CsaV3_2G009470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 5955270 .. 5955455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGCTCAAAGCAGTCCGCCAGATGGAATAATGTACAATTCAGATCGACACTAAGGTATCTTCATGCGGCTTTATGCAGCATCATTCCAGTGCATGAAGATCCTCAAGAAATAGCAACGCCCCTATCGCATAACGACTTTGCAGTATGCAACGAGGGAGAATCTTCTCAACTGTCACCTTAA

mRNA sequence

ATGTGGAGCTCAAAGCAGTCCGCCAGATGGAATAATGTACAATTCAGATCGACACTAAGGTATCTTCATGCGGCTTTATGCAGCATCATTCCAGTGCATGAAGATCCTCAAGAAATAGCAACGCCCCTATCGCATAACGACTTTGCAGTATGCAACGAGGGAGAATCTTCTCAACTGTCACCTTAA

Coding sequence (CDS)

ATGTGGAGCTCAAAGCAGTCCGCCAGATGGAATAATGTACAATTCAGATCGACACTAAGGTATCTTCATGCGGCTTTATGCAGCATCATTCCAGTGCATGAAGATCCTCAAGAAATAGCAACGCCCCTATCGCATAACGACTTTGCAGTATGCAACGAGGGAGAATCTTCTCAACTGTCACCTTAA

Protein sequence

MWSSKQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLSP
Homology
[Close]
BLAST of CsaV3_2G009470 vs. NCBI nr
Match: KGN61242.1 (hypothetical protein Csa_2G073050 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 8.4e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MWSSKQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLS 60
          MWSSKQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLS
Sbjct: 1  MWSSKQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLS 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]
BLAST of CsaV3_2G009470 vs. NCBI nr
Match: KGN50648.1 (hypothetical protein Csa_5G201330 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-08
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 5  KQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQ 59
          +QS R N+VQFRSTL+ LHA +CSIIPV + P EIATPL+ N  AV +E ESS+
Sbjct: 15 EQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAVRSEAESSR 68

[Close]
BLAST of CsaV3_2G009470 vs. TrEMBL
Match: tr|A0A0A0LKG8|A0A0A0LKG8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G073050 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.6e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MWSSKQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLS 60
          MWSSKQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLS
Sbjct: 1  MWSSKQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLS 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]
BLAST of CsaV3_2G009470 vs. TrEMBL
Match: tr|A0A0A0KM31|A0A0A0KM31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G201330 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-08
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 5  KQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQ 59
          +QS R N+VQFRSTL+ LHA +CSIIPV + P EIATPL+ N  AV +E ESS+
Sbjct: 15 EQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAVRSEAESSR 68

The following BLAST results are available for this feature:
BLAST of CsaV3_2G009470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61242.18.4e-28100.00hypothetical protein Csa_2G073050 [Cucumis sativus][more]
KGN50648.15.7e-0862.96hypothetical protein Csa_5G201330 [Cucumis sativus][more]
BLAST of CsaV3_2G009470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKG8|A0A0A0LKG8_CUCSA5.6e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G073050 PE=4 SV=1[more]
tr|A0A0A0KM31|A0A0A0KM31_CUCSA3.8e-0862.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G201330 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009470.1CsaV3_2G009470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G009470CSPI02G07030Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G009470Silver-seed gourdcarcucB0005
CsaV3_2G009470Silver-seed gourdcarcucB0191
CsaV3_2G009470Cucumber (Gy14) v2cgybcucB064
CsaV3_2G009470Cucumber (Gy14) v1cgycucB287
CsaV3_2G009470Cucurbita maxima (Rimu)cmacucB0193
CsaV3_2G009470Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G009470Cucurbita moschata (Rifu)cmocucB0177
CsaV3_2G009470Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G009470Cucurbita pepo (Zucchini)cpecucB0108
CsaV3_2G009470Cucurbita pepo (Zucchini)cpecucB1005
CsaV3_2G009470Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G009470Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G009470Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G009470Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G009470Watermelon (97103) v1cucwmB175
CsaV3_2G009470Watermelon (97103) v2cucwmbB114
CsaV3_2G009470Wax gourdcucwgoB146