CSPI01G19360 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G19360
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 14801743 .. 14802072 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTGAATCTGTCCCTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCGAGCCTCAGGGTGTCACCATCAAAACTGGTAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATGGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCGATGAAGTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGCTCTATCTCGTACCATTCTGAATGTTAGGTCGTTCTATCCAAG

mRNA sequence

ATGGGTCGTGAATCTGTCCCTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCGAGCCTCAGGGTGTCACCATCAAAACTGGTAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATGGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCGATGAAGTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGCTCTATCTCGTACCATTCTGAATGTTAG

Coding sequence (CDS)

ATGGGTCGTGAATCTGTCCCTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCGAGCCTCAGGGTGTCACCATCAAAACTGGTAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATGGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCGATGAAGTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGCTCTATCTCGTACCATTCTGAATGTTAG
Homology
[Close]
BLAST of CSPI01G19360 vs. TrEMBL
Match: A0A0A0LIG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G231965 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.2e-14
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1 

Query: 32  VTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDL 91
           +  K G+R+L   IP V IDGISFHHEE+AQRWKYV+QR + DEVN+S+KH S +++ +L
Sbjct: 70  IPTKIGKRKLSPKIPFVSIDGISFHHEESAQRWKYVIQRRIDDEVNISNKHHSYISVTEL 129

Query: 92  ISQV 96
           I +V
Sbjct: 130 IIKV 133

[Close]
BLAST of CSPI01G19360 vs. TrEMBL
Match: A0A0A0L3U9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507410 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 1 

Query: 4   ESVPPP---TTARTSNPLS--PPQSTTSPEPQG------------------VTIKTGRRR 63
           ES PP    TT    +P++  P   T  P P                    VTIK+ RR+
Sbjct: 45  ESTPPTEPSTTILDPSPITNNPTHHTVEPAPTSKFGSSKFQTCFPSHGQKVVTIKSDRRK 104

Query: 64  LPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQV 96
           L  NI   P+DGISFH E+   +WKYVVQR +ADE  +S +H  CV +++LI  V
Sbjct: 105 LLPNIHVDPLDGISFHSEDGVLKWKYVVQRCIADECEISYQHHFCVAVMNLIRSV 159

[Close]
BLAST of CSPI01G19360 vs. NCBI nr
Match: gi|778730782|ref|XP_011659856.1| (PREDICTED: cell wall protein RBR3-like [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-24
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 1 

Query: 7   PPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKY 66
           P   T       SPP  T  PEP+GVTIKTGRR LP NIPSVPIDGISFHHEENAQ W++
Sbjct: 156 PSSATKEADKTSSPPPQTKVPEPRGVTIKTGRRCLPRNIPSVPIDGISFHHEENAQCWRF 215

Query: 67  VVQRHLADEVNVSDKHQSCVTIIDLISQ 95
           VVQ  LADEVN+S KHQSCV I++LI+Q
Sbjct: 216 VVQTRLADEVNISYKHQSCVAIMELINQ 243

[Close]
BLAST of CSPI01G19360 vs. NCBI nr
Match: gi|659112449|ref|XP_008456227.1| (PREDICTED: uncharacterized protein LOC103496232 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 6.2e-19
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 8   PPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYV 67
           PP+++     L P +  +    +  T K GR+++P NIPSVPIDGI FHHEEN Q WK+V
Sbjct: 132 PPSSSEVPVALKPVKRKSQQNRRNKTTKIGRKKVPPNIPSVPIDGILFHHEENVQCWKFV 191

Query: 68  VQRHLADEVNVSDKHQSCVTIIDLISQ 95
           VQR LADEVNVSDKHQSC++I+DLI +
Sbjct: 192 VQRWLADEVNVSDKHQSCMSIMDLIER 218

[Close]
BLAST of CSPI01G19360 vs. NCBI nr
Match: gi|659130162|ref|XP_008465030.1| (PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 6.2e-19
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 4   ESVPPPTTARTSNPLSPP-----QSTTSPEP---------QGVTIKTGRRRLPHNIPSVP 63
           E +PPPT     +P++P      +S  SP+P         + VT KT R+++P N+PSVP
Sbjct: 185 EDIPPPT----DDPIAPSSEGRQESLKSPKPPKRKTQQARRNVTTKTDRKKIPANVPSVP 244

Query: 64  IDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLI 93
           IDGISFHHEE+ Q WK+V+Q+ + DEVN+SDKHQSC++I+DLI
Sbjct: 245 IDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDLI 283

[Close]
BLAST of CSPI01G19360 vs. NCBI nr
Match: gi|659120594|ref|XP_008460264.1| (PREDICTED: actin cytoskeleton-regulatory complex protein pan1-like [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 6.2e-19
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1 

Query: 6   VPPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWK 65
           V PP +A      +P +     + + +T KTG +++P NIPS+PIDGISFHHEE+ Q WK
Sbjct: 220 VVPPASADIPAASNPAEKKAQQKRRNITTKTGWKKIPPNIPSIPIDGISFHHEESVQCWK 279

Query: 66  YVVQRHLADEVNVSDKHQSCVTIIDLISQ 95
           +V+QR +ADEVNVSDKHQSC++I+DLI +
Sbjct: 280 FVMQRRIADEVNVSDKHQSCMSIMDLIER 308

[Close]
BLAST of CSPI01G19360 vs. NCBI nr
Match: gi|659131751|ref|XP_008465838.1| (PREDICTED: uncharacterized protein LOC103503432 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-18
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 1 

Query: 3   RESVPPPTTART----------SNPLSPPQSTTSPEPQGVTIKTGR--------RRLPHN 62
           RE +PP T   T          S    PP+  T    + +T KTGR        +++P N
Sbjct: 59  REDIPPSTNDPTAPSTEGRPESSKVSQPPKRKTQQVRRNITTKTGRKKIPVNIRKKIPVN 118

Query: 63  IPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLI 93
           IPSVPIDGI FHH+EN Q WK+VVQR +ADEVN+SDKHQSCV+I+DLI
Sbjct: 119 IPSVPIDGIFFHHKENVQCWKFVVQRRIADEVNISDKHQSCVSIMDLI 166

The following BLAST results are available for this feature:
BLAST of CSPI01G19360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G19360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIG9_CUCSA7.2e-1457.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G231965 PE=4 SV=1[more]
A0A0A0L3U9_CUCSA1.2e-0839.13Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507410 PE=4 SV=1[more]
BLAST of CSPI01G19360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G19360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730782|ref|XP_011659856.1|2.9e-2468.18PREDICTED: cell wall protein RBR3-like [Cucumis sativus][more]
gi|659112449|ref|XP_008456227.1|6.2e-1957.47PREDICTED: uncharacterized protein LOC103496232 [Cucumis melo][more]
gi|659130162|ref|XP_008465030.1|6.2e-1950.49PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo][more]
gi|659120594|ref|XP_008460264.1|6.2e-1953.93PREDICTED: actin cytoskeleton-regulatory complex protein pan1-like [Cucumis melo... [more]
gi|659131751|ref|XP_008465838.1|4.0e-1850.93PREDICTED: uncharacterized protein LOC103503432 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G19360.1CSPI01G19360.1mRNA