CsaV3_1G029320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G029320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr1 : 16119631 .. 16120819 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATAATTTACCAATAATTACTAATAACTTCTACCCATTTGTATCATGTTAAAAAAAATGCCATTAATTAATGGGCAGACCGATCAAAGCTAAGCAGACTGTGAGATAGATATAGGCATAATATTTGTATGTGTATTATTAGTCTTTTGTTAGTGCAAATCTCAGTCACCACCTTCTCGAAATTTCCATCCAACTTTATGGTGAGCATATGTAGCCCTCCTAGTCGTACCCACCGCACAATTTCAAATTAAAACCTAAATGTATTTCTCTAAAAATAATCCAAACCAAAAACAAAAGATAGTGGCCAAAAAGAAAAAAAGAGAAACACTCGAGAGATCGGCTTGCGCATGCTACTCCACTATTCCATGCCGCAATCTATATGCGCATGCCACATGGCGCATACTCAACCCTGCTTTCTTCCTTCATATGATCCTATAAATACCCAACACTTCTCACTTTAACTTCACTTAACACAATATATATACACTCTTTTAATTTCCTCATTCTCTTAATTAAACCTCTTTCATTAATAACAATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCCGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGGGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCCGGTTATGGAGGAGGGCATGGAAAATAAGATGTTATTATTTTCAATTAACAAGGTGATTATTAAAAGATATATATAATTATGGTAATTATGGTTACTATGTAATGAATTAGTATCTACAATATAGAATGATCAATAAGATTTTCTACAATGTATCATATTTACATTCGAGAAATTAATGGAACCATATTTGTGATATATAAACTCTATATATATACGAGTGGTAAAGACATTTGTCATCTCCATCTCATATGTTTGGTATCTACAATTTAAAATTTTTAACATAATTATATTCTA

mRNA sequence

ATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCCGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGGGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCCGGTTATGGAGGAGGGCATGGAAAATAA

Coding sequence (CDS)

ATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCCGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGGGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCCGGTTATGGAGGAGGGCATGGAAAATAA

Protein sequence

MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSGSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGSGYGGGHGK
Homology
[Close]
BLAST of CsaV3_1G029320 vs. NCBI nr
Match: XP_004146662.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus] >KGN65262.1 hypothetical protein Csa_1G277980 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 6.5e-06
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLD 35
          MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLD
Sbjct: 1  MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLD 34

[Close]
BLAST of CsaV3_1G029320 vs. TrEMBL
Match: tr|A0A0A0LWP0|A0A0A0LWP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLD 35
          MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLD
Sbjct: 1  MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLD 34

[Close]
BLAST of CsaV3_1G029320 vs. TrEMBL
Match: tr|A0A1S4DUX4|A0A1S4DUX4_CUCME (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.0e-04
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1  MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLD 35
          MGSLKSLVLAALLVSS FVV SQSRVARKDLGLD
Sbjct: 1  MGSLKSLVLAALLVSSFFVV-SQSRVARKDLGLD 33

The following BLAST results are available for this feature:
BLAST of CsaV3_1G029320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146662.16.5e-06100.00PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus] >K... [more]
BLAST of CsaV3_1G029320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G029320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G029320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWP0|A0A0A0LWP0_CUCSA4.3e-06100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1[more]
tr|A0A1S4DUX4|A0A1S4DUX4_CUCME9.0e-0494.12glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G029320.1CsaV3_1G029320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..128
NoneNo IPR availablePANTHERPTHR38934FAMILY NOT NAMEDcoord: 1..127
NoneNo IPR availablePANTHERPTHR38934:SF5GLYCINE-RICH PROTEINcoord: 1..127

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G029320CSPI01G18100Wild cucumber (PI 183967)cpicucB000
CsaV3_1G029320Cucsa.170410Cucumber (Gy14) v1cgycucB272
CsaV3_1G029320CsGy1G018170Cucumber (Gy14) v2cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G029320Cucumber (Chinese Long) v3cuccucB008
CsaV3_1G029320Silver-seed gourdcarcucB0142
CsaV3_1G029320Silver-seed gourdcarcucB0537
CsaV3_1G029320Silver-seed gourdcarcucB0951
CsaV3_1G029320Cucumber (Gy14) v2cgybcucB058
CsaV3_1G029320Cucumber (Gy14) v1cgycucB096
CsaV3_1G029320Cucurbita maxima (Rimu)cmacucB0067
CsaV3_1G029320Cucurbita maxima (Rimu)cmacucB0111
CsaV3_1G029320Cucurbita maxima (Rimu)cmacucB0191
CsaV3_1G029320Cucurbita moschata (Rifu)cmocucB0054
CsaV3_1G029320Cucurbita moschata (Rifu)cmocucB0100
CsaV3_1G029320Cucurbita moschata (Rifu)cmocucB0175
CsaV3_1G029320Cucurbita pepo (Zucchini)cpecucB0429
CsaV3_1G029320Cucurbita pepo (Zucchini)cpecucB0796
CsaV3_1G029320Wild cucumber (PI 183967)cpicucB072
CsaV3_1G029320Bottle gourd (USVL1VR-Ls)cuclsiB008
CsaV3_1G029320Bottle gourd (USVL1VR-Ls)cuclsiB074
CsaV3_1G029320Melon (DHL92) v3.5.1cucmeB054
CsaV3_1G029320Melon (DHL92) v3.5.1cucmeB081
CsaV3_1G029320Melon (DHL92) v3.6.1cucmedB052
CsaV3_1G029320Melon (DHL92) v3.6.1cucmedB075
CsaV3_1G029320Watermelon (Charleston Gray)cucwcgB013
CsaV3_1G029320Watermelon (Charleston Gray)cucwcgB074
CsaV3_1G029320Watermelon (97103) v1cucwmB089
CsaV3_1G029320Watermelon (97103) v1cucwmB091
CsaV3_1G029320Watermelon (97103) v2cucwmbB023
CsaV3_1G029320Watermelon (97103) v2cucwmbB063
CsaV3_1G029320Wax gourdcucwgoB006
CsaV3_1G029320Wax gourdcucwgoB104