CsaV3_1G031990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G031990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 19009277 .. 19010538 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATGTAATTGAAACATGATCTTGATATATATGTAGTGATCTCTGTATATGTTATATGTTGTTAAATTAGATGACGTAGGATGAGAATATTGCTAAATTGTTATTATTGTTTTCACTTTTAACTGAAAAAAAAGTCAAGATACATTTAGTAACCTCACTTCCAAACAAAGAGTGAAGTGTTTCTCTCCTAGGGTTAGCCCCACTGAAATAAAACACTATTTGAATTGATGATAGTCCCCACCCCATGTTCTCTCCCTCACATATATCTCTATCCATCCCTCTCTCTCTCTTTTCTCTTCTCTCTTTCATCACCATTTCAATTCCCCTTCTCATCAACTTTACCCATTATTATTATTATTCAATTTCCATTCAATATTTCTCCTCCAAACTTACAAAAATATGGGTATGGAAATTCTAGATGAATTCTCCCCACTTACACCATTATCCTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAGCAAGAAGATCAGGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCACCGGCGCCAAAGAAACCCCGTCCCCCTCGAAGGAAATTGAACTTTCTGCCTCCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTATATTTTCAGTTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAATTCTTCTTTTCTTTTTCTTTTTAATAATTATTGATTTTAACGTGGGTATGTGTATAAATGAACAAATTCATGAAAACAACCATTGTATTTCTAATTCATTATCTCTTCCTCTCTAGACTATATATTTTATTCCCTTTCAAGTTTGTAACTTTGTTTTGGTCAAGACCTTTTTTTTCCCTTTGTGTTAGTTTCAATGTAATTAAGACTATATATATTTATGTATTTTGCCAAATCATATTCATCTTTTTGCTTATATATTGTGTGATTGTGTTTTTATTTTTCACATAATTCTTATGGATCCAAAGATTATTAGAAATTCTAATTAGTTCAATTATTGAATTATGTTTTAGCTAACTTTGTTTTTTTTTTCTTTCTTTCAAATATTTGGAGTTAGAGATTCCAAGGATTATTATAAATTGTGGGTGAATTATCAGAGTTTATGTTGAGTTAAGAGTTAGAGCTTTATTAGGCTTTTAAAAAGGGTATAGATCCCTTTTCTTTTCTCTTTTAACATTGATTAAAGGAAAAGCTAACTAAAACCAAGCTGGAAGTTGGG

mRNA sequence

ATGGGTATGGAAATTCTAGATGAATTCTCCCCACTTACACCATTATCCTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAGCAAGAAGATCAGGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCACCGGCGCCAAAGAAACCCCGTCCCCCTCGAAGGAAATTGAACTTTCTGCCTCCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTATATTTTCAGTTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAA

Coding sequence (CDS)

ATGGGTATGGAAATTCTAGATGAATTCTCCCCACTTACACCATTATCCTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAGCAAGAAGATCAGGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCACCGGCGCCAAAGAAACCCCGTCCCCCTCGAAGGAAATTGAACTTTCTGCCTCCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTATATTTTCAGTTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAA

Protein sequence

MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH
Homology
[Close]
BLAST of CsaV3_1G031990 vs. NCBI nr
Match: KGN65496.1 (hypothetical protein Csa_1G426970 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.4e-16
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGMEILDEFSPLTPLSSLQFIIPKHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXFFEAPQDLNSVYFQFHIPSKKIKPIH 102
           XXXXXXXXXXXXXXXFFEAPQDLNSVYFQFHIPSKKIKPIH
Sbjct: 61  XXXXXXXXXXXXXXXFFEAPQDLNSVYFQFHIPSKKIKPIH 101

[Close]
BLAST of CsaV3_1G031990 vs. TrEMBL
Match: tr|A0A0A0M005|A0A0A0M005_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.5e-17
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGMEILDEFSPLTPLSSLQFIIPKHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXFFEAPQDLNSVYFQFHIPSKKIKPIH 102
           XXXXXXXXXXXXXXXFFEAPQDLNSVYFQFHIPSKKIKPIH
Sbjct: 61  XXXXXXXXXXXXXXXFFEAPQDLNSVYFQFHIPSKKIKPIH 101

The following BLAST results are available for this feature:
BLAST of CsaV3_1G031990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65496.11.4e-16100.00hypothetical protein Csa_1G426970 [Cucumis sativus][more]
BLAST of CsaV3_1G031990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G031990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G031990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M005|A0A0A0M005_CUCSA9.5e-17100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G031990.1CsaV3_1G031990.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35162:SF2SUBFAMILY NOT NAMEDcoord: 1..91
NoneNo IPR availablePANTHERPTHR35162FAMILY NOT NAMEDcoord: 1..91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G031990CSPI01G20670Wild cucumber (PI 183967)cpicucB000
CsaV3_1G031990Cp4.1LG04g13240Cucurbita pepo (Zucchini)cpecucB0822
CsaV3_1G031990Cla018869Watermelon (97103) v1cucwmB092
CsaV3_1G031990MELO3C017416Melon (DHL92) v3.5.1cucmeB043
CsaV3_1G031990ClCG06G013770Watermelon (Charleston Gray)cucwcgB075
CsaV3_1G031990Lsi06G012190Bottle gourd (USVL1VR-Ls)cuclsiB069
CsaV3_1G031990MELO3C017416.2Melon (DHL92) v3.6.1cucmedB040
CsaV3_1G031990Cla97C06G123220Watermelon (97103) v2cucwmbB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G031990Watermelon (97103) v2cucwmbB021
CsaV3_1G031990Wax gourdcucwgoB110
CsaV3_1G031990Cucumber (Chinese Long) v3cuccucB007
CsaV3_1G031990Silver-seed gourdcarcucB0626
CsaV3_1G031990Silver-seed gourdcarcucB0826
CsaV3_1G031990Cucumber (Gy14) v2cgybcucB001
CsaV3_1G031990Cucumber (Gy14) v2cgybcucB056
CsaV3_1G031990Cucumber (Gy14) v1cgycucB432
CsaV3_1G031990Cucurbita maxima (Rimu)cmacucB0068
CsaV3_1G031990Cucurbita maxima (Rimu)cmacucB0113
CsaV3_1G031990Cucurbita maxima (Rimu)cmacucB0109
CsaV3_1G031990Cucurbita maxima (Rimu)cmacucB0182
CsaV3_1G031990Cucurbita moschata (Rifu)cmocucB0055
CsaV3_1G031990Cucurbita moschata (Rifu)cmocucB0101
CsaV3_1G031990Cucurbita moschata (Rifu)cmocucB0167
CsaV3_1G031990Cucurbita pepo (Zucchini)cpecucB0430
CsaV3_1G031990Cucurbita pepo (Zucchini)cpecucB0797
CsaV3_1G031990Cucurbita pepo (Zucchini)cpecucB0999
CsaV3_1G031990Wild cucumber (PI 183967)cpicucB071
CsaV3_1G031990Bottle gourd (USVL1VR-Ls)cuclsiB007
CsaV3_1G031990Melon (DHL92) v3.5.1cucmeB080
CsaV3_1G031990Melon (DHL92) v3.6.1cucmedB074
CsaV3_1G031990Watermelon (Charleston Gray)cucwcgB011
CsaV3_1G031990Watermelon (97103) v1cucwmB087