CsaV3_1G045210 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G045210
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 30906223 .. 30906594 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAATCTCCACAAGAATAAGGCTAAAAACAAACACCTCAAAACTAAGAAAACAGAAAAGGTTATTGAGAACCATGAAGTGGAGATTGAAGACGATGAGGAAATGGAGGATGAAATGCAAAGCCCGCTAATTTGTAAAAGGAAAGGTATGGAGGAAGTTTCTAGGTCAAGGAAAAAGAAAAAGAAATCCAAAGCCAAGGACTCTAGGAATCCTATTCCTCTTGTGATCATCAACCCACCTACTGTCCAAACCACCACCACCTCGCCCTTTCCTTCCAAAGCGCTCAACGTCACCACCTTCTCCAATAATCCAAATCCCATCTCCCCAAAATTCCTAAACGCCAATACCACCACTATTACTACTCCTTAG

mRNA sequence

ATGATCAATCTCCACAAGAATAAGGCTAAAAACAAACACCTCAAAACTAAGAAAACAGAAAAGGTTATTGAGAACCATGAAGTGGAGATTGAAGACGATGAGGAAATGGAGGATGAAATGCAAAGCCCGCTAATTTGTAAAAGGAAAGGTATGGAGGAAGTTTCTAGGTCAAGGAAAAAGAAAAAGAAATCCAAAGCCAAGGACTCTAGGAATCCTATTCCTCTTGTGATCATCAACCCACCTACTGTCCAAACCACCACCACCTCGCCCTTTCCTTCCAAAGCGCTCAACGTCACCACCTTCTCCAATAATCCAAATCCCATCTCCCCAAAATTCCTAAACGCCAATACCACCACTATTACTACTCCTTAG

Coding sequence (CDS)

ATGATCAATCTCCACAAGAATAAGGCTAAAAACAAACACCTCAAAACTAAGAAAACAGAAAAGGTTATTGAGAACCATGAAGTGGAGATTGAAGACGATGAGGAAATGGAGGATGAAATGCAAAGCCCGCTAATTTGTAAAAGGAAAGGTATGGAGGAAGTTTCTAGGTCAAGGAAAAAGAAAAAGAAATCCAAAGCCAAGGACTCTAGGAATCCTATTCCTCTTGTGATCATCAACCCACCTACTGTCCAAACCACCACCACCTCGCCCTTTCCTTCCAAAGCGCTCAACGTCACCACCTTCTCCAATAATCCAAATCCCATCTCCCCAAAATTCCTAAACGCCAATACCACCACTATTACTACTCCTTAG

Protein sequence

MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSRSRKKKKKSKAKDSRNPIPLVIINPPTVQTTTTSPFPSKALNVTTFSNNPNPISPKFLNANTTTITTP

Homology

[Close]

BLAST of CsaV3_1G045210 vs. NCBI nr
Match: KGN66753.1 (hypothetical protein Csa_1G676915 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSXXXXX 60
           MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSXXXXX
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFPSKALNVTTFSNNPNPISPKFLNANTTTI 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFPSKALNVTTFSNNPNPISPKFLNANTTTI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFPSKALNVTTFSNNPNPISPKFLNANTTTI 120

Query: 121 TTP 124
           TTP
Sbjct: 121 TTP 123

[Close]

BLAST of CsaV3_1G045210 vs. TrEMBL
Match: tr|A0A0A0LY93|A0A0A0LY93_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G676915 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.5e-36
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSXXXXX 60
           MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSXXXXX
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFPSKALNVTTFSNNPNPISPKFLNANTTTI 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFPSKALNVTTFSNNPNPISPKFLNANTTTI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFPSKALNVTTFSNNPNPISPKFLNANTTTI 120

Query: 121 TTP 124
           TTP
Sbjct: 121 TTP 123

The following BLAST results are available for this feature:

BLAST of CsaV3_1G045210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66753.1	1.3e-35	100.00	hypothetical protein Csa_1G676915 [Cucumis sativus]	[more]

BLAST of CsaV3_1G045210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY93\|A0A0A0LY93_CUCSA	8.5e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G676915 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G045210.1	CsaV3_1G045210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G045210	CSPI01G33210	Wild cucumber (PI 183967)	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G045210	Silver-seed gourd	carcucB0949
CsaV3_1G045210	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G045210	Cucurbita maxima (Rimu)	cmacucB0072
CsaV3_1G045210	Cucumber (Gy14) v1	cgycucB603
CsaV3_1G045210	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G045210	Cucurbita moschata (Rifu)	cmocucB0059
CsaV3_1G045210	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G045210	Cucurbita pepo (Zucchini)	cpecucB0799
CsaV3_1G045210	Cucurbita pepo (Zucchini)	cpecucB0874
CsaV3_1G045210	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G045210	Melon (DHL92) v3.5.1	cucmeB044
CsaV3_1G045210	Melon (DHL92) v3.6.1	cucmedB041