CsaV3_2G007380 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G007380
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 3732265 .. 3732423 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAAGAAGTGCTTTTGCATTCTCCCTTGAGGGAGAAACCAAAATGCTGTGATGTGAAAGTTTCTTTGAAGTTTAGTGGGAATATTTGGTTGGAGAGAAACGATAGAATTTTTGGAGACACCGAGAAATCGGATAAGGAGGGTTGGAAGAGGTGA

mRNA sequence

ATGTTGAAAGAAGTGCTTTTGCATTCTCCCTTGAGGGAGAAACCAAAATGCTGTGATGTGAAAGTTTCTTTGAAGTTTAGTGGGAATATTTGGTTGGAGAGAAACGATAGAATTTTTGGAGACACCGAGAAATCGGATAAGGAGGGTTGGAAGAGGTGA

Coding sequence (CDS)

ATGTTGAAAGAAGTGCTTTTGCATTCTCCCTTGAGGGAGAAACCAAAATGCTGTGATGTGAAAGTTTCTTTGAAGTTTAGTGGGAATATTTGGTTGGAGAGAAACGATAGAATTTTTGGAGACACCGAGAAATCGGATAAGGAGGGTTGGAAGAGGTGA

Protein sequence

MLKEVLLHSPLREKPKCCDVKVSLKFSGNIWLERNDRIFGDTEKSDKEGWKR

Homology

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BLAST of CsaV3_2G007380 vs. NCBI nr
Match: KGN61034.1 (hypothetical protein Csa_2G035340 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLKEVLLHSPLREKPKCCDVKVSLKFSGNIWLERNDRIFGDTEKSDKEGWKR 53
          MLKEVLLHSPLREKPKCCDVKVSLKFSGNIWLERNDRIFGDTEKSDKEGWKR
Sbjct: 1  MLKEVLLHSPLREKPKCCDVKVSLKFSGNIWLERNDRIFGDTEKSDKEGWKR 52

[Close]

BLAST of CsaV3_2G007380 vs. TrEMBL
Match: tr|A0A0A0LJ26|A0A0A0LJ26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035340 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MLKEVLLHSPLREKPKCCDVKVSLKFSGNIWLERNDRIFGDTEKSDKEGWKR 53
          MLKEVLLHSPLREKPKCCDVKVSLKFSGNIWLERNDRIFGDTEKSDKEGWKR
Sbjct: 1  MLKEVLLHSPLREKPKCCDVKVSLKFSGNIWLERNDRIFGDTEKSDKEGWKR 52

The following BLAST results are available for this feature:

BLAST of CsaV3_2G007380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61034.1	1.2e-22	100.00	hypothetical protein Csa_2G035340 [Cucumis sativus]	[more]

BLAST of CsaV3_2G007380 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G007380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G007380 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ26\|A0A0A0LJ26_CUCSA	7.9e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035340 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G007380.1	CsaV3_2G007380.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G007380	Cucurbita moschata (Rifu)	cmocucB0069
CsaV3_2G007380	Cucurbita moschata (Rifu)	cmocucB0187
CsaV3_2G007380	Cucurbita moschata (Rifu)	cmocucB0924
CsaV3_2G007380	Cucurbita pepo (Zucchini)	cpecucB0115
CsaV3_2G007380	Cucurbita pepo (Zucchini)	cpecucB1017
CsaV3_2G007380	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G007380	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G007380	Melon (DHL92) v3.5.1	cucmeB119
CsaV3_2G007380	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G007380	Melon (DHL92) v3.6.1	cucmedB113
CsaV3_2G007380	Melon (DHL92) v3.6.1	cucmedB134
CsaV3_2G007380	Watermelon (Charleston Gray)	cucwcgB137
CsaV3_2G007380	Watermelon (97103) v1	cucwmB159
CsaV3_2G007380	Watermelon (97103) v2	cucwmbB123
CsaV3_2G007380	Wax gourd	cucwgoB136
CsaV3_2G007380	Wax gourd	cucwgoB141
CsaV3_2G007380	Silver-seed gourd	carcucB0598
CsaV3_2G007380	Silver-seed gourd	carcucB0952
CsaV3_2G007380	Cucurbita maxima (Rimu)	cmacucB0934
CsaV3_2G007380	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G007380	Cucumber (Gy14) v1	cgycucB097
CsaV3_2G007380	Cucurbita maxima (Rimu)	cmacucB0205