CsaV3_1G030590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030590
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionEnvelope-like protein
Locationchr1 : 17502701 .. 17503015 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTGAATCTGTCCTTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCAAGCCCCAGGGTGTCACCATCAAAACTGGTAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATAGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCGATGAATTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGGTCTATCTCGTACCATCCTGAATGTTAG

mRNA sequence

ATGGGTCGTGAATCTGTCCTTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCAAGCCCCAGGGTGTCACCATCAAAACTGGTAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATAGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCGATGAATTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGGTCTATCTCGTACCATCCTGAATGTTAG

Coding sequence (CDS)

ATGGGTCGTGAATCTGTCCTTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCAAGCCCCAGGGTGTCACCATCAAAACTGGTAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATAGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCGATGAATTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGGTCTATCTCGTACCATCCTGAATGTTAG

Protein sequence

MGRESVLPPTTARTSNPLSPPQSTTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRWKYVVQRHLADELNVSDKHQSCVTIIDLISQVWSISYHPEC
Homology
[Close]
BLAST of CsaV3_1G030590 vs. NCBI nr
Match: XP_011659856.1 (PREDICTED: cell wall protein RBR3-like [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 24  TTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRWKYVVQRHLADELNVSDKHQ 83
           T  P+P+GVTIKTGRR LP NIPSVPID ISFHHEENAQ W++VVQ  LADE+N+S KHQ
Sbjct: 173 TKVPEPRGVTIKTGRRCLPRNIPSVPIDGISFHHEENAQCWRFVVQTRLADEVNISYKHQ 232

Query: 84  SCVTIIDLISQ 95
           SCV I++LI+Q
Sbjct: 233 SCVAIMELINQ 243

[Close]
BLAST of CsaV3_1G030590 vs. NCBI nr
Match: XP_008460264.1 (PREDICTED: uncharacterized protein LOC103499143 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 7.1e-19
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 0 

Query: 6   VLPPTTARTSNPLSPPQSTTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRWK 65
           V+PP +A      +P +     K + +T KTG +++P NIPS+PID ISFHHEE+ Q WK
Sbjct: 220 VVPPASADIPAASNPAEKKAQQKRRNITTKTGWKKIPPNIPSIPIDGISFHHEESVQCWK 279

Query: 66  YVVQRHLADELNVSDKHQSCVTIIDLISQ 95
           +V+QR +ADE+NVSDKHQSC++I+DLI +
Sbjct: 280 FVMQRRIADEVNVSDKHQSCMSIMDLIER 308

[Close]
BLAST of CsaV3_1G030590 vs. NCBI nr
Match: XP_008456227.1 (PREDICTED: uncharacterized protein LOC103496232 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 0 

Query: 7   LPPTTARTSNPLSPPQSTTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRWKY 66
           +PP+++     L P +  +    +  T K GR+++P NIPSVPID I FHHEEN Q WK+
Sbjct: 131 VPPSSSEVPVALKPVKRKSQQNRRNKTTKIGRKKVPPNIPSVPIDGILFHHEENVQCWKF 190

Query: 67  VVQRHLADELNVSDKHQSCVTIIDLISQ 95
           VVQR LADE+NVSDKHQSC++I+DLI +
Sbjct: 191 VVQRWLADEVNVSDKHQSCMSIMDLIER 218

[Close]
BLAST of CsaV3_1G030590 vs. NCBI nr
Match: XP_008465030.1 (PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 0 

Query: 4   ESVLPPTTARTSNPLSP-----PQSTTSPKP---------QGVTIKTGRRRLPHNIPSVP 63
           E + PP    T +P++P      +S  SPKP         + VT KT R+++P N+PSVP
Sbjct: 185 EDIPPP----TDDPIAPSSEGRQESLKSPKPPKRKTQQARRNVTTKTDRKKIPANVPSVP 244

Query: 64  IDSISFHHEENAQRWKYVVQRHLADELNVSDKHQSCVTIIDLI 93
           ID ISFHHEE+ Q WK+V+Q+ + DE+N+SDKHQSC++I+DLI
Sbjct: 245 IDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDLI 283

[Close]
BLAST of CsaV3_1G030590 vs. NCBI nr
Match: XP_008450214.1 (PREDICTED: uncharacterized protein LOC103491875 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 6.7e-17
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 0 

Query: 8   PPTTARTSN-PLS--PPQSTTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRW 67
           P TT  +S  P++  P +  +    + +T KTGR+++P NIPSVPID ISFHHEEN QR 
Sbjct: 129 PATTLNSSEVPVAQKPIKRKSQQNRRNITTKTGRKKIPPNIPSVPIDGISFHHEENVQRL 188

Query: 68  KYVVQRHLADELNVSDKHQSCVTIIDLISQVWSI 99
           K++VQR LA E+NVSDKHQSC++I+DLI +  ++
Sbjct: 189 KFMVQRRLAVEVNVSDKHQSCMSIMDLIKRAGNV 222

[Close]
BLAST of CsaV3_1G030590 vs. TrEMBL
Match: tr|A0A1S3CDC6|A0A1S3CDC6_CUCME (uncharacterized protein LOC103499143 OS=Cucumis melo OX=3656 GN=LOC103499143 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 0 

Query: 6   VLPPTTARTSNPLSPPQSTTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRWK 65
           V+PP +A      +P +     K + +T KTG +++P NIPS+PID ISFHHEE+ Q WK
Sbjct: 220 VVPPASADIPAASNPAEKKAQQKRRNITTKTGWKKIPPNIPSIPIDGISFHHEESVQCWK 279

Query: 66  YVVQRHLADELNVSDKHQSCVTIIDLISQ 95
           +V+QR +ADE+NVSDKHQSC++I+DLI +
Sbjct: 280 FVMQRRIADEVNVSDKHQSCMSIMDLIER 308

[Close]
BLAST of CsaV3_1G030590 vs. TrEMBL
Match: tr|A0A1S3C405|A0A1S3C405_CUCME (uncharacterized protein LOC103496232 OS=Cucumis melo OX=3656 GN=LOC103496232 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 0 

Query: 7   LPPTTARTSNPLSPPQSTTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRWKY 66
           +PP+++     L P +  +    +  T K GR+++P NIPSVPID I FHHEEN Q WK+
Sbjct: 131 VPPSSSEVPVALKPVKRKSQQNRRNKTTKIGRKKVPPNIPSVPIDGILFHHEENVQCWKF 190

Query: 67  VVQRHLADELNVSDKHQSCVTIIDLISQ 95
           VVQR LADE+NVSDKHQSC++I+DLI +
Sbjct: 191 VVQRWLADEVNVSDKHQSCMSIMDLIER 218

[Close]
BLAST of CsaV3_1G030590 vs. TrEMBL
Match: tr|A0A1S3CMY0|A0A1S3CMY0_CUCME (uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 0 

Query: 4   ESVLPPTTARTSNPLSP-----PQSTTSPKP---------QGVTIKTGRRRLPHNIPSVP 63
           E + PP    T +P++P      +S  SPKP         + VT KT R+++P N+PSVP
Sbjct: 185 EDIPPP----TDDPIAPSSEGRQESLKSPKPPKRKTQQARRNVTTKTDRKKIPANVPSVP 244

Query: 64  IDSISFHHEENAQRWKYVVQRHLADELNVSDKHQSCVTIIDLI 93
           ID ISFHHEE+ Q WK+V+Q+ + DE+N+SDKHQSC++I+DLI
Sbjct: 245 IDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDLI 283

[Close]
BLAST of CsaV3_1G030590 vs. TrEMBL
Match: tr|A0A1S3BN53|A0A1S3BN53_CUCME (uncharacterized protein LOC103491875 OS=Cucumis melo OX=3656 GN=LOC103491875 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.4e-17
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 0 

Query: 8   PPTTARTSN-PLS--PPQSTTSPKPQGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRW 67
           P TT  +S  P++  P +  +    + +T KTGR+++P NIPSVPID ISFHHEEN QR 
Sbjct: 129 PATTLNSSEVPVAQKPIKRKSQQNRRNITTKTGRKKIPPNIPSVPIDGISFHHEENVQRL 188

Query: 68  KYVVQRHLADELNVSDKHQSCVTIIDLISQVWSI 99
           K++VQR LA E+NVSDKHQSC++I+DLI +  ++
Sbjct: 189 KFMVQRRLAVEVNVSDKHQSCMSIMDLIKRAGNV 222

[Close]
BLAST of CsaV3_1G030590 vs. TrEMBL
Match: tr|A0A1S3CND8|A0A1S3CND8_CUCME (uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.4e-17
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 11  TARTSNPLSPPQSTTSPKP-----QGVTIKTGRRRLPHNIPSVPIDSISFHHEENAQRWK 70
           +A+   P  P +  +S K      + +T K GR+++P NIPSVPI  ISFHHEEN QRWK
Sbjct: 86  SAQQQTPSVPTERKSSRKKGQQLRRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWK 145

Query: 71  YVVQRHLADELNVSDKHQSCVTIIDLISQ 95
           +VVQR +ADE+N+S+KH SCV+II+LI +
Sbjct: 146 FVVQRRIADEVNISNKHHSCVSIINLIEK 174

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659856.12.0e-2173.24PREDICTED: cell wall protein RBR3-like [Cucumis sativus][more]
XP_008460264.17.1e-1952.81PREDICTED: uncharacterized protein LOC103499143 [Cucumis melo][more]
XP_008456227.14.6e-1854.55PREDICTED: uncharacterized protein LOC103496232 [Cucumis melo][more]
XP_008465030.12.3e-1748.54PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo][more]
XP_008450214.16.7e-1753.19PREDICTED: uncharacterized protein LOC103491875 [Cucumis melo][more]
BLAST of CsaV3_1G030590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030590 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDC6|A0A1S3CDC6_CUCME4.7e-1952.81uncharacterized protein LOC103499143 OS=Cucumis melo OX=3656 GN=LOC103499143 PE=... [more]
tr|A0A1S3C405|A0A1S3C405_CUCME3.0e-1854.55uncharacterized protein LOC103496232 OS=Cucumis melo OX=3656 GN=LOC103496232 PE=... [more]
tr|A0A1S3CMY0|A0A1S3CMY0_CUCME1.5e-1748.54uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=... [more]
tr|A0A1S3BN53|A0A1S3BN53_CUCME4.4e-1753.19uncharacterized protein LOC103491875 OS=Cucumis melo OX=3656 GN=LOC103491875 PE=... [more]
tr|A0A1S3CND8|A0A1S3CND8_CUCME4.4e-1752.81uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030590.1CsaV3_1G030590.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..32

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G030590CSPI01G19360Wild cucumber (PI 183967)cpicucB000
CsaV3_1G030590Cucsa.235610Cucumber (Gy14) v1cgycucB353
CsaV3_1G030590CsGy1G019170Cucumber (Gy14) v2cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030590Cucurbita pepo (Zucchini)cpecucB0105
CsaV3_1G030590Cucurbita pepo (Zucchini)cpecucB0434
CsaV3_1G030590Cucurbita pepo (Zucchini)cpecucB0800
CsaV3_1G030590Wild cucumber (PI 183967)cpicucB073
CsaV3_1G030590Bottle gourd (USVL1VR-Ls)cuclsiB010
CsaV3_1G030590Bottle gourd (USVL1VR-Ls)cuclsiB072
CsaV3_1G030590Melon (DHL92) v3.5.1cucmeB058
CsaV3_1G030590Melon (DHL92) v3.5.1cucmeB082
CsaV3_1G030590Melon (DHL92) v3.6.1cucmedB055
CsaV3_1G030590Melon (DHL92) v3.6.1cucmedB076
CsaV3_1G030590Watermelon (Charleston Gray)cucwcgB009
CsaV3_1G030590Watermelon (97103) v1cucwmB090
CsaV3_1G030590Wax gourdcucwgoB108
CsaV3_1G030590Cucumber (Chinese Long) v3cuccucB009
CsaV3_1G030590Silver-seed gourdcarcucB0040
CsaV3_1G030590Silver-seed gourdcarcucB0144
CsaV3_1G030590Silver-seed gourdcarcucB0603
CsaV3_1G030590Cucumber (Gy14) v2cgybcucB059
CsaV3_1G030590Cucurbita maxima (Rimu)cmacucB0073
CsaV3_1G030590Cucurbita maxima (Rimu)cmacucB0116
CsaV3_1G030590Cucurbita moschata (Rifu)cmocucB0060
CsaV3_1G030590Cucurbita moschata (Rifu)cmocucB0104