CSPI01G20670 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G20670
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 16312260 .. 16312824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGTCCCCACCCCATGTTCTCTCCCTCACATATATCTCTATCCATCCCTCTCTCTCTCTTTTCTCTTCTCTCTTTCATCACCATTTCAATTCCCCTTCTCATCAACTTTACCCATTATTATTATTATTCAATTTCCATTCAATATTTCTCCTCCAAACTTACAAAAATATGGGTATGGAAATTCTAGATGAATTCTCCCCACTTACACCATTATCCTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAGCAAGAAGATCAGGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCACCGGCGCCAAAGAAACCCCGTCCCCCTCGAAGGAAATTGAACTTTCTGCCTCCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTATATTTTCAGTTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAATTCTTCTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTAATAATTATTGATTTTAACGTGGGTATGTGTATAAATGAACAAATTCATG

mRNA sequence

ATGGGTATGGAAATTCTAGATGAATTCTCCCCACTTACACCATTATCCTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAGCAAGAAGATCAGGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCACCGGCGCCAAAGAAACCCCGTCCCCCTCGAAGGAAATTGAACTTTCTGCCTCCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTATATTTTCAGTTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAA

Coding sequence (CDS)

ATGGGTATGGAAATTCTAGATGAATTCTCCCCACTTACACCATTATCCTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAGCAAGAAGATCAGGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCACCGGCGCCAAAGAAACCCCGTCCCCCTCGAAGGAAATTGAACTTTCTGCCTCCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTATATTTTCAGTTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAA
Homology
[Close]
BLAST of CSPI01G20670 vs. TrEMBL
Match: A0A0A0M005_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426970 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60
           MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60

Query: 61  KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH 102
           KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH
Sbjct: 61  KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH 101

[Close]
BLAST of CSPI01G20670 vs. TrEMBL
Match: A0A059CL15_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00076 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-10
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 1 

Query: 1   MGMEILDEFSPLTPL--------SSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLK-- 60
           MGM + +EF P TP+        S L  + P  + +     D E+EC TP +    +   
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCERKQLHSSPDDEDECRTPKSCPDPMTGH 60

Query: 61  PAIICPPAPKKPRPPRRKLNFLPPP-FFEAPQDLNSVYFQFHIPSKKIK 99
            A  CPPAPKKPRPPRRK +  PP  FF+ P DL SV+     PSKKI+
Sbjct: 61  TARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIR 109

[Close]
BLAST of CSPI01G20670 vs. TrEMBL
Match: V7B2R0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G233800g PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-09
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1 

Query: 1  MGMEILDEFSPLTPLSSLQFIIPKHKT--------EQQQQEDQEEECLTPTAAAARLKPA 60
          MG++IL+EF P+TP+ +   ++P ++T        ++   ED  EEC TPT+ + +L+  
Sbjct: 1  MGLQILEEFRPITPIRT---VVPTNRTLKHDLGTTKEVVNEDVVEECHTPTSPSQKLRTP 60

Query: 61 IICPPAPKKPR-PPRRKLNFLPPPFFEAPQDLNSVY 88
          ++CPPAPKKPR PPRR L+     FF    DL S++
Sbjct: 61 LVCPPAPKKPRVPPRRNLDPPSEGFFSVSHDLASIF 93

[Close]
BLAST of CSPI01G20670 vs. TrEMBL
Match: A0A0S3RHJ4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G307200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-09
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1 

Query: 1  MGMEILDEFSPLTPLSSLQFIIP-----KHK---TEQQQQEDQEEECLTPTAAAARLKPA 60
          MG+EIL+ F P+TP+ +   ++P     KH    T++   ED  EEC TPT+ + +L+  
Sbjct: 1  MGLEILEGFRPITPIRT---VVPTTRTFKHDLGTTKEMLNEDVVEECHTPTSPSQKLRTP 60

Query: 61 IICPPAPKKPRPPRRKLNFLPPP--FFEAPQDLNSVY 88
          ++CPPAPKKPR P R+ N  PP   FF    DL S++
Sbjct: 61 LVCPPAPKKPRLPPRRHNSDPPSQGFFSVSHDLASIF 94

[Close]
BLAST of CSPI01G20670 vs. TrEMBL
Match: A0A0L9UAV8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g008100 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-09
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1 

Query: 1  MGMEILDEFSPLTPLSSLQFIIP-----KHK---TEQQQQEDQEEECLTPTAAAARLKPA 60
          MG+EIL+ F P+TP+ +   ++P     KH    T++   ED  EEC TPT+ + +L+  
Sbjct: 1  MGLEILEGFRPITPIRT---VVPTTRTFKHDLGTTKEMLNEDVVEECHTPTSPSQKLRTP 60

Query: 61 IICPPAPKKPRPPRRKLNFLPPP--FFEAPQDLNSVY 88
          ++CPPAPKKPR P R+ N  PP   FF    DL S++
Sbjct: 61 LVCPPAPKKPRLPPRRHNSDPPSQGFFSVSHDLASIF 94

[Close]
BLAST of CSPI01G20670 vs. NCBI nr
Match: gi|700210400|gb|KGN65496.1| (hypothetical protein Csa_1G426970 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60
           MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60

Query: 61  KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH 102
           KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH
Sbjct: 61  KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH 101

[Close]
BLAST of CSPI01G20670 vs. NCBI nr
Match: gi|629113935|gb|KCW78610.1| (hypothetical protein EUGRSUZ_C00076 [Eucalyptus grandis])

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-10
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 1 

Query: 1   MGMEILDEFSPLTPL--------SSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLK-- 60
           MGM + +EF P TP+        S L  + P  + +     D E+EC TP +    +   
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCERKQLHSSPDDEDECRTPKSCPDPMTGH 60

Query: 61  PAIICPPAPKKPRPPRRKLNFLPPP-FFEAPQDLNSVYFQFHIPSKKIK 99
            A  CPPAPKKPRPPRRK +  PP  FF+ P DL SV+     PSKKI+
Sbjct: 61  TARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIR 109

[Close]
BLAST of CSPI01G20670 vs. NCBI nr
Match: gi|593330641|ref|XP_007138747.1| (hypothetical protein PHAVU_009G233800g [Phaseolus vulgaris])

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-09
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1 

Query: 1  MGMEILDEFSPLTPLSSLQFIIPKHKT--------EQQQQEDQEEECLTPTAAAARLKPA 60
          MG++IL+EF P+TP+ +   ++P ++T        ++   ED  EEC TPT+ + +L+  
Sbjct: 1  MGLQILEEFRPITPIRT---VVPTNRTLKHDLGTTKEVVNEDVVEECHTPTSPSQKLRTP 60

Query: 61 IICPPAPKKPR-PPRRKLNFLPPPFFEAPQDLNSVY 88
          ++CPPAPKKPR PPRR L+     FF    DL S++
Sbjct: 61 LVCPPAPKKPRVPPRRNLDPPSEGFFSVSHDLASIF 93

[Close]
BLAST of CSPI01G20670 vs. NCBI nr
Match: gi|920696658|gb|KOM39883.1| (hypothetical protein LR48_Vigan04g008100 [Vigna angularis])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1 

Query: 1  MGMEILDEFSPLTPLSSLQFIIP-----KHK---TEQQQQEDQEEECLTPTAAAARLKPA 60
          MG+EIL+ F P+TP+ +   ++P     KH    T++   ED  EEC TPT+ + +L+  
Sbjct: 1  MGLEILEGFRPITPIRT---VVPTTRTFKHDLGTTKEMLNEDVVEECHTPTSPSQKLRTP 60

Query: 61 IICPPAPKKPRPPRRKLNFLPPP--FFEAPQDLNSVY 88
          ++CPPAPKKPR P R+ N  PP   FF    DL S++
Sbjct: 61 LVCPPAPKKPRLPPRRHNSDPPSQGFFSVSHDLASIF 94

[Close]
BLAST of CSPI01G20670 vs. NCBI nr
Match: gi|1012341356|gb|KYP52560.1| (hypothetical protein KK1_025514 [Cajanus cajan])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1 

Query: 1  MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPAPK 60
          MG+EILDE+  L PL S++ +    + E   +E+QE  C TPT++     P ++CPP PK
Sbjct: 1  MGLEILDEYRALMPLRSVRTLNQLAEVETASKEEQE--CHTPTSSPP---PTLLCPPPPK 60

Query: 61 KPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKI 98
          KPRP   K      PFF+ P DL SV+     P + I
Sbjct: 61 KPRPCTNKTTLPSQPFFQVPHDLASVFLLRAKPDEPI 92

The following BLAST results are available for this feature:
BLAST of CSPI01G20670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G20670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M005_CUCSA2.7e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426970 PE=4 SV=1[more]
A0A059CL15_EUCGR2.1e-1042.20Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00076 PE=4 SV=1[more]
V7B2R0_PHAVU4.0e-0940.63Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G233800g PE=4 SV=1[more]
A0A0S3RHJ4_PHAAN8.8e-0942.27Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G307200 PE=... [more]
A0A0L9UAV8_PHAAN8.8e-0942.27Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g008100 PE=4 SV=1[more]
BLAST of CSPI01G20670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G20670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210400|gb|KGN65496.1|3.9e-50100.00hypothetical protein Csa_1G426970 [Cucumis sativus][more]
gi|629113935|gb|KCW78610.1|3.0e-1042.20hypothetical protein EUGRSUZ_C00076 [Eucalyptus grandis][more]
gi|593330641|ref|XP_007138747.1|5.7e-0940.63hypothetical protein PHAVU_009G233800g [Phaseolus vulgaris][more]
gi|920696658|gb|KOM39883.1|1.3e-0842.27hypothetical protein LR48_Vigan04g008100 [Vigna angularis][more]
gi|1012341356|gb|KYP52560.1|2.2e-0841.24hypothetical protein KK1_025514 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G20670.1CSPI01G20670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35162FAMILY NOT NAMEDcoord: 28..97
score: 2.2
NoneNo IPR availablePANTHERPTHR35162:SF2SUBFAMILY NOT NAMEDcoord: 28..97
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G20670Cla018869Watermelon (97103) v1cpiwmB087
CSPI01G20670Csa1G426970Cucumber (Chinese Long) v2cpicuB001
CSPI01G20670MELO3C017416Melon (DHL92) v3.5.1cpimeB043
CSPI01G20670ClCG06G013770Watermelon (Charleston Gray)cpiwcgB072
CSPI01G20670Lsi06G012190Bottle gourd (USVL1VR-Ls)cpilsiB060
CSPI01G20670MELO3C017416.2Melon (DHL92) v3.6.1cpimedB037
CSPI01G20670CsaV3_1G031990Cucumber (Chinese Long) v3cpicucB000
CSPI01G20670Cla97C06G123220Watermelon (97103) v2cpiwmbB069
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G20670Cucumber (Gy14) v2cgybcpiB002
CSPI01G20670Cucumber (Gy14) v2cgybcpiB049
CSPI01G20670Silver-seed gourdcarcpiB0625
CSPI01G20670Silver-seed gourdcarcpiB0822
CSPI01G20670Cucumber (Chinese Long) v3cpicucB019
CSPI01G20670Watermelon (97103) v2cpiwmbB022
CSPI01G20670Wax gourdcpiwgoB105
CSPI01G20670Wild cucumber (PI 183967)cpicpiB005
CSPI01G20670Cucumber (Gy14) v1cgycpiB424
CSPI01G20670Cucurbita maxima (Rimu)cmacpiB060
CSPI01G20670Cucurbita maxima (Rimu)cmacpiB099
CSPI01G20670Cucurbita maxima (Rimu)cmacpiB096
CSPI01G20670Cucurbita maxima (Rimu)cmacpiB159
CSPI01G20670Cucurbita moschata (Rifu)cmocpiB052
CSPI01G20670Cucurbita moschata (Rifu)cmocpiB091
CSPI01G20670Cucurbita moschata (Rifu)cmocpiB144
CSPI01G20670Cucumber (Chinese Long) v2cpicuB015
CSPI01G20670Melon (DHL92) v3.5.1cpimeB074
CSPI01G20670Watermelon (Charleston Gray)cpiwcgB010
CSPI01G20670Watermelon (97103) v1cpiwmB081
CSPI01G20670Cucurbita pepo (Zucchini)cpecpiB352
CSPI01G20670Cucurbita pepo (Zucchini)cpecpiB641
CSPI01G20670Cucurbita pepo (Zucchini)cpecpiB807
CSPI01G20670Bottle gourd (USVL1VR-Ls)cpilsiB008
CSPI01G20670Melon (DHL92) v3.6.1cpimedB066