CsaV3_1G042550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G042550
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 27491290 .. 27491496 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCGCACCTACTCAGATCAGCCACCGCTCGTCCAGATCCTCAATCTCCTTTCTGTTCGTTGGTCTCTGCGCTTTGTTTGCGTAAGCATCGTCTATATCCGCTGCTAAATAGAACGCCAATACTTCAGACACCATCGACCAGACATTCGCGTCCCCGTTCTTCAGACACCACCCCCAACCCCTTCTTGCAAACACTGCCTTGA

mRNA sequence

ATGTCGTCGCACCTACTCAGATCAGCCACCGCTCGTCCAGATCCTCAATCTCCTTTCTGTTCGTTGGTCTCTGCGCTTTGTTTGCGTAAGCATCGTCTATATCCGCTGCTAAATAGAACGCCAATACTTCAGACACCATCGACCAGACATTCGCGTCCCCGTTCTTCAGACACCACCCCCAACCCCTTCTTGCAAACACTGCCTTGA

Coding sequence (CDS)

ATGTCGTCGCACCTACTCAGATCAGCCACCGCTCGTCCAGATCCTCAATCTCCTTTCTGTTCGTTGGTCTCTGCGCTTTGTTTGCGTAAGCATCGTCTATATCCGCTGCTAAATAGAACGCCAATACTTCAGACACCATCGACCAGACATTCGCGTCCCCGTTCTTCAGACACCACCCCCAACCCCTTCTTGCAAACACTGCCTTGA

Protein sequence

MSSHLLRSATARPDPQSPFCSLVSALCLRKHRLYPLLNRTPILQTPSTRHSRPRSSDTTPNPFLQTLP
Homology
[Close]
BLAST of CsaV3_1G042550 vs. NCBI nr
Match: KGN66463.1 (hypothetical protein Csa_1G612870 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MSSHLLRSATARPDPQSPFCSLVSALCLRKHRLYPLLNRTPILQTPSTRHSRPRSSDTTP 60
          MSSHLLRSATARPDPQSPFCSLVSALCLRKHRLYPLLNRTPILQTPSTRHSRPRSSDTTP
Sbjct: 1  MSSHLLRSATARPDPQSPFCSLVSALCLRKHRLYPLLNRTPILQTPSTRHSRPRSSDTTP 60

Query: 61 NPFLQTLP 69
          NPFLQTLP
Sbjct: 61 NPFLQTLP 68

[Close]
BLAST of CsaV3_1G042550 vs. TrEMBL
Match: tr|A0A0A0LXG5|A0A0A0LXG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G612870 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MSSHLLRSATARPDPQSPFCSLVSALCLRKHRLYPLLNRTPILQTPSTRHSRPRSSDTTP 60
          MSSHLLRSATARPDPQSPFCSLVSALCLRKHRLYPLLNRTPILQTPSTRHSRPRSSDTTP
Sbjct: 1  MSSHLLRSATARPDPQSPFCSLVSALCLRKHRLYPLLNRTPILQTPSTRHSRPRSSDTTP 60

Query: 61 NPFLQTLP 69
          NPFLQTLP
Sbjct: 61 NPFLQTLP 68

The following BLAST results are available for this feature:
BLAST of CsaV3_1G042550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66463.12.0e-30100.00hypothetical protein Csa_1G612870 [Cucumis sativus][more]
BLAST of CsaV3_1G042550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G042550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G042550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXG5|A0A0A0LXG5_CUCSA1.3e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G612870 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G042550.1CsaV3_1G042550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G042550CsGy1G029490Cucumber (Gy14) v2cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G042550Cucumber (Chinese Long) v3cuccucB060
CsaV3_1G042550Silver-seed gourdcarcucB0199
CsaV3_1G042550Silver-seed gourdcarcucB0503
CsaV3_1G042550Silver-seed gourdcarcucB0557
CsaV3_1G042550Silver-seed gourdcarcucB0955
CsaV3_1G042550Cucumber (Gy14) v2cgybcucB312
CsaV3_1G042550Cucumber (Gy14) v1cgycucB031
CsaV3_1G042550Cucumber (Gy14) v1cgycucB213
CsaV3_1G042550Cucurbita maxima (Rimu)cmacucB0066
CsaV3_1G042550Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G042550Cucurbita maxima (Rimu)cmacucB0415
CsaV3_1G042550Cucurbita maxima (Rimu)cmacucB0647
CsaV3_1G042550Cucurbita maxima (Rimu)cmacucB1042
CsaV3_1G042550Cucurbita moschata (Rifu)cmocucB0053
CsaV3_1G042550Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G042550Cucurbita moschata (Rifu)cmocucB0410
CsaV3_1G042550Cucurbita moschata (Rifu)cmocucB0632
CsaV3_1G042550Cucurbita moschata (Rifu)cmocucB0676
CsaV3_1G042550Cucurbita moschata (Rifu)cmocucB1025
CsaV3_1G042550Cucurbita pepo (Zucchini)cpecucB0142
CsaV3_1G042550Cucurbita pepo (Zucchini)cpecucB0333
CsaV3_1G042550Cucurbita pepo (Zucchini)cpecucB0373
CsaV3_1G042550Cucurbita pepo (Zucchini)cpecucB0428
CsaV3_1G042550Cucurbita pepo (Zucchini)cpecucB0813
CsaV3_1G042550Cucurbita pepo (Zucchini)cpecucB0877
CsaV3_1G042550Wild cucumber (PI 183967)cpicucB000
CsaV3_1G042550Wild cucumber (PI 183967)cpicucB383
CsaV3_1G042550Bottle gourd (USVL1VR-Ls)cuclsiB043
CsaV3_1G042550Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G042550Melon (DHL92) v3.5.1cucmeB040
CsaV3_1G042550Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G042550Melon (DHL92) v3.6.1cucmedB037
CsaV3_1G042550Melon (DHL92) v3.6.1cucmedB039
CsaV3_1G042550Watermelon (Charleston Gray)cucwcgB050
CsaV3_1G042550Watermelon (97103) v1cucwmB025
CsaV3_1G042550Watermelon (97103) v1cucwmB081
CsaV3_1G042550Watermelon (97103) v2cucwmbB027
CsaV3_1G042550Watermelon (97103) v2cucwmbB041
CsaV3_1G042550Wax gourdcucwgoB024
CsaV3_1G042550Wax gourdcucwgoB079
CsaV3_1G042550Wax gourdcucwgoB091