CSPI01G18100 (gene) Wild cucumber (PI 183967)

NameCSPI01G18100
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionglycine-rich protein
LocationChr1 : 13583159 .. 13583842 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTAACACAATATATATATACACTCTTTTAATTTCCTCATTCTCTTAATTAAACCTCTTTCATTAATAACAATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCGGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGTGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCAGGTTATGGAGGTGGGCATGGAAAATAAGATATTATTTTCAATTAACAAGGTGATTATTAAAAGATATATATAATTATGGTAATTATGGTTACTATGTAATGAATTAGTATCTACAATATAGAATGATCAATAAGATTTTCTACAATGTATCATATTTACATTCCAGAAATTAATGGAACCATATTTGTGATATATAAACTCTATATATACACGAGTGGTAAAGACATTTGTCATCTCCATCTCATATGTTTG

mRNA sequence

ATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCGGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGTGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCAGGTTATGGAGGTGGGCATGGAAAATAA

Coding sequence (CDS)

ATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCGGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGTGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCAGGTTATGGAGGTGGGCATGGAAAATAA
BLAST of CSPI01G18100 vs. TrEMBL
Match: A0A0A0LWP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-39
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120
           SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

Query: 121 GYGGGHGK 129
           GYGGGHGK
Sbjct: 121 GYGGGHGK 128

BLAST of CSPI01G18100 vs. TrEMBL
Match: U5FI04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10920g PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18
Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           M   +SL L ALLV  +  + S+SRVARKDLG+DLGGVG+G+G GVG+GLGGSGSG+G+G
Sbjct: 1   MAPYRSLALIALLVI-MSAIESESRVARKDLGVDLGGVGVGLGEGVGVGLGGSGSGSGAG 60

Query: 61  SGSGSGS-----SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--GGEGSG 120
           SGSGSGS     SSSSSSSSS SSSSS  GSD+GSEAGSYAGSRAGSGSGGR  GGEGSG
Sbjct: 61  SGSGSGSGSRSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGEGSG 120

Query: 121 YGGGYGSGYGGGHGK 129
            G G+G GYG G G+
Sbjct: 121 SGSGHGEGYGEGSGR 134

BLAST of CSPI01G18100 vs. TrEMBL
Match: K4CB94_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 94/130 (72.31%), Postives = 108/130 (83.08%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           M  +K+  L  LLV S F+V S+SRVAR DLGL+LGG+G+GVG G+G+G GGSGSGAG+G
Sbjct: 1   MAKVKAFSLLVLLVFSSFIVLSESRVARMDLGLNLGGIGLGVGIGLGLG-GGSGSGAGAG 60

Query: 61  SGSGSGSSSSSSSSSSSSSS--SSGSGSDSGSEAGSYAGSRAGSGSGGRGG-EGSGYGGG 120
           +GSGSGSSSSSSSSSSSSSS    G GS++GS AGSYAGSRAGSGSG RGG  GSGYGGG
Sbjct: 61  AGSGSGSSSSSSSSSSSSSSGGGGGGGSEAGSSAGSYAGSRAGSGSGNRGGSSGSGYGGG 120

Query: 121 YGSGYGGGHG 128
            GSGYGGG+G
Sbjct: 121 QGSGYGGGNG 129

BLAST of CSPI01G18100 vs. TrEMBL
Match: F6HS59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 94/128 (73.44%), Postives = 104/128 (81.25%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           M  L+SL L ALLVSS FVV SQSRVARKDLGLDLGGVG+G+G GVG+GLGGSGSG+GSG
Sbjct: 1   MAGLRSLALVALLVSS-FVVVSQSRVARKDLGLDLGGVGVGLGVGVGLGLGGSGSGSGSG 60

Query: 61  SGSGSGS-SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYG 120
           SGSGSGS +SS + S+SSS S SGSGS++GS AGSYAGSRAGSGSG   G GSG G G G
Sbjct: 61  SGSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQG 120

Query: 121 SGYGGGHG 128
            G G G G
Sbjct: 121 HGQGSGSG 127

BLAST of CSPI01G18100 vs. TrEMBL
Match: M1ASE2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011230 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 93/130 (71.54%), Postives = 108/130 (83.08%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           M  +K+  L  LLV S F+V S+SRVAR DLGL+LGG+G+G+G G+G+G GGSGSGAG+G
Sbjct: 1   MAKVKAFSLLVLLVFSSFIVLSESRVARMDLGLNLGGIGVGLGLGLGLG-GGSGSGAGAG 60

Query: 61  SGSGSGSSSSSSSSSSSSSS--SSGSGSDSGSEAGSYAGSRAGSGSGGRGG-EGSGYGGG 120
           +GSGSGSSSSSSSSSSSSSS    G GS++GS AGSYAGSRAGSGSG RGG  GSGYGGG
Sbjct: 61  AGSGSGSSSSSSSSSSSSSSGGGGGGGSEAGSSAGSYAGSRAGSGSGNRGGSSGSGYGGG 120

Query: 121 YGSGYGGGHG 128
            GSGYGGG+G
Sbjct: 121 QGSGYGGGNG 129

BLAST of CSPI01G18100 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein)

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-19
Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           + +  SL+L  L++++  +VS +SRVARKDLGLDLGG+G G+G G+GIG GGSGSGAG+G
Sbjct: 4   LNNSSSLILITLILATSVLVS-ESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAG 63

Query: 61  SGS-GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYG 120
           SGS G GSSSSSSSSSSSSSSS G G D+GSEAGSYAGS AGSGSGGR G G G G G G
Sbjct: 64  SGSGGGGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGG 123

Query: 121 SGYGGGHG 128
            G+GGG G
Sbjct: 124 GGHGGGGG 130

BLAST of CSPI01G18100 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-17
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGG-SGSGAGS 60
           M   + L L  L+V S  V+ ++SR+ARKDLG+DLGG+GIG+G G+GIGLGG SGSGAG+
Sbjct: 1   MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60

Query: 61  GSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG 106
           GSGSGSGS SSSSSSSSSSSSSSGSG  +GS AGS+AGSRAGSGSG
Sbjct: 61  GSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|449457853|ref|XP_004146662.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120
           SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

Query: 121 GYGGGHGK 129
           GYGGGHGK
Sbjct: 121 GYGGGHGK 128

BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|698486967|ref|XP_009790177.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana sylvestris])

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-19
Identity = 96/133 (72.18%), Postives = 108/133 (81.20%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGL-GGSGSGAGS 60
           M  +K+     LLV S F+V S+SRVAR DLGLDLGGVG+G+G G+G+GL GGSGSGAG+
Sbjct: 1   MAKVKAFSFLVLLVFSSFIVMSESRVARMDLGLDLGGVGVGLGVGIGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSSSSSSSSSSSSSSSS----GSGSDSGSEAGSYAGSRAGSGSGGRGGEGS-GY 120
           G+GSGSGSSSSSSSSSSSSSSSS    G GS++GS AGSYAGSRAGSGSG RGG G  GY
Sbjct: 61  GAGSGSGSSSSSSSSSSSSSSSSGGGGGGGSEAGSSAGSYAGSRAGSGSGNRGGSGGRGY 120

Query: 121 GGGYGSGYGGGHG 128
           GGGYG GYGGG G
Sbjct: 121 GGGYGGGYGGGDG 133

BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|970041899|ref|XP_015082339.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Solanum pennellii])

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           M  +K+  L  LLV S F+V S+SRVAR DLGL+LGG+G+GVG G+G+G GGSGSGAG+G
Sbjct: 1   MAKVKAFSLLVLLVFSSFIVFSESRVARMDLGLNLGGIGLGVGIGLGLG-GGSGSGAGAG 60

Query: 61  SGSGSGSSSSSSSSSSSSSSSS----GSGSDSGSEAGSYAGSRAGSGSGGRGG-EGSGYG 120
           +GSGSGSSSSSSSSSSSSSSSS    G GS++GS AGSYAGSRAGSGSG RGG  GSGYG
Sbjct: 61  AGSGSGSSSSSSSSSSSSSSSSGGGGGGGSEAGSSAGSYAGSRAGSGSGNRGGSSGSGYG 120

Query: 121 GGYGSGYGGGHG 128
           GG GSGYGGG+G
Sbjct: 121 GGQGSGYGGGNG 131

BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|743941324|ref|XP_011015149.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Populus euphratica])

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 94/131 (71.76%), Postives = 108/131 (82.44%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
           M   +SL L ALLV  +  + S+SRVARKDLG+DLGGVG+G+GAGVG+GLGGSGSG+G+G
Sbjct: 1   MAPYRSLALIALLVI-MSAIESESRVARKDLGVDLGGVGVGLGAGVGVGLGGSGSGSGAG 60

Query: 61  SGSGSGSSSSSSSSSSS---SSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGG 120
           SGSGSGSSS SSSSSSS   SSSSS  GSD+GSEAGSYAGSRAGSGSGGR G G+G G G
Sbjct: 61  SGSGSGSSSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGAGSGSG 120

Query: 121 YGSGYGGGHGK 129
           +G GYG G G+
Sbjct: 121 HGEGYGEGSGR 130

BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|697114881|ref|XP_009611361.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana tomentosiformis])

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 95/132 (71.97%), Postives = 107/132 (81.06%), Query Frame = 1

Query: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGL-GGSGSGAGS 60
           M  +K+      LV S FVV S+SRVAR DLGLDLGGVG+G+G G+G+GL GGSGSGAG+
Sbjct: 1   MAKVKAFSFLVFLVFSNFVVMSESRVARMDLGLDLGGVGVGLGVGIGLGLGGGSGSGAGA 60

Query: 61  GSGSGSGSSSSSSSSSSSSSSSS---GSGSDSGSEAGSYAGSRAGSGSGGRGGEGS-GYG 120
           GSGSGSGSSSSSSSSSSSSSSS+   G GS++GS AGSYAGSRAGSGSG RGG G  GYG
Sbjct: 61  GSGSGSGSSSSSSSSSSSSSSSTGGGGGGSEAGSSAGSYAGSRAGSGSGNRGGSGGRGYG 120

Query: 121 GGYGSGYGGGHG 128
           GGYG G+GGG G
Sbjct: 121 GGYGGGHGGGDG 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWP0_CUCSA2.7e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277980 PE=4 SV=1[more]
U5FI04_POPTR3.5e-1871.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10920g PE=4 SV=1[more]
K4CB94_SOLLC7.7e-1872.31Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
F6HS59_VITVI1.3e-1773.44Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=... [more]
M1ASE2_SOLTU1.3e-1771.54Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011230 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G30460.18.1e-1968.75 glycine-rich protein[more]
AT4G30450.11.5e-1771.70 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|449457853|ref|XP_004146662.1|3.9e-39100.00PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus][more]
gi|698486967|ref|XP_009790177.1|3.4e-1972.18PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana sylve... [more]
gi|970041899|ref|XP_015082339.1|2.2e-1872.73PREDICTED: glycine-rich cell wall structural protein 2-like [Solanum pennellii][more]
gi|743941324|ref|XP_011015149.1|2.2e-1871.76PREDICTED: glycine-rich cell wall structural protein 2-like [Populus euphratica][more]
gi|697114881|ref|XP_009611361.1|2.9e-1871.97PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana tomen... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G18100.1CSPI01G18100.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38934FAMILY NOT NAMEDcoord: 1..127
score: 2.8

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G18100CsaV3_1G029320Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None