTTACAGACGACGGAATCACGTCGAAGAAACTGCACTCCCAATGTCAGCATGTGACATCGGGCATAGGACTCTGTCGACGTATCTTCAGGCGTCAAAAGAAGAATTATCTCAACATTACCTAGCAAAACTTCTCTTCGATGTGCTCAAGATGCGTTGGGGAACACTGCTATTTCCTGACCGCTAG

mRNA sequence

ATGCTAGAGGGCATCGACGAAGGTAAAGAATGGCGTCGGCAAAAGTTCTCCCATCGCAATTCTGCATGTCAGAATGATTGTCGGGAAACCCGCATTGGGATATCCATTCCTGACGAGCAAAGATCAAAGCATCGCGAATTCCTACGACGGAATCACGTCGAAGAAACTGCACTCCCAATGTCAGCATGTGACATCGGGCATAGGACTCTGTCGACGTATCTTCAGGCGTCAAAAGAAGAATTATCTCAACATTACCTAGCAAAACTTCTCTTCGATGTGCTCAAGATGCGTTGGGGAACACTGCTATTTCCTGACCGCTAG

Coding sequence (CDS)

ATGCTAGAGGGCATCGACGAAGGTAAAGAATGGCGTCGGCAAAAGTTCTCCCATCGCAATTCTGCATGTCAGAATGATTGTCGGGAAACCCGCATTGGGATATCCATTCCTGACGAGCAAAGATCAAAGCATCGCGAATTCCTACGACGGAATCACGTCGAAGAAACTGCACTCCCAATGTCAGCATGTGACATCGGGCATAGGACTCTGTCGACGTATCTTCAGGCGTCAAAAGAAGAATTATCTCAACATTACCTAGCAAAACTTCTCTTCGATGTGCTCAAGATGCGTTGGGGAACACTGCTATTTCCTGACCGCTAG

Protein sequence

MLEGIDEGKEWRRQKFSHRNSACQNDCRETRIGISIPDEQRSKHREFLRRNHVEETALPMSACDIGHRTLSTYLQASKEELSQHYLAKLLFDVLKMRWGTLLFPDR
Homology
[Close]
BLAST of CsaV3_2G013290 vs. NCBI nr
Match: KGN61651.1 (hypothetical protein Csa_2G213960 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 8.2e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MLEGIDEGKEWRRQKFSHRNSACQNDCRETRIGISIPDEQRSKHREFLRRNHVEETALPM 60
           MLEGIDEGKEWRRQKFSHRNSACQNDCRETRIGISIPDEQRSKHREFLRRNHVEETALPM
Sbjct: 1   MLEGIDEGKEWRRQKFSHRNSACQNDCRETRIGISIPDEQRSKHREFLRRNHVEETALPM 60

Query: 61  SACDIGHRTLSTYLQASKEELSQHYLAKLLFDVLKMRWGTLLFPDR 107
           SACDIGHRTLSTYLQASKEELSQHYLAKLLFDVLKMRWGTLLFPDR
Sbjct: 61  SACDIGHRTLSTYLQASKEELSQHYLAKLLFDVLKMRWGTLLFPDR 106

[Close]
BLAST of CsaV3_2G013290 vs. TrEMBL
Match: tr|A0A0A0LNS2|A0A0A0LNS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G213960 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.4e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MLEGIDEGKEWRRQKFSHRNSACQNDCRETRIGISIPDEQRSKHREFLRRNHVEETALPM 60
           MLEGIDEGKEWRRQKFSHRNSACQNDCRETRIGISIPDEQRSKHREFLRRNHVEETALPM
Sbjct: 1   MLEGIDEGKEWRRQKFSHRNSACQNDCRETRIGISIPDEQRSKHREFLRRNHVEETALPM 60

Query: 61  SACDIGHRTLSTYLQASKEELSQHYLAKLLFDVLKMRWGTLLFPDR 107
           SACDIGHRTLSTYLQASKEELSQHYLAKLLFDVLKMRWGTLLFPDR
Sbjct: 61  SACDIGHRTLSTYLQASKEELSQHYLAKLLFDVLKMRWGTLLFPDR 106

The following BLAST results are available for this feature:
BLAST of CsaV3_2G013290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61651.18.2e-55100.00hypothetical protein Csa_2G213960 [Cucumis sativus][more]
BLAST of CsaV3_2G013290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G013290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G013290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNS2|A0A0A0LNS2_CUCSA5.4e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G213960 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G013290.1CsaV3_2G013290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G013290CSPI02G10850Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G013290Cucumber (Chinese Long) v3cuccucB067
CsaV3_2G013290Silver-seed gourdcarcucB0258
CsaV3_2G013290Silver-seed gourdcarcucB0265
CsaV3_2G013290Silver-seed gourdcarcucB0354
CsaV3_2G013290Silver-seed gourdcarcucB0785
CsaV3_2G013290Silver-seed gourdcarcucB1001
CsaV3_2G013290Cucumber (Gy14) v2cgybcucB064
CsaV3_2G013290Cucumber (Gy14) v2cgybcucB109
CsaV3_2G013290Cucumber (Gy14) v1cgycucB385
CsaV3_2G013290Cucumber (Gy14) v1cgycucB588
CsaV3_2G013290Cucurbita maxima (Rimu)cmacucB0277
CsaV3_2G013290Cucurbita maxima (Rimu)cmacucB0418
CsaV3_2G013290Cucurbita maxima (Rimu)cmacucB0610
CsaV3_2G013290Cucurbita maxima (Rimu)cmacucB0964
CsaV3_2G013290Cucurbita maxima (Rimu)cmacucB1043
CsaV3_2G013290Cucurbita moschata (Rifu)cmocucB0267
CsaV3_2G013290Cucurbita moschata (Rifu)cmocucB0413
CsaV3_2G013290Cucurbita moschata (Rifu)cmocucB0952
CsaV3_2G013290Cucurbita moschata (Rifu)cmocucB1026
CsaV3_2G013290Cucurbita pepo (Zucchini)cpecucB0145
CsaV3_2G013290Cucurbita pepo (Zucchini)cpecucB0294
CsaV3_2G013290Cucurbita pepo (Zucchini)cpecucB0377
CsaV3_2G013290Cucurbita pepo (Zucchini)cpecucB0746
CsaV3_2G013290Cucurbita pepo (Zucchini)cpecucB0889
CsaV3_2G013290Cucurbita pepo (Zucchini)cpecucB1045
CsaV3_2G013290Wild cucumber (PI 183967)cpicucB134
CsaV3_2G013290Bottle gourd (USVL1VR-Ls)cuclsiB098
CsaV3_2G013290Bottle gourd (USVL1VR-Ls)cuclsiB139
CsaV3_2G013290Bottle gourd (USVL1VR-Ls)cuclsiB140
CsaV3_2G013290Melon (DHL92) v3.5.1cucmeB139
CsaV3_2G013290Melon (DHL92) v3.5.1cucmeB145
CsaV3_2G013290Melon (DHL92) v3.5.1cucmeB147
CsaV3_2G013290Melon (DHL92) v3.6.1cucmedB132
CsaV3_2G013290Melon (DHL92) v3.6.1cucmedB138
CsaV3_2G013290Melon (DHL92) v3.6.1cucmedB140
CsaV3_2G013290Watermelon (Charleston Gray)cucwcgB148
CsaV3_2G013290Watermelon (Charleston Gray)cucwcgB161
CsaV3_2G013290Watermelon (Charleston Gray)cucwcgB168
CsaV3_2G013290Watermelon (97103) v1cucwmB130
CsaV3_2G013290Watermelon (97103) v1cucwmB136
CsaV3_2G013290Watermelon (97103) v1cucwmB184
CsaV3_2G013290Watermelon (97103) v2cucwmbB132
CsaV3_2G013290Watermelon (97103) v2cucwmbB155
CsaV3_2G013290Watermelon (97103) v2cucwmbB134
CsaV3_2G013290Watermelon (97103) v2cucwmbB148
CsaV3_2G013290Wax gourdcucwgoB135
CsaV3_2G013290Wax gourdcucwgoB149
CsaV3_2G013290Wax gourdcucwgoB156
CsaV3_2G013290Wax gourdcucwgoB215