CsaV3_1G043990 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G043990
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 29151827 .. 29152088 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTGAGTTTTGAGGCGATGAAAGGGGCAGGAGTTGAGGGGTTAGGTGGATGTGTGGTGGGGATTGGTGGAGCAGGAAACGGCCGGCGACTATAATTTCTACAGGTTTGAAGAGCTTTTGGGCATGGTGGAGAAATACGAGATGAAAGTTCACCTGTCTATTTGTGCACCACCCTTGGTTCAAGCTTTAGCCTTGCTGCTGTTCGAAGAAGCCAACCGTGGTTCGACTTCATTGGTTCAAGGCGACTTCTCACATTAA

mRNA sequence

ATGGACGTGAGTTTTGAGGCGATGAAAGGGGCAGGAGAAACGGCCGGCGACTATAATTTCTACAGGTTTGAAGAGCTTTTGGGCATGGTGGAGAAATACGAGATGAAAGTTCACCTGTCTATTTGTGCACCACCCTTGGTTCAAGCTTTAGCCTTGCTGCTGTTCGAAGAAGCCAACCGTGGTTCGACTTCATTGGTTCAAGGCGACTTCTCACATTAA

Coding sequence (CDS)

ATGGACGTGAGTTTTGAGGCGATGAAAGGGGCAGGAGAAACGGCCGGCGACTATAATTTCTACAGGTTTGAAGAGCTTTTGGGCATGGTGGAGAAATACGAGATGAAAGTTCACCTGTCTATTTGTGCACCACCCTTGGTTCAAGCTTTAGCCTTGCTGCTGTTCGAAGAAGCCAACCGTGGTTCGACTTCATTGGTTCAAGGCGACTTCTCACATTAA

Protein sequence

MDVSFEAMKGAGETAGDYNFYRFEELLGMVEKYEMKVHLSICAPPLVQALALLLFEEANRGSTSLVQGDFSH

Homology

[Close]

BLAST of CsaV3_1G043990 vs. NCBI nr
Match: KGN66609.1 (hypothetical protein Csa_1G641030 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDVSFEAMKGAGETAGDYNFYRFEELLGMVEKYEMKVHLSICAPPLVQALALLLFEEANR 60
          MDVSFEAMKGAGETAGDYNFYRFEELLGMVEKYEMKVHLSICAPPLVQALALLLFEEANR
Sbjct: 1  MDVSFEAMKGAGETAGDYNFYRFEELLGMVEKYEMKVHLSICAPPLVQALALLLFEEANR 60

Query: 61 GSTSLVQGDFSH 73
          GSTSLVQGDFSH
Sbjct: 61 GSTSLVQGDFSH 72

[Close]

BLAST of CsaV3_1G043990 vs. TrEMBL
Match: tr|A0A0A0LZZ7|A0A0A0LZZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G641030 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDVSFEAMKGAGETAGDYNFYRFEELLGMVEKYEMKVHLSICAPPLVQALALLLFEEANR 60
          MDVSFEAMKGAGETAGDYNFYRFEELLGMVEKYEMKVHLSICAPPLVQALALLLFEEANR
Sbjct: 1  MDVSFEAMKGAGETAGDYNFYRFEELLGMVEKYEMKVHLSICAPPLVQALALLLFEEANR 60

Query: 61 GSTSLVQGDFSH 73
          GSTSLVQGDFSH
Sbjct: 61 GSTSLVQGDFSH 72

The following BLAST results are available for this feature:

BLAST of CsaV3_1G043990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66609.1	1.0e-32	100.00	hypothetical protein Csa_1G641030 [Cucumis sativus]	[more]

BLAST of CsaV3_1G043990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G043990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G043990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LZZ7\|A0A0A0LZZ7_CUCSA	6.8e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G641030 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G043990.1	CsaV3_1G043990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G043990	CsGy1G030760	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G043990	Wax gourd	cucwgoB105
CsaV3_1G043990	Silver-seed gourd	carcucB0573
CsaV3_1G043990	Silver-seed gourd	carcucB1010
CsaV3_1G043990	Cucumber (Gy14) v1	cgycucB542
CsaV3_1G043990	Cucurbita maxima (Rimu)	cmacucB0066
CsaV3_1G043990	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G043990	Cucurbita moschata (Rifu)	cmocucB0053
CsaV3_1G043990	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G043990	Cucurbita pepo (Zucchini)	cpecucB0000
CsaV3_1G043990	Cucurbita pepo (Zucchini)	cpecucB0428
CsaV3_1G043990	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G043990	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G043990	Melon (DHL92) v3.5.1	cucmeB044
CsaV3_1G043990	Melon (DHL92) v3.6.1	cucmedB041
CsaV3_1G043990	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G043990	Watermelon (97103) v1	cucwmB021
CsaV3_1G043990	Watermelon (97103) v2	cucwmbB046