CsaV3_1G039170 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G039170
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat
Location	chr1 : 24670976 .. 24673741 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAAAAACATGAGAAAAAGTAAAACAACAAAACGAACTCTAAAATCTTCTTCTTCCCATTTCTTCCACTAAGCAACACCTTTTGTCTGCCCTACGCCGTTTGCCGCCGTGCCTCTACCTTGCTTTCCCGCCGGTCAGTTTCATATCCTCTCTATTTTTTTTTTTGTTGTTGTTAGTATTCTTAGACTCATACCAAGCCATTGTTTGAACGTAGTAGAAGGAAAATCGATGTTTTGTACAGTCCAGTATGTTGTTCAATTCAATACATTATTCATTTTCTTTCTAGGAATGCCTAATGGGGTTGTTGAGTTTGGATTCTTTGATGCTCTGTACACTATGCTATCTGCTATTTGGAAAGTTTTTTTTTCTTATCGAGAGAAATTTTCTGTCTTGATTTAGACCTTTTTTTTTTATGTATTGCAGATTTTTCTGTCTGTTCTGATGGGTAGTCAAGGGTGAAAAGCTTTTTGTTAGCCAAGATGGAGTAATTGGGCGAAAACAGTATTTCAAATAAGTTATTTGGGTTCACTGATTTGACACATCCGAAACTGATCAAGGGATGGTACAGAAATTTCTAGTTCAATGATATGAGTCATCATAAATTGATTAAGGGATGATTTAGAAATTGCTAGTTCACTGAATTGAGCATTTCTAGTTCGATGATACAGAAATTGATCAAGCGATCGAGATTACTTATTTTTCACCGAAATGTCTGCTTAATACGTTTCCAATTGCTTAGCACTTTCAGTCCAAACAAATTTGACTTTGAGAATAATCATAAACAACGTCGAAAGATCCGTGAACGCATTCCTTTTGTCACTGATGTTAAAGAGGTGAAGGATCCATGTGAGGCATTGGCTCTCTTTGAGAATTACCATGAAAAGGGCTTCAAACACCACTATCCTTCCTACTCATCTCTCATCTACAAGTTGGCTCGTTCTCGTAGATTTGAAGCTGTCGAGACTATTCTTGGTCACTTACGAAATAGGAATATTCGTTGCAATGAGACCCTTTTCGTCGCTTTGATTCAACATTATGGGAAAGCTCATTTGGTTGAGAAAGGTATTGAGCTTTTCCACCAAATGCCTTCCTTTAATTGTTTTCGTACTCTGCAGTCCTTTAATGTATTGCTTAATACATTAGTTGATTGTGACCAGTTTTCTAAAGCAAGTGAAATCTTCCAACAGGCTTATGAAATGGACTTTCGCCCTAATTCAGTGTCCTATAATATAATGATTAAGGGTTGGATCAAGAAGGGAGGATGGGAACAAGCATGTAACCTGTTTGACGAAATGCTCGAGAAGGGAGTTCAACCTAGTGTTGTAACATACAATAGTTTTTTAGGGGTTTTATGTAGAAAGGGTGAAATGGACACAGCATTGTGTTTGTTCAAGAACATGACTGAGAAAGGACATCATCCTAATGCTGTTACTTATGCATTGTTAATGGAAGGATGGTGTTTCATAGGTAAATACAAGGAAGCAAAAAAGTTGATGTTTGATATGGAGTTTCATGGTTGTAAACTGCGACCTGTGAACTACGGTGTTTTAATGACACATCTTGGAAAGACTGGGAACATTGACGAAATGGAATCTTTACTTAATGAGATGAAGAAAAGACGGTTGAAGCCCGATGTTGTGACATATAATATTCTTGTAAATTACTTGTGTAAGGAAGGAAAGGTTGGAGATGCTTATAAGGTTTTGGTTAAAATGCAAGTGGGAGGTTGTGATCCTAATGCAGCAACTTATAGGATGATGATTGATGGATATTGTAATGCAGGGGACTTCGATGGGGCTATGAAGATTTTAAATGCTATGTTGATGAGTGGGCACTATCCTCATTTGAAAACTTTTGCTTCTTTAGTTGTTGGTCTTTTGAAAGGTGAAAATAATGATGATTATGTTTGCTTTGTATTGGAGGAAATGGAGAAGAGACAGCTGAGGTTTGATGCTGAAACTTGGAGGATTTTGATCATGGATGTTTGTGGTCAACATGTTGAAATAGGTAGCCACTTAAATGATTTGATCTCCTTACCCTAAATCTGCATGGGGGGAAATGGTGACAGCATTTCTTTTTCCTTTTATTGGGTTGGTATACATAGACCACTAGGCCGAGGCAATGAGACTACAAGATGAAAATGAAGCTCAATCAGCTCAAATGAAGTTTATGTCGAAGCTAATGGCAGGTCACACCGAGTCAACTTAATCACGAGGCAATCTCTATGCCACAAGAACCATCGACAAGAGCTAAGAGTTAAGAGTTAAAAAGACCGAAAAGAACGTCCATGGTGAAGAATTGCAATTTAAGTTTCAAGATACATTTGGGTCATCAACATTGTTGATGATGCATTATGTACTTATTTATTTATTTCATTTTAAGAAAAGGAATATTTATTTGATGTATTTGCATTTATAAGTTCATGTAAGTAGTTGAATGGGTGTTGGACGTATTTAAACGGGAAAAGGTTGAGTCGTTTCATGTTGACCTTTCATTCAGTATATATAACCATTTTGGGTTGTCTAGTGGTAAAAAAGAGACATGATTTCAATAACTAATTAAGAGGTCATAGGTCATGAGTTGAATCCATGGTGACCACCTAGTTAGAAATTAATTTTTTTAGAGTTTTCTTGACACTTGTAAGGTTAAATGTCCGTGAGACTAGTCGAAGTGCGCATAAGCTGGTTCGAACACTCACGATATGAAAAATAAAAAAGTAACATTGTAATTTGAATAAATATATCTTGTAGAGTTTCGTCCCTCG

mRNA sequence

ATGATACAGAAATTGATCAAGCGATCGAGATTACTTATTTTTCACCGAAATGTCTGCTTAATACGTTTCCAATTGCTTAGCACTTTCAGTCCAAACAAATTTGACTTTGAGAATAATCATAAACAACGTCGAAAGATCCGTGAACGCATTCCTTTTGTCACTGATGTTAAAGAGGTGAAGGATCCATGTGAGGCATTGGCTCTCTTTGAGAATTACCATGAAAAGGGCTTCAAACACCACTATCCTTCCTACTCATCTCTCATCTACAAGTTGGCTCGTTCTCGTAGATTTGAAGCTGTCGAGACTATTCTTGGTCACTTACGAAATAGGAATATTCGTTGCAATGAGACCCTTTTCGTCGCTTTGATTCAACATTATGGGAAAGCTCATTTGGTTGAGAAAGGTATTGAGCTTTTCCACCAAATGCCTTCCTTTAATTGTTTTCGTACTCTGCAGTCCTTTAATGTATTGCTTAATACATTAGTTGATTGTGACCAGTTTTCTAAAGCAAGTGAAATCTTCCAACAGGCTTATGAAATGGACTTTCGCCCTAATTCAGTGTCCTATAATATAATGATTAAGGGTTGGATCAAGAAGGGAGGATGGGAACAAGCATGTAACCTGTTTGACGAAATGCTCGAGAAGGGAGTTCAACCTAGTGTTGTAACATACAATAGTTTTTTAGGGGTTTTATGTAGAAAGGGTGAAATGGACACAGCATTGTGTTTGTTCAAGAACATGACTGAGAAAGGACATCATCCTAATGCTGTTACTTATGCATTGTTAATGGAAGGATGGTGTTTCATAGGTAAATACAAGGAAGCAAAAAAGTTGATGTTTGATATGGAGTTTCATGGTTGTAAACTGCGACCTGTGAACTACGGTGTTTTAATGACACATCTTGGAAAGACTGGGAACATTGACGAAATGGAATCTTTACTTAATGAGATGAAGAAAAGACGGTTGAAGCCCGATGTTGTGACATATAATATTCTTGTAAATTACTTGTGTAAGGAAGGAAAGGTTGGAGATGCTTATAAGGTTTTGGTTAAAATGCAAGTGGGAGGTTGTGATCCTAATGCAGCAACTTATAGGATGATGATTGATGGATATTGTAATGCAGGGGACTTCGATGGGGCTATGAAGATTTTAAATGCTATGTTGATGAGTGGGCACTATCCTCATTTGAAAACTTTTGCTTCTTTAGTTGTTGGTCTTTTGAAAGGTGAAAATAATGATGATTATGTTTGCTTTGTATTGGAGGAAATGGAGAAGAGACAGCTGAGGTTTGATGCTGAAACTTGGAGGATTTTGATCATGGATGTTTGTGGTCAACATGTTGAAATAGGTAGCCACTTAAATGATTTGATCTCCTTACCCTAA

Coding sequence (CDS)

ATGATACAGAAATTGATCAAGCGATCGAGATTACTTATTTTTCACCGAAATGTCTGCTTAATACGTTTCCAATTGCTTAGCACTTTCAGTCCAAACAAATTTGACTTTGAGAATAATCATAAACAACGTCGAAAGATCCGTGAACGCATTCCTTTTGTCACTGATGTTAAAGAGGTGAAGGATCCATGTGAGGCATTGGCTCTCTTTGAGAATTACCATGAAAAGGGCTTCAAACACCACTATCCTTCCTACTCATCTCTCATCTACAAGTTGGCTCGTTCTCGTAGATTTGAAGCTGTCGAGACTATTCTTGGTCACTTACGAAATAGGAATATTCGTTGCAATGAGACCCTTTTCGTCGCTTTGATTCAACATTATGGGAAAGCTCATTTGGTTGAGAAAGGTATTGAGCTTTTCCACCAAATGCCTTCCTTTAATTGTTTTCGTACTCTGCAGTCCTTTAATGTATTGCTTAATACATTAGTTGATTGTGACCAGTTTTCTAAAGCAAGTGAAATCTTCCAACAGGCTTATGAAATGGACTTTCGCCCTAATTCAGTGTCCTATAATATAATGATTAAGGGTTGGATCAAGAAGGGAGGATGGGAACAAGCATGTAACCTGTTTGACGAAATGCTCGAGAAGGGAGTTCAACCTAGTGTTGTAACATACAATAGTTTTTTAGGGGTTTTATGTAGAAAGGGTGAAATGGACACAGCATTGTGTTTGTTCAAGAACATGACTGAGAAAGGACATCATCCTAATGCTGTTACTTATGCATTGTTAATGGAAGGATGGTGTTTCATAGGTAAATACAAGGAAGCAAAAAAGTTGATGTTTGATATGGAGTTTCATGGTTGTAAACTGCGACCTGTGAACTACGGTGTTTTAATGACACATCTTGGAAAGACTGGGAACATTGACGAAATGGAATCTTTACTTAATGAGATGAAGAAAAGACGGTTGAAGCCCGATGTTGTGACATATAATATTCTTGTAAATTACTTGTGTAAGGAAGGAAAGGTTGGAGATGCTTATAAGGTTTTGGTTAAAATGCAAGTGGGAGGTTGTGATCCTAATGCAGCAACTTATAGGATGATGATTGATGGATATTGTAATGCAGGGGACTTCGATGGGGCTATGAAGATTTTAAATGCTATGTTGATGAGTGGGCACTATCCTCATTTGAAAACTTTTGCTTCTTTAGTTGTTGGTCTTTTGAAAGGTGAAAATAATGATGATTATGTTTGCTTTGTATTGGAGGAAATGGAGAAGAGACAGCTGAGGTTTGATGCTGAAACTTGGAGGATTTTGATCATGGATGTTTGTGGTCAACATGTTGAAATAGGTAGCCACTTAAATGATTTGATCTCCTTACCCTAA

Protein sequence

MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVKDPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFVLEEMEKRQLRFDAETWRILIMDVCGQHVEIGSHLNDLISLP

Homology

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BLAST of CsaV3_1G039170 vs. NCBI nr
Match: XP_011659903.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial isoform X1 [Cucumis sativus] >KGN66101.1 hypothetical protein Csa_1G570750 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 5.4e-95
Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0


Query: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60
           MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK
Sbjct: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60

Query: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120
           DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV
Sbjct: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120

Query: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFXXXXXXXXXXXXX 180
           ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFXXXXXXXXXXXXX
Sbjct: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENNDDYVCFVL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENNDDYVCFVL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENNDDYVCFVL 420

Query: 421 EEMEKRQLRFDAETWRILIMDVCGQHVEIGSHLNDLISLP 461
           EEMEKRQLRFDAETWRILIMDVCGQHVEIGSHLNDLISLP
Sbjct: 421 EEMEKRQLRFDAETWRILIMDVCGQHVEIGSHLNDLISLP 460

[Close]

BLAST of CsaV3_1G039170 vs. NCBI nr
Match: XP_016900945.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like isoform X1 [Cucumis melo] >XP_016900946.1 PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 5.1e-85
Identity = 160/167 (95.81%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60
           MIQKLIKRS LLIFHRNVCLI FQLLSTFS NKFD EN+HKQRRK+RE IPFVTDVKEVK
Sbjct: 1   MIQKLIKRSSLLIFHRNVCLIHFQLLSTFSTNKFDSENHHKQRRKLREPIPFVTDVKEVK 60

Query: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120
           DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV
Sbjct: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120

Query: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 168
           ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF
Sbjct: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 167

[Close]

BLAST of CsaV3_1G039170 vs. NCBI nr
Match: XP_023520779.1 (pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023520780.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023520781.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023520782.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023520783.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023520784.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60
           MIQKLIK SRLL+FHRNVCL+ FQLLST  PNK D+ + HKQ +K+RE IPFVTDVKEVK
Sbjct: 1   MIQKLIKGSRLLVFHRNVCLLHFQLLSTHRPNKSDYVSPHKQHQKLREPIPFVTDVKEVK 60

Query: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120
           DPCEALALFE+YHE+GFKHHYPSYSSLIYKLARSRRFEAVE ILGHL+NRNIRCNETLFV
Sbjct: 61  DPCEALALFEDYHERGFKHHYPSYSSLIYKLARSRRFEAVEMILGHLQNRNIRCNETLFV 120

Query: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 168
           ALIQHYGKAHLVEKGIELFH+MPSFNCFR+ QS NVLLNTLVDCDQF
Sbjct: 121 ALIQHYGKAHLVEKGIELFHRMPSFNCFRSRQSLNVLLNTLVDCDQF 167

[Close]

BLAST of CsaV3_1G039170 vs. NCBI nr
Match: XP_022961570.1 (pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita moschata] >XP_022961571.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita moschata] >XP_022961572.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita moschata] >XP_022961573.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita moschata] >XP_022961574.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita moschata] >XP_022961575.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita moschata] >XP_022961576.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita moschata])

HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 144/167 (86.23%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60
           MIQKLIK SRLL+FHRNVCLI FQLLST  PNKFD  + HKQ +K+RE IPFVTDVKEVK
Sbjct: 1   MIQKLIKGSRLLVFHRNVCLIHFQLLSTHRPNKFDHVSPHKQHQKLREPIPFVTDVKEVK 60

Query: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120
           DPCEALALF++YHE+GFKHHYPSYSSLIYKLARSRRFEAVE ILGHL+NRNIRCNETLFV
Sbjct: 61  DPCEALALFKDYHERGFKHHYPSYSSLIYKLARSRRFEAVEMILGHLQNRNIRCNETLFV 120

Query: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 168
           ALIQHYGK HLVEKGIELFH+MPSFNCFR+ QS NVLLNTLVDCDQF
Sbjct: 121 ALIQHYGKVHLVEKGIELFHRMPSFNCFRSRQSLNVLLNTLVDCDQF 167

[Close]

BLAST of CsaV3_1G039170 vs. NCBI nr
Match: XP_022968715.1 (pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita maxima] >XP_022968716.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita maxima] >XP_022968717.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita maxima] >XP_022968718.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita maxima] >XP_022968719.1 pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita maxima])

HSP 1 Score: 287.7 bits (735), Expect = 6.8e-74
Identity = 140/167 (83.83%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60
           M QKLIK SRLL+FHRNVCLI FQLLST  PN+FD  + HKQ +K+RE IPFVTDVKEVK
Sbjct: 1   MTQKLIKGSRLLVFHRNVCLIHFQLLSTHRPNEFDRVSPHKQHQKLREPIPFVTDVKEVK 60

Query: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120
           DPCEALALFE+YHE+GFKHHYPSYSSLIYKLARSRRFEAVE IL HL+NRNI CNETLFV
Sbjct: 61  DPCEALALFEDYHERGFKHHYPSYSSLIYKLARSRRFEAVEMILDHLQNRNIHCNETLFV 120

Query: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 168
           ALIQHYGKAHLVE+GI+LFH+MPSFNCFR+ QS NVLLNTLVDCDQF
Sbjct: 121 ALIQHYGKAHLVERGIDLFHRMPSFNCFRSRQSLNVLLNTLVDCDQF 167

[Close]

BLAST of CsaV3_1G039170 vs. TAIR10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-39
Identity = 83/163 (50.92%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 6   IKRSRLLIFHRNVCLIRFQLLSTFSPNK-----FDFENNHKQRRKIRERIPFVTDVKEVK 65
           ++R    +   N C+   +   T  P K        E  HK  RK  E +PF+TD+KE++
Sbjct: 1   MRRRLSSVLINNQCIASQRHYHTSRPEKPTKKASSHEPTHKFTRKPWEEVPFLTDLKEIE 60

Query: 66  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 125
           DP EAL+LF  Y E GF+H YPSYSSLIYKLA+SR F+AV+ IL  +R RN+RC E+LF+
Sbjct: 61  DPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFM 120

Query: 126 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVD 164
            LIQHYGKA  V+K I++FH++ SF+C RT+QS N L+N LVD
Sbjct: 121 GLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVD 163

[Close]

BLAST of CsaV3_1G039170 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-15
Identity = 42/128 (32.81%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 42  QRRKIRERIPFVTDVKEVKDPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVE 101
           QR   +  +  +T  + + D    + L+      GF H+Y +Y S+++KL+R+R F+ VE
Sbjct: 45  QRLFPKRLVSMITQQQNI-DLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVE 104

Query: 102 TILGHLRNR--NIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLN 161
           +++  LRN    I+C E LF+ L+++YG A   E  + +F ++P F   R+++S N LLN
Sbjct: 105 SLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLN 164

Query: 162 TLVDCDQF 168
            L+   +F
Sbjct: 165 VLIQNQRF 171

[Close]

BLAST of CsaV3_1G039170 vs. TAIR10
Match: AT1G74580.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-11
Identity = 38/110 (34.55%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 56  VKEVKDPCEALALFENYH-EKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR-NRNIR 115
           +K  KDP +AL +F +   E GFKH   +Y S+I KL    +FEA+E +L  +R N    
Sbjct: 14  IKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNH 73

Query: 116 CNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVD 164
             E ++V  +++YG+   V++ + +F +M  ++C  T+ S+N +++ LVD
Sbjct: 74  MLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVD 123

[Close]

BLAST of CsaV3_1G039170 vs. TAIR10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-10
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 59  VKDPCEA---LALFENYHEKG-FKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRC 118
           V++P EA     +F++  + G FK    + SS+I   A S  F++VE +L  +R  N   
Sbjct: 51  VENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVI 110

Query: 119 NETLFVALIQHYGKAHLVEKGIELFHQM-PSFNCFRTLQSFNVLLNTLVD 164
            E  F+ + + YGKAHL +K ++LFH+M   F C R+++SFN +LN +++
Sbjct: 111 IERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIIN 160

[Close]

BLAST of CsaV3_1G039170 vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-09
Identity = 32/114 (28.07%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 56  VKEVKDPCEALALFEN-YHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRC 115
           +K  K+P  A ALF++     G+ H    Y  ++ +L+ +R    V  I+  +R++  +C
Sbjct: 17  LKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKC 76

Query: 116 NETLFVALIQHYGKAHLVEKGIELFHQMPS-FNCFRTLQSFNVLLNTLVDCDQF 168
           +E + +++I+ YGK  + ++ +++F +M   F C   ++S+N LLN  V+  Q+
Sbjct: 77  DEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQW 130

[Close]

BLAST of CsaV3_1G039170 vs. Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.9e-38
Identity = 83/163 (50.92%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 6   IKRSRLLIFHRNVCLIRFQLLSTFSPNK-----FDFENNHKQRRKIRERIPFVTDVKEVK 65
           ++R    +   N C+   +   T  P K        E  HK  RK  E +PF+TD+KE++
Sbjct: 1   MRRRLSSVLINNQCIASQRHYHTSRPEKPTKKASSHEPTHKFTRKPWEEVPFLTDLKEIE 60

Query: 66  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 125
           DP EAL+LF  Y E GF+H YPSYSSLIYKLA+SR F+AV+ IL  +R RN+RC E+LF+
Sbjct: 61  DPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFM 120

Query: 126 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVD 164
            LIQHYGKA  V+K I++FH++ SF+C RT+QS N L+N LVD
Sbjct: 121 GLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVD 163

[Close]

BLAST of CsaV3_1G039170 vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-14
Identity = 42/128 (32.81%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 42  QRRKIRERIPFVTDVKEVKDPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVE 101
           QR   +  +  +T  + + D    + L+      GF H+Y +Y S+++KL+R+R F+ VE
Sbjct: 45  QRLFPKRLVSMITQQQNI-DLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVE 104

Query: 102 TILGHLRNR--NIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLN 161
           +++  LRN    I+C E LF+ L+++YG A   E  + +F ++P F   R+++S N LLN
Sbjct: 105 SLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLN 164

Query: 162 TLVDCDQF 168
            L+   +F
Sbjct: 165 VLIQNQRF 171

[Close]

BLAST of CsaV3_1G039170 vs. Swiss-Prot
Match: sp|Q9CA58|PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana OX=3702 GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-10
Identity = 38/110 (34.55%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 56  VKEVKDPCEALALFENYH-EKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR-NRNIR 115
           +K  KDP +AL +F +   E GFKH   +Y S+I KL    +FEA+E +L  +R N    
Sbjct: 14  IKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNH 73

Query: 116 CNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVD 164
             E ++V  +++YG+   V++ + +F +M  ++C  T+ S+N +++ LVD
Sbjct: 74  MLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVD 123

[Close]

BLAST of CsaV3_1G039170 vs. Swiss-Prot
Match: sp|O49436|PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-09
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 59  VKDPCEA---LALFENYHEKG-FKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRC 118
           V++P EA     +F++  + G FK    + SS+I   A S  F++VE +L  +R  N   
Sbjct: 51  VENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVI 110

Query: 119 NETLFVALIQHYGKAHLVEKGIELFHQM-PSFNCFRTLQSFNVLLNTLVD 164
            E  F+ + + YGKAHL +K ++LFH+M   F C R+++SFN +LN +++
Sbjct: 111 IERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIIN 160

[Close]

BLAST of CsaV3_1G039170 vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.6e-08
Identity = 32/114 (28.07%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 56  VKEVKDPCEALALFEN-YHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRC 115
           +K  K+P  A ALF++     G+ H    Y  ++ +L+ +R    V  I+  +R++  +C
Sbjct: 17  LKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKC 76

Query: 116 NETLFVALIQHYGKAHLVEKGIELFHQMPS-FNCFRTLQSFNVLLNTLVDCDQF 168
           +E + +++I+ YGK  + ++ +++F +M   F C   ++S+N LLN  V+  Q+
Sbjct: 77  DEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQW 130

[Close]

BLAST of CsaV3_1G039170 vs. TrEMBL
Match: tr|A0A0A0M1K9|A0A0A0M1K9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570750 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.6e-95
Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0


Query: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60
           MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK
Sbjct: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60

Query: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120
           DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV
Sbjct: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120

Query: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFXXXXXXXXXXXXX 180
           ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFXXXXXXXXXXXXX
Sbjct: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENNDDYVCFVL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENNDDYVCFVL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENNDDYVCFVL 420

Query: 421 EEMEKRQLRFDAETWRILIMDVCGQHVEIGSHLNDLISLP 461
           EEMEKRQLRFDAETWRILIMDVCGQHVEIGSHLNDLISLP
Sbjct: 421 EEMEKRQLRFDAETWRILIMDVCGQHVEIGSHLNDLISLP 460

[Close]

BLAST of CsaV3_1G039170 vs. TrEMBL
Match: tr|A0A1S4DYZ6|A0A1S4DYZ6_CUCME (pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492193 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.3e-85
Identity = 160/167 (95.81%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MIQKLIKRSRLLIFHRNVCLIRFQLLSTFSPNKFDFENNHKQRRKIRERIPFVTDVKEVK 60
           MIQKLIKRS LLIFHRNVCLI FQLLSTFS NKFD EN+HKQRRK+RE IPFVTDVKEVK
Sbjct: 1   MIQKLIKRSSLLIFHRNVCLIHFQLLSTFSTNKFDSENHHKQRRKLREPIPFVTDVKEVK 60

Query: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120
           DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV
Sbjct: 61  DPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFV 120

Query: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 168
           ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF
Sbjct: 121 ALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 167

[Close]

BLAST of CsaV3_1G039170 vs. TrEMBL
Match: tr|A0A251NM68|A0A251NM68_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G086400 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 8.0e-47
Identity = 98/144 (68.06%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 28  TFSPNKFDF----ENNHKQRRKIRERIPFVTDVKEVKDPCEALALFENYHEKGFKHHYPS 87
           TF PNK       E  H+   K+R  IPFV+DVKEV+DP E L+LF  YH+ GFKH YPS
Sbjct: 32  TFRPNKPKTKPRRERLHRDTTKLRRPIPFVSDVKEVEDPEEGLSLFYEYHQMGFKHDYPS 91

Query: 88  YSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMP 147
           YS+L+YKLARSR FEAVETILGH+R+RNI C +TLF+ALIQHYGKA+LVEK IELF+QMP
Sbjct: 92  YSALLYKLARSRNFEAVETILGHVRDRNIHCKDTLFIALIQHYGKANLVEKAIELFNQMP 151

Query: 148 SFNCFRTLQSFNVLLNTLVDCDQF 168
           SFNC RTLQ+FN LLN LVD  +F
Sbjct: 152 SFNCVRTLQAFNALLNVLVDSGRF 175

[Close]

BLAST of CsaV3_1G039170 vs. TrEMBL
Match: tr|M5W9F4|M5W9F4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa015993mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 8.0e-47
Identity = 98/144 (68.06%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 28  TFSPNKFDF----ENNHKQRRKIRERIPFVTDVKEVKDPCEALALFENYHEKGFKHHYPS 87
           TF PNK       E  H+   K+R  IPFV+DVKEV+DP E L+LF  YH+ GFKH YPS
Sbjct: 32  TFRPNKPKTKPRRERLHRDTTKLRRPIPFVSDVKEVEDPEEGLSLFYEYHQMGFKHDYPS 91

Query: 88  YSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMP 147
           YS+L+YKLARSR FEAVETILGH+R+RNI C +TLF+ALIQHYGKA+LVEK IELF+QMP
Sbjct: 92  YSALLYKLARSRNFEAVETILGHVRDRNIHCKDTLFIALIQHYGKANLVEKAIELFNQMP 151

Query: 148 SFNCFRTLQSFNVLLNTLVDCDQF 168
           SFNC RTLQ+FN LLN LVD  +F
Sbjct: 152 SFNCVRTLQAFNALLNVLVDSGRF 175

[Close]

BLAST of CsaV3_1G039170 vs. TrEMBL
Match: tr|A0A2I4EQG6|A0A2I4EQG6_9ROSI (pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Juglans regia OX=51240 GN=LOC108991719 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 98/152 (64.47%), Postives = 116/152 (76.32%), Query Frame = 0


Query: 21  IRFQLLSTFSPNKFDFENNHKQR-----RKIRERIPFVTDVKEVKDPCEALALFENYHEK 80
           I  Q   T  P K   +  ++QR     +K R+ IPFVT+VKEV+DP EAL LF  YH+ 
Sbjct: 24  IHAQAYRTVRPTKSKTKPRNEQRPFRHPQKPRKPIPFVTNVKEVRDPDEALCLFHEYHQT 83

Query: 81  GFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKG 140
           GFKH YPSYS+L+YKLARSR FEAVET+LG +++RNIRC ETLF+ALIQHYGKA  V+K 
Sbjct: 84  GFKHDYPSYSALVYKLARSRNFEAVETVLGLIQDRNIRCKETLFIALIQHYGKALSVDKA 143

Query: 141 IELFHQMPSFNCFRTLQSFNVLLNTLVDCDQF 168
           IELFH+MPSFNC RTLQSFN LLN LVD D+F
Sbjct: 144 IELFHRMPSFNCVRTLQSFNALLNILVDSDRF 175

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659903.1	5.4e-95	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial ...	[more]
XP_016900945.1	5.1e-85	95.81	PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-...	[more]
XP_023520779.1	1.5e-76	86.23	pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita ...	[more]
XP_022961570.1	2.5e-76	86.23	pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita ...	[more]
XP_022968715.1	6.8e-74	83.83	pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Cucurbita ...	[more]

BLAST of CsaV3_1G039170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07740.1	1.0e-39	50.92	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G16420.1	3.0e-15	32.81	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G74580.1	2.6e-11	34.55	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G20090.1	1.0e-10	36.36	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G09060.1	4.2e-09	28.07	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CsaV3_1G039170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQQ1\|PPR20_ARATH	1.9e-38	50.92	Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop...	[more]
sp\|Q9FFE3\|PP388_ARATH	5.4e-14	32.81	Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop...	[more]
sp\|Q9CA58\|PP120_ARATH	4.8e-10	34.55	Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis th...	[more]
sp\|O49436\|PP327_ARATH	1.8e-09	36.36	Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SS81\|PP221_ARATH	7.6e-08	28.07	Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_1G039170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M1K9\|A0A0A0M1K9_CUCSA	3.6e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570750 PE=4 SV=1	[more]
tr\|A0A1S4DYZ6\|A0A1S4DYZ6_CUCME	3.3e-85	95.81	pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like isofor...	[more]
tr\|A0A251NM68\|A0A251NM68_PRUPE	8.0e-47	68.06	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G086400 PE=4 SV=1	[more]
tr\|M5W9F4\|M5W9F4_PRUPE	8.0e-47	68.06	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa015993mg PE=4 SV=1	[more]
tr\|A0A2I4EQG6\|A0A2I4EQG6_9ROSI	2.0e-45	64.47	pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Juglans ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039170.1	CsaV3_1G039170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 184..233 e-value: 2.9E-17 score: 62.5 coord: 324..373 e-value: 3.8E-18 score: 65.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 294..321 e-value: 3.6E-4 score: 20.5 coord: 119..147 e-value: 0.0098 score: 16.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 327..361 e-value: 8.4E-9 score: 33.1 coord: 153..185 e-value: 0.0023 score: 16.0 coord: 119..148 e-value: 6.4E-4 score: 17.7 coord: 294..326 e-value: 4.1E-7 score: 27.8 coord: 363..394 e-value: 2.4E-8 score: 31.6 coord: 222..256 e-value: 1.3E-8 score: 32.5 coord: 187..220 e-value: 8.6E-8 score: 29.9
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 250..283 e-value: 1.3E-5 score: 24.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 395..430 score: 6.106
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 325..359 score: 12.386
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 80..114 score: 7.048
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 290..324 score: 10.315
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 150..184 score: 8.681
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 185..219 score: 13.493
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 115..149 score: 8.265
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 255..289 score: 9.986
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 220..254 score: 12.178
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 360..394 score: 12.255
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 159..318 e-value: 9.1E-44 score: 152.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 35..158 e-value: 5.3E-17 score: 63.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 319..390 e-value: 6.7E-24 score: 86.4
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 33..456
None	No IPR available	PANTHER	PTHR24015:SF734	SUBFAMILY NOT NAMED	coord: 33..456
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 161..295

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G039170	CSPI01G26830	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G039170	Cucsa.163560	Cucumber (Gy14) v1	cgycucB259
CsaV3_1G039170	CmaCh10G010670	Cucurbita maxima (Rimu)	cmacucB0069
CsaV3_1G039170	CmoCh10G011480	Cucurbita moschata (Rifu)	cmocucB0062
CsaV3_1G039170	Cp4.1LG00g02160	Cucurbita pepo (Zucchini)	cpecucB0004
CsaV3_1G039170	CsGy1G026060	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G039170	Cla005254	Watermelon (97103) v1	cucwmB025
CsaV3_1G039170	ClCG03G016800	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G039170	Lsi06G001520	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G039170	MELO3C029300.2	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G039170	Cla97C03G067140	Watermelon (97103) v2	cucwmbB041
CsaV3_1G039170	Bhi02G001666	Wax gourd	cucwgoB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G039170	Wax gourd	cucwgoB090
CsaV3_1G039170	Silver-seed gourd	carcucB0587
CsaV3_1G039170	Cucurbita maxima (Rimu)	cmacucB0114
CsaV3_1G039170	Cucurbita moschata (Rifu)	cmocucB0102
CsaV3_1G039170	Cucurbita pepo (Zucchini)	cpecucB0817
CsaV3_1G039170	Melon (DHL92) v3.5.1	cucmeB042