CSPI01G33210 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33210
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 28101533 .. 28101880 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAATCTCCACAAGAACAAGGCTAAAAACAAACACCTCAAAACTAAGAAAATAGAAAAGGTTATAGACGATGAGGAAATGGAGGATGAAATGCAAAGCCCGCTAATTTGTAAAAGGAAATGTGTGGAGGAAGTTTCTAGGTCAAGGAAAAAGAAAAAGAAATCCAAAGCCAAGGACTCTAGGAATCTTATTCCTCTTGCGATCATCAACCCACCTACTGTCCAAACCACCACCACCTCGCCCTTTCCTTCCAAAGCGCTCAACGTCACCACCTTCTCCAATAATCCAAATCCCATCTCCCCAAAATTCCTAAACGCCAATACCACCACTATTACTACTCCTTAG

mRNA sequence

ATGATCAATCTCCACAAGAACAAGGCTAAAAACAAACACCTCAAAACTAAGAAAATAGAAAAGGTTATAGACGATGAGGAAATGGAGGATGAAATGCAAAGCCCGCTAATTTGTAAAAGGAAATGTGTGGAGGAAGTTTCTAGGTCAAGGAAAAAGAAAAAGAAATCCAAAGCCAAGGACTCTAGGAATCTTATTCCTCTTGCGATCATCAACCCACCTACTGTCCAAACCACCACCACCTCGCCCTTTCCTTCCAAAGCGCTCAACGTCACCACCTTCTCCAATAATCCAAATCCCATCTCCCCAAAATTCCTAAACGCCAATACCACCACTATTACTACTCCTTAG

Coding sequence (CDS)

ATGATCAATCTCCACAAGAACAAGGCTAAAAACAAACACCTCAAAACTAAGAAAATAGAAAAGGTTATAGACGATGAGGAAATGGAGGATGAAATGCAAAGCCCGCTAATTTGTAAAAGGAAATGTGTGGAGGAAGTTTCTAGGTCAAGGAAAAAGAAAAAGAAATCCAAAGCCAAGGACTCTAGGAATCTTATTCCTCTTGCGATCATCAACCCACCTACTGTCCAAACCACCACCACCTCGCCCTTTCCTTCCAAAGCGCTCAACGTCACCACCTTCTCCAATAATCCAAATCCCATCTCCCCAAAATTCCTAAACGCCAATACCACCACTATTACTACTCCTTAG

Homology

[Close]

BLAST of CSPI01G33210 vs. TrEMBL
Match: A0A0A0LY93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-47
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 1


Query: 1   MINLHKNKAKNKHLKTKKIEKVI--------DDEEMEDEMQSPLICKRKCVEEVSRSRKK 60
           MINLHKNKAKNKHLKTKK EKVI        DDEEMEDEMQSPLICKRK +EEVSRSRKK
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSRSRKK 60

Query: 61  KKKSKAKDSRNLIPLAIINPPTVQTTTTSPFPSKALNVTTFSNNPNPISPKFLNANTTTI 116
           KKKSKAKDSRN IPL IINPPTVQTTTTSPFPSKALNVTTFSNNPNPISPKFLNANTTTI
Sbjct: 61  KKKSKAKDSRNPIPLVIINPPTVQTTTTSPFPSKALNVTTFSNNPNPISPKFLNANTTTI 120

[Close]

BLAST of CSPI01G33210 vs. TrEMBL
Match: A0A0A0KTK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G406560 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1


Query: 1   MINLHKNKAKNKHLKTKKIEKVI---------DDEEMEDEMQSPLICKRKCVEEVSRSRK 60
           MINLHKNKA+ K LK+KK+E ++         D+EE E E Q+PL+ KRK  +E S S+K
Sbjct: 7   MINLHKNKAERKRLKSKKMETIVENKEMEVDNDEEEREKEKQTPLVHKRKGKDEGSGSKK 66

Query: 61  KKKKSKAKDSRNLIPLAIINPPTVQTTTT----SPFPSKALNVTTFSNNPNPISPKF 105
           ++KK +AK+S++  PLAI  P   QTT T    S  P++    TT  +  +   PKF
Sbjct: 67  QEKKPRAKESKDPFPLAIFTPHVAQTTKTTYSLSKSPTRTPTKTTLPSQEHQCPPKF 123

[Close]

BLAST of CSPI01G33210 vs. NCBI nr
Match: gi|700211657|gb|KGN66753.1| (hypothetical protein Csa_1G676915 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 1


Query: 1   MINLHKNKAKNKHLKTKKIEKVI--------DDEEMEDEMQSPLICKRKCVEEVSRSRKK 60
           MINLHKNKAKNKHLKTKK EKVI        DDEEMEDEMQSPLICKRK +EEVSRSRKK
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSRSRKK 60

Query: 61  KKKSKAKDSRNLIPLAIINPPTVQTTTTSPFPSKALNVTTFSNNPNPISPKFLNANTTTI 116
           KKKSKAKDSRN IPL IINPPTVQTTTTSPFPSKALNVTTFSNNPNPISPKFLNANTTTI
Sbjct: 61  KKKSKAKDSRNPIPLVIINPPTVQTTTTSPFPSKALNVTTFSNNPNPISPKFLNANTTTI 120

[Close]

BLAST of CSPI01G33210 vs. NCBI nr
Match: gi|700195834|gb|KGN51011.1| (hypothetical protein Csa_5G406560 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1


Query: 1   MINLHKNKAKNKHLKTKKIEKVI---------DDEEMEDEMQSPLICKRKCVEEVSRSRK 60
           MINLHKNKA+ K LK+KK+E ++         D+EE E E Q+PL+ KRK  +E S S+K
Sbjct: 7   MINLHKNKAERKRLKSKKMETIVENKEMEVDNDEEEREKEKQTPLVHKRKGKDEGSGSKK 66

Query: 61  KKKKSKAKDSRNLIPLAIINPPTVQTTTT----SPFPSKALNVTTFSNNPNPISPKF 105
           ++KK +AK+S++  PLAI  P   QTT T    S  P++    TT  +  +   PKF
Sbjct: 67  QEKKPRAKESKDPFPLAIFTPHVAQTTKTTYSLSKSPTRTPTKTTLPSQEHQCPPKF 123

The following BLAST results are available for this feature:

BLAST of CSPI01G33210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G33210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY93_CUCSA	1.9e-47	89.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1	[more]
A0A0A0KTK5_CUCSA	1.1e-10	43.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G406560 PE=4 SV=1	[more]

BLAST of CSPI01G33210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G33210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211657\|gb\|KGN66753.1\|	2.7e-47	89.43	hypothetical protein Csa_1G676915 [Cucumis sativus]	[more]
gi\|700195834\|gb\|KGN51011.1\|	1.5e-10	43.59	hypothetical protein Csa_5G406560 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G33210.1	CSPI01G33210.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G33210	CsaV3_1G045210	Cucumber (Chinese Long) v3	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G33210	Melon (DHL92) v3.6.1	cpimedB038
CSPI01G33210	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G33210	Cucumber (Gy14) v1	cgycpiB584
CSPI01G33210	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G33210	Melon (DHL92) v3.5.1	cpimeB044
CSPI01G33210	Bottle gourd (USVL1VR-Ls)	cpilsiB059