CsaV3_2G011350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G011350
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 8614834 .. 8615176 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGTCGGCTAAAGAGGTTTCGTGGATTTGCCGAGTGTTTGGGGTCGCGCAAGATAGAAGATGAAGCTGGCGTCTGTTGATACCGTGTAAGGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

mRNA sequence

ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

Coding sequence (CDS)

ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

Protein sequence

MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRRAGKGMKAWEELVRGENAGEGRERD
Homology
[Close]
BLAST of CsaV3_2G011350 vs. NCBI nr
Match: KGN61452.1 (hypothetical protein Csa_2G128620 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 7.2e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60
          MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR
Sbjct: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60

Query: 61 AGKGMKAWEELVRGENAGEGRERD 85
          AGKGMKAWEELVRGENAGEGRERD
Sbjct: 61 AGKGMKAWEELVRGENAGEGRERD 84

[Close]
BLAST of CsaV3_2G011350 vs. TrEMBL
Match: tr|A0A0A0LL36|A0A0A0LL36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G128620 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.8e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60
          MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR
Sbjct: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60

Query: 61 AGKGMKAWEELVRGENAGEGRERD 85
          AGKGMKAWEELVRGENAGEGRERD
Sbjct: 61 AGKGMKAWEELVRGENAGEGRERD 84

The following BLAST results are available for this feature:
BLAST of CsaV3_2G011350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61452.17.2e-38100.00hypothetical protein Csa_2G128620 [Cucumis sativus][more]
BLAST of CsaV3_2G011350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011350 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LL36|A0A0A0LL36_CUCSA4.8e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G128620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G011350.1CsaV3_2G011350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..84

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G011350MELO3C008517Melon (DHL92) v3.5.1cucmeB135
CsaV3_2G011350MELO3C008517.2Melon (DHL92) v3.6.1cucmedB128
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G011350Cucumber (Gy14) v2cgybcucB064
CsaV3_2G011350Cucumber (Gy14) v1cgycucB408
CsaV3_2G011350Cucurbita maxima (Rimu)cmacucB0329
CsaV3_2G011350Cucurbita moschata (Rifu)cmocucB0324
CsaV3_2G011350Cucurbita moschata (Rifu)cmocucB0414
CsaV3_2G011350Cucurbita pepo (Zucchini)cpecucB0146
CsaV3_2G011350Cucurbita pepo (Zucchini)cpecucB0194
CsaV3_2G011350Cucurbita pepo (Zucchini)cpecucB1046
CsaV3_2G011350Wild cucumber (PI 183967)cpicucB080
CsaV3_2G011350Bottle gourd (USVL1VR-Ls)cuclsiB102
CsaV3_2G011350Watermelon (Charleston Gray)cucwcgB159
CsaV3_2G011350Watermelon (97103) v1cucwmB189
CsaV3_2G011350Watermelon (97103) v2cucwmbB146
CsaV3_2G011350Wax gourdcucwgoB132
CsaV3_2G011350Silver-seed gourdcarcucB0775