CsaV3_1G029600 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G029600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGlutamate receptor
Locationchr1 : 16381501 .. 16381760 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGATCGGTGCACTCTTCCTTAACATATTAGTACTGTCGGTAGTGGCAGCAGAGGCGGACAAGACGGCTGCGGCGGTAAACTTGAAGGTGGGTGTGGTTTTGGATTTGAATGATGTTGTTGGGAAGATGGGTTCGAGTTGCATTAATATGACGCTCTCTGATTTTTATGCCAATCGAAGTTATTATAAGACGAAATTGATTCTCAATCCCATGGACTCCAATGGAACGAACTATCGTTGGTGCAGCTACAGTAG

mRNA sequence

ATGTTGAAGATCGGTGCACTCTTCCTTAACATATTAGTACTGTCGGTAGTGGCAGCAGAGGCGGACAAGACGGCTGCGGCGGTAAACTTGAAGGTGGGTGTGGTTTTGGATTTGAATGATGTTGTTGGGAAGATGGGTTCGAGTTGCATTAATATGACGCTCTCTGATTTTTATGCCAATCGAAGTTATTATAAGACGAAATTGATTCTCAATCCCATGGACTCCAATGGAACGAACTATCGTTGGTGCAGCTACAGTAG

Coding sequence (CDS)

ATGTTGAAGATCGGTGCACTCTTCCTTAACATATTAGTACTGTCGGTAGTGGCAGCAGAGGCGGACAAGACGGCTGCGGCGGTAAACTTGAAGGTGGGTGTGGTTTTGGATTTGAATGATGTTGTTGGGAAGATGGGTTCGAGTTGCATTAATATGACGCTCTCTGATTTTTATGCCAATCGAAGTTATTATAAGACGAAATTGATTCTCAATCCCATGGACTCCAATGGAACGAACTATCGTTGGTGCAGCTACAGTAG

Protein sequence

MLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDSNGTNYRWCSYSX
BLAST of CsaV3_1G029600 vs. NCBI nr
Match: KGN47385.1 (hypothetical protein Csa_6G308940 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-33
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYAN 60
          MLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLN VVGKMG SC NMTLSDFYAN
Sbjct: 9  MLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLN-VVGKMGLSCTNMTLSDFYAN 68

Query: 61 RSYYKTKLILNPMDSNGTNYRWCSYS 87
          RSYYKTKLILNPMDSNGTNY WC+Y+
Sbjct: 69 RSYYKTKLILNPMDSNGTNYCWCNYN 93

BLAST of CsaV3_1G029600 vs. NCBI nr
Match: XP_023002214.1 (glutamate receptor 2.2-like [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 7  LFLNIL--VLSVVAAEADKTAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYY 66
          +FLN+L  V +   A  ++ A  V +KVGVVLDLN VVG+MG SC++M L+D Y++RSYY
Sbjct: 19 VFLNMLVTVATTEMAAEEEAAGKVKVKVGVVLDLNLVVGQMGLSCVSMALADLYSSRSYY 78

Query: 67 KTKLILNPMDSNGT 79
          KT++ L+ +DSN T
Sbjct: 79 KTRVTLSTIDSNDT 92

BLAST of CsaV3_1G029600 vs. NCBI nr
Match: XP_012455154.1 (PREDICTED: glutamate receptor 2.8-like [Gossypium raimondii] >XP_012455221.1 PREDICTED: glutamate receptor 2.8-like [Gossypium raimondii] >KJB07709.1 hypothetical protein B456_001G039900 [Gossypium raimondii])

HSP 1 Score: 72.4 bits (176), Expect = 8.5e-10
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 7  LFLNILVLSVVAAEADKTA--AAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYY 66
          LFLN+ +   V A++  T   A + +KVGVVLD++ +VGK+G SC+NM LSDFYA   +Y
Sbjct: 19 LFLNVCLSEGVVAQSQNTTGDATIPVKVGVVLDMDSLVGKIGMSCMNMALSDFYATHPHY 78

Query: 67 KTKLILNPMDSNG 78
          KT+L+ N  DS G
Sbjct: 79 KTRLVFNTKDSMG 91

BLAST of CsaV3_1G029600 vs. NCBI nr
Match: XP_016744596.1 (PREDICTED: glutamate receptor 2.8-like [Gossypium hirsutum])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 7  LFLNILVLSVVAAEADKTA--AAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYY 66
          LFLN+     V A++  T   A + +KVGVVLD++ +VGK+G SC+NM LSDFYA   +Y
Sbjct: 19 LFLNVCFSEGVVAQSQNTTGDATIPVKVGVVLDMDSLVGKIGMSCMNMALSDFYATHPHY 78

Query: 67 KTKLILNPMDSNG 78
          KT+L+ N  DS G
Sbjct: 79 KTRLVFNTKDSMG 91

BLAST of CsaV3_1G029600 vs. NCBI nr
Match: XP_023537857.1 (glutamate receptor 2.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 24 TAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDSNGT 79
          T AAV +KVGVVL+ N   GKMG +CI+M LSDFYA+RS+YKTK+IL  +DSNGT
Sbjct: 25 TVAAVEVKVGVVLNPN-AFGKMGMACISMALSDFYASRSHYKTKVILKTVDSNGT 78

BLAST of CsaV3_1G029600 vs. TAIR10
Match: AT5G48400.2 (Glutamate receptor family protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.3e-07
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 28 VNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDSNG 78
          + ++VG+VLDL  V GK+  S ++M LSDFY N + YKT+L L   DS+G
Sbjct: 38 IRVRVGLVLDLGSVEGKIVRSSVSMALSDFYDNHNDYKTRLSLLVRDSHG 87

BLAST of CsaV3_1G029600 vs. TAIR10
Match: AT2G29110.1 (glutamate receptor 2.8)

HSP 1 Score: 46.6 bits (109), Expect = 9.1e-06
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 30 LKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDS 76
          +KVGVVLDLN    K+  + IN+ LSDFY +   Y+T+L L+  DS
Sbjct: 33 IKVGVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDS 78

BLAST of CsaV3_1G029600 vs. TAIR10
Match: AT2G29100.1 (glutamate receptor 2.9)

HSP 1 Score: 44.7 bits (104), Expect = 3.5e-05
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 30 LKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDS 76
          +KVGVVLDLN    K+  + I M +SDFYA+   Y T+L L+  DS
Sbjct: 30 IKVGVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDS 75

BLAST of CsaV3_1G029600 vs. TAIR10
Match: AT5G11180.1 (glutamate receptor 2.6)

HSP 1 Score: 44.7 bits (104), Expect = 3.5e-05
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0

Query: 8  FLNILVLSVVAAEADKTAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTK 67
          F+N LVL             + ++VG+VLD N  +  +    INM+LS+FY   + +KT+
Sbjct: 19 FINFLVLL-----GKSQQEVLQVQVGIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTR 78

Query: 68 LILNPMDSNGT 79
          ++LN  DS  T
Sbjct: 79 IVLNIRDSKRT 84

BLAST of CsaV3_1G029600 vs. TAIR10
Match: AT2G29120.1 (glutamate receptor 2.7)

HSP 1 Score: 42.4 bits (98), Expect = 1.7e-04
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 30 LKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDS 76
          +KVGVVLDL+    K+  + IN++LSDFY   S Y T+L ++  DS
Sbjct: 39 IKVGVVLDLHTSFSKLCLTSINISLSDFYKYHSDYTTRLAIHIRDS 84

BLAST of CsaV3_1G029600 vs. Swiss-Prot
Match: sp|Q9LV72|GLR12_ARATH (Glutamate receptor 1.2 OS=Arabidopsis thaliana OX=3702 GN=GLR1.2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-05
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 28 VNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDSNG 78
          + ++VG+VLDL  V GK+  S ++M LSDFY N + YKT+L L   DS+G
Sbjct: 38 IRVRVGLVLDLGSVEGKIVRSSVSMALSDFYDNHNDYKTRLSLLVRDSHG 87

BLAST of CsaV3_1G029600 vs. Swiss-Prot
Match: sp|Q9C5V5|GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 30 LKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDS 76
          +KVGVVLDLN    K+  + IN+ LSDFY +   Y+T+L L+  DS
Sbjct: 33 IKVGVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDS 78

BLAST of CsaV3_1G029600 vs. Swiss-Prot
Match: sp|Q9LFN5|GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana OX=3702 GN=GLR2.5 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 7  LFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKT 66
          +FL  LVLS+  ++ +    A+ +KVG+VL  N  +  +    INM+LS+FY   + +KT
Sbjct: 18 IFLVFLVLSLGKSQKE----ALQVKVGIVLGSNVTLADLSLRAINMSLSEFYNTHNGFKT 77

Query: 67 KLILNPMDSNGT 79
          +++LN  DS  T
Sbjct: 78 RIVLNVRDSKQT 85

BLAST of CsaV3_1G029600 vs. Swiss-Prot
Match: sp|Q9LFN8|GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana OX=3702 GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-04
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0

Query: 8  FLNILVLSVVAAEADKTAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTK 67
          F+N LVL             + ++VG+VLD N  +  +    INM+LS+FY   + +KT+
Sbjct: 19 FINFLVLL-----GKSQQEVLQVQVGIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTR 78

Query: 68 LILNPMDSNGT 79
          ++LN  DS  T
Sbjct: 79 IVLNIRDSKRT 84

BLAST of CsaV3_1G029600 vs. Swiss-Prot
Match: sp|O81078|GLR29_ARATH (Glutamate receptor 2.9 OS=Arabidopsis thaliana OX=3702 GN=GLR2.9 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-04
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 30 LKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDS 76
          +KVGVVLDLN    K+  + I M +SDFYA+   Y T+L L+  DS
Sbjct: 30 IKVGVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDS 75

BLAST of CsaV3_1G029600 vs. TrEMBL
Match: tr|A0A0A0KCD3|A0A0A0KCD3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G308940 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYAN 60
          MLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLN VVGKMG SC NMTLSDFYAN
Sbjct: 9  MLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLN-VVGKMGLSCTNMTLSDFYAN 68

Query: 61 RSYYKTKLILNPMDSNGTNYRWCSYS 87
          RSYYKTKLILNPMDSNGTNY WC+Y+
Sbjct: 69 RSYYKTKLILNPMDSNGTNYCWCNYN 93

BLAST of CsaV3_1G029600 vs. TrEMBL
Match: tr|A0A0D2PLI2|A0A0D2PLI2_GOSRA (Glutamate receptor OS=Gossypium raimondii OX=29730 GN=B456_001G039900 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.6e-10
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 7  LFLNILVLSVVAAEADKTA--AAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYY 66
          LFLN+ +   V A++  T   A + +KVGVVLD++ +VGK+G SC+NM LSDFYA   +Y
Sbjct: 19 LFLNVCLSEGVVAQSQNTTGDATIPVKVGVVLDMDSLVGKIGMSCMNMALSDFYATHPHY 78

Query: 67 KTKLILNPMDSNG 78
          KT+L+ N  DS G
Sbjct: 79 KTRLVFNTKDSMG 91

BLAST of CsaV3_1G029600 vs. TrEMBL
Match: tr|A0A1U8P056|A0A1U8P056_GOSHI (Glutamate receptor OS=Gossypium hirsutum OX=3635 GN=LOC107953718 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.6e-10
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 7  LFLNILVLSVVAAEADKTA--AAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYY 66
          LFLN+     V A++  T   A + +KVGVVLD++ +VGK+G SC+NM LSDFYA   +Y
Sbjct: 19 LFLNVCFSEGVVAQSQNTTGDATIPVKVGVVLDMDSLVGKIGMSCMNMALSDFYATHPHY 78

Query: 67 KTKLILNPMDSNG 78
          KT+L+ N  DS G
Sbjct: 79 KTRLVFNTKDSMG 91

BLAST of CsaV3_1G029600 vs. TrEMBL
Match: tr|A0A2P5RK57|A0A2P5RK57_GOSBA (Glutamate receptor OS=Gossypium barbadense OX=3634 GN=GOBAR_DD15879 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 7  LFLNILVLSVVAAEADKTA--AAVNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYY 66
          LFLN+ +   V A++  T   A + +KVGVVLD++ +VGK+G SC+NM LS+FYA   +Y
Sbjct: 19 LFLNVCLSEGVVAQSQNTTGDATIPVKVGVVLDMDSLVGKIGMSCMNMALSEFYATHPHY 78

Query: 67 KTKLILNPMDSNG 78
          KT+L+ N  DS G
Sbjct: 79 KTRLVFNTKDSMG 91

BLAST of CsaV3_1G029600 vs. TrEMBL
Match: tr|A0A1S3BCB6|A0A1S3BCB6_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488369 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 28 VNLKVGVVLDLNDVVGKMGSSCINMTLSDFYANRSYYKTKLILNPMDSNGT 79
          V +KVGVV D +D  GK+  SCI+M LSDFYA+RSYYKT+++L PMDSNGT
Sbjct: 41 VKVKVGVVFDWDD-YGKVDFSCISMALSDFYASRSYYKTRVVLKPMDSNGT 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN47385.12.5e-3393.02hypothetical protein Csa_6G308940 [Cucumis sativus][more]
XP_023002214.15.0e-1052.70glutamate receptor 2.2-like [Cucurbita maxima][more]
XP_012455154.18.5e-1050.68PREDICTED: glutamate receptor 2.8-like [Gossypium raimondii] >XP_012455221.1 PRE... [more]
XP_016744596.11.5e-0950.68PREDICTED: glutamate receptor 2.8-like [Gossypium hirsutum][more]
XP_023537857.11.5e-0967.27glutamate receptor 2.1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G48400.26.3e-0750.00Glutamate receptor family protein[more]
AT2G29110.19.1e-0650.00glutamate receptor 2.8[more]
AT2G29100.13.5e-0550.00glutamate receptor 2.9[more]
AT5G11180.13.5e-0535.21glutamate receptor 2.6[more]
AT2G29120.11.7e-0447.83glutamate receptor 2.7[more]
Match NameE-valueIdentityDescription
sp|Q9LV72|GLR12_ARATH1.1e-0550.00Glutamate receptor 1.2 OS=Arabidopsis thaliana OX=3702 GN=GLR1.2 PE=2 SV=1[more]
sp|Q9C5V5|GLR28_ARATH1.6e-0450.00Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2[more]
sp|Q9LFN5|GLR25_ARATH2.8e-0437.50Glutamate receptor 2.5 OS=Arabidopsis thaliana OX=3702 GN=GLR2.5 PE=2 SV=2[more]
sp|Q9LFN8|GLR26_ARATH6.2e-0435.21Glutamate receptor 2.6 OS=Arabidopsis thaliana OX=3702 GN=GLR2.6 PE=2 SV=2[more]
sp|O81078|GLR29_ARATH6.2e-0450.00Glutamate receptor 2.9 OS=Arabidopsis thaliana OX=3702 GN=GLR2.9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KCD3|A0A0A0KCD3_CUCSA1.6e-3393.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G308940 PE=4 SV=1[more]
tr|A0A0D2PLI2|A0A0D2PLI2_GOSRA5.6e-1050.68Glutamate receptor OS=Gossypium raimondii OX=29730 GN=B456_001G039900 PE=3 SV=1[more]
tr|A0A1U8P056|A0A1U8P056_GOSHI9.6e-1050.68Glutamate receptor OS=Gossypium hirsutum OX=3635 GN=LOC107953718 PE=3 SV=1[more]
tr|A0A2P5RK57|A0A2P5RK57_GOSBA1.6e-0949.32Glutamate receptor OS=Gossypium barbadense OX=3634 GN=GOBAR_DD15879 PE=3 SV=1[more]
tr|A0A1S3BCB6|A0A1S3BCB6_CUCME2.8e-0966.67Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488369 PE=3 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0035235 ionotropic glutamate receptor signaling pathway
biological_process GO:0006811 ion transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0004970 ionotropic glutamate receptor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G029600.1CsaV3_1G029600.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34836FAMILY NOT NAMEDcoord: 6..76

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G029600CsGy1G018460Cucumber (Gy14) v2cgybcucB001
The following gene(s) are paralogous to this gene:

None