CsaV3_2G010700 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G010700
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 7864542 .. 7865045 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCATTCAAAAAGATGAAGATGATGCAAACAAAACGGAGATATGTAGATTATCATGTGTTAAAACCCAAAGTTCTTTCAACCAAAGTTACAACGGCTATGAAACCATATAACATTTACCAAAGAAAGGAATCCAACAGTGATCGTGAATTGGCAAACTTCAAATGCCCATCACCAAAGAAGAATAACATTGAGCTATTGCCCATAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCACGAGTTGAAGTGTTAAAAGCCAAATTTGGAAGCACCATTTTGAAGGCTCAACAAAAACTTCAAAATTCCAATAATGATTCTAATAAGTATGAATATGTTGTTGTTGGTGCGACTCCAAAGGCATGCTCAATATTACAAGAACAAAAACGAGCTTCAAGGGAAGCTCTTGACAAGATCAACCCAGTGTTTAATTTCAACGAGAATCTCGATTCCATGAGAGAATTTGAAAAGATATTGGAGTCGGGCGCTTGA

mRNA sequence

CAAGCATTCAAAAAGATGAAGATGATGCAAACAAAACGGAGATATGTAGATTATCATGTGTTAAAACCCAAAGTTCTTTCAACCAAAGTTACAACGGCTATGAAACCATATAACATTTACCAAAGAAAGGAATCCAACAGTGATCGTGAATTGGCAAACTTCAAATGCCCATCACCAAAGAAGAATAACATTGAGCTATTGCCCATAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCACGAGTTGAAGTGTTAAAAGCCAAATTTGGAAGCACCATTTTGAAGGCTCAACAAAAACTTCAAAATTCCAATAATGATTCTAATAAGTATGAATATGTTGTTGTTGGTGCGACTCCAAAGGCATGCTCAATATTACAAGAACAAAAACGAGCTTCAAGGGAAGCTCTTGACAAGATCAACCCAGTGTTTAATTTCAACGAGAATCTCGATTCCATGAGAGAATTTGAAAAGATATTGGAGTCGGGCGCTTGA

Coding sequence (CDS)

CAAGCATTCAAAAAGATGAAGATGATGCAAACAAAACGGAGATATGTAGATTATCATGTGTTAAAACCCAAAGTTCTTTCAACCAAAGTTACAACGGCTATGAAACCATATAACATTTACCAAAGAAAGGAATCCAACAGTGATCGTGAATTGGCAAACTTCAAATGCCCATCACCAAAGAAGAATAACATTGAGCTATTGCCCATAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCACGAGTTGAAGTGTTAAAAGCCAAATTTGGAAGCACCATTTTGAAGGCTCAACAAAAACTTCAAAATTCCAATAATGATTCTAATAAGTATGAATATGTTGTTGTTGGTGCGACTCCAAAGGCATGCTCAATATTACAAGAACAAAAACGAGCTTCAAGGGAAGCTCTTGACAAGATCAACCCAGTGTTTAATTTCAACGAGAATCTCGATTCCATGAGAGAATTTGAAAAGATATTGGAGTCGGGCGCTTGA

Protein sequence

QAFKKMKMMQTKRRYVDYHVLKPKVLSTKVTTAMKPYNIYQRKESNSDRELANFKCPSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPKACSILQEQKRASREALDKINPVFNFNENLDSMREFEKILESGA

Homology

[Close]

BLAST of CsaV3_2G010700 vs. NCBI nr
Match: KGN50269.1 (hypothetical protein Csa_5G164650 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 139/157 (88.54%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 6   MKMMQTKRRYVDYHVLKPKVLSTKVTTAMKPYNIYQRKESNSDRELANFKCPSPKKNNIE 65
           M+MMQTKRRY+DYH+LKPKVLSTKVT  MKPYNI+QRKESN D EL NFKC SPKKNNIE
Sbjct: 1   MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPYNIHQRKESNGDHELTNFKCLSPKKNNIE 60

Query: 66  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPKA 125
           LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTI KAQQKLQ SNNDSNKYEYVV+GATPK 
Sbjct: 61  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKT 120

Query: 126 CSILQEQKRASREALDK-INPVFNFNENLDSMREFEK 162
           CSILQEQKRASREALDK INPVF+FNENLDSM+EFE+
Sbjct: 121 CSILQEQKRASREALDKMINPVFDFNENLDSMKEFER 157

[Close]

BLAST of CsaV3_2G010700 vs. NCBI nr
Match: KGN50266.1 (hypothetical protein Csa_5G162640 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 3.1e-48
Identity = 109/132 (82.58%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 34  MKPYNIYQRKESNSDRELANFKCPSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 93
           M PYNI+Q KESNSD +LANFKCPSP KNNI +LPIKPN TIVVLSPRRAARVEVLKAKF
Sbjct: 1   MTPYNIHQIKESNSDHDLANFKCPSP-KNNIAVLPIKPN-TIVVLSPRRAARVEVLKAKF 60

Query: 94  GSTILKAQQKLQNSNNDSNKYEYVVVGATPKACSILQEQKRASREALDKINPVFNFNENL 153
           GSTILKAQQKL NSNNDSNK+EY +VGATP  CSI QEQ++A REALDKINP F+FNENL
Sbjct: 61  GSTILKAQQKLHNSNNDSNKHEY-IVGATPNICSI-QEQRQALREALDKINPAFDFNENL 120

Query: 154 DSMREFEKILES 166
           DSMREF K+LES
Sbjct: 121 DSMREFAKLLES 128

[Close]

BLAST of CsaV3_2G010700 vs. NCBI nr
Match: ONI28945.1 (hypothetical protein PRUPE_1G170900 [Prunus persica])

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-04
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 47  SDRELANF-KCPSPKKNNIELLPIKPNTTIVV-LSPRRAARVEVLKAKFGSTILKAQQK- 106
           S+   +NF  C SP        P+   T+  + LSPRRAARV +LKA+F  TI KA+Q+ 
Sbjct: 91  SEVSSSNFSSCKSPVTVLHHASPVNATTSDEINLSPRRAARVAMLKARFAGTIFKAKQEV 150

Query: 107 -------LQNSNNDSNKYEYVVVGATPKACSILQEQKRASRE----ALDKINPVFNFNEN 166
                  L+N+ ++  K+         KA   ++EQ++  RE    AL+++      ++N
Sbjct: 151 LYSGSNGLENTEDEIRKFR---AAEMMKANEYIKEQRQRDREAARLALEEMERNVVIDDN 210

Query: 167 LDSMREFEKILESGA 168
             +MR+FE ++ SGA
Sbjct: 211 FKTMRDFEMLI-SGA 221

[Close]

BLAST of CsaV3_2G010700 vs. TrEMBL
Match: tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.5e-70
Identity = 139/157 (88.54%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 6   MKMMQTKRRYVDYHVLKPKVLSTKVTTAMKPYNIYQRKESNSDRELANFKCPSPKKNNIE 65
           M+MMQTKRRY+DYH+LKPKVLSTKVT  MKPYNI+QRKESN D EL NFKC SPKKNNIE
Sbjct: 1   MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPYNIHQRKESNGDHELTNFKCLSPKKNNIE 60

Query: 66  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPKA 125
           LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTI KAQQKLQ SNNDSNKYEYVV+GATPK 
Sbjct: 61  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKT 120

Query: 126 CSILQEQKRASREALDK-INPVFNFNENLDSMREFEK 162
           CSILQEQKRASREALDK INPVF+FNENLDSM+EFE+
Sbjct: 121 CSILQEQKRASREALDKMINPVFDFNENLDSMKEFER 157

[Close]

BLAST of CsaV3_2G010700 vs. TrEMBL
Match: tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.0e-48
Identity = 109/132 (82.58%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 34  MKPYNIYQRKESNSDRELANFKCPSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 93
           M PYNI+Q KESNSD +LANFKCPSP KNNI +LPIKPN TIVVLSPRRAARVEVLKAKF
Sbjct: 1   MTPYNIHQIKESNSDHDLANFKCPSP-KNNIAVLPIKPN-TIVVLSPRRAARVEVLKAKF 60

Query: 94  GSTILKAQQKLQNSNNDSNKYEYVVVGATPKACSILQEQKRASREALDKINPVFNFNENL 153
           GSTILKAQQKL NSNNDSNK+EY +VGATP  CSI QEQ++A REALDKINP F+FNENL
Sbjct: 61  GSTILKAQQKLHNSNNDSNKHEY-IVGATPNICSI-QEQRQALREALDKINPAFDFNENL 120

Query: 154 DSMREFEKILES 166
           DSMREF K+LES
Sbjct: 121 DSMREFAKLLES 128

[Close]

BLAST of CsaV3_2G010700 vs. TrEMBL
Match: tr|A0A251R1N0|A0A251R1N0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G170900 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 47  SDRELANF-KCPSPKKNNIELLPIKPNTTIVV-LSPRRAARVEVLKAKFGSTILKAQQK- 106
           S+   +NF  C SP        P+   T+  + LSPRRAARV +LKA+F  TI KA+Q+ 
Sbjct: 91  SEVSSSNFSSCKSPVTVLHHASPVNATTSDEINLSPRRAARVAMLKARFAGTIFKAKQEV 150

Query: 107 -------LQNSNNDSNKYEYVVVGATPKACSILQEQKRASRE----ALDKINPVFNFNEN 166
                  L+N+ ++  K+         KA   ++EQ++  RE    AL+++      ++N
Sbjct: 151 LYSGSNGLENTEDEIRKFR---AAEMMKANEYIKEQRQRDREAARLALEEMERNVVIDDN 210

Query: 167 LDSMREFEKILESGA 168
             +MR+FE ++ SGA
Sbjct: 211 FKTMRDFEMLI-SGA 221

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50269.1	8.3e-70	88.54	hypothetical protein Csa_5G164650 [Cucumis sativus]	[more]
KGN50266.1	3.1e-48	82.58	hypothetical protein Csa_5G162640 [Cucumis sativus]	[more]
ONI28945.1	2.7e-04	33.33	hypothetical protein PRUPE_1G170900 [Prunus persica]	[more]

BLAST of CsaV3_2G010700 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMZ1\|A0A0A0KMZ1_CUCSA	5.5e-70	88.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1	[more]
tr\|A0A0A0KRB6\|A0A0A0KRB6_CUCSA	2.0e-48	82.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1	[more]
tr\|A0A251R1N0\|A0A251R1N0_PRUPE	1.8e-04	33.33	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G170900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G010700.1	CsaV3_2G010700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G010700	CSPI02G08300	Wild cucumber (PI 183967)	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G010700	Silver-seed gourd	carcucB0737
CsaV3_2G010700	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G010700	Cucumber (Gy14) v1	cgycucB408
CsaV3_2G010700	Cucurbita maxima (Rimu)	cmacucB0532
CsaV3_2G010700	Cucurbita maxima (Rimu)	cmacucB0936
CsaV3_2G010700	Cucurbita moschata (Rifu)	cmocucB0518
CsaV3_2G010700	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G010700	Cucurbita pepo (Zucchini)	cpecucB0118
CsaV3_2G010700	Cucurbita pepo (Zucchini)	cpecucB0672
CsaV3_2G010700	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G010700	Melon (DHL92) v3.5.1	cucmeB144
CsaV3_2G010700	Melon (DHL92) v3.6.1	cucmedB137
CsaV3_2G010700	Watermelon (Charleston Gray)	cucwcgB115
CsaV3_2G010700	Watermelon (97103) v1	cucwmB169
CsaV3_2G010700	Watermelon (97103) v1	cucwmB177
CsaV3_2G010700	Watermelon (97103) v2	cucwmbB110
CsaV3_2G010700	Wax gourd	cucwgoB147