CSPI01G18100 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTTAACACAATATATATATACACTCTTTTAATTTCCTCATTCTCTTAATTAAACCTCTTTCATTAATAACAATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCGGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGTGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCAGGTTATGGAGGTGGGCATGGAAAATAAGATATTATTTTCAATTAACAAGGTGATTATTAAAAGATATATATAATTATGGTAATTATGGTTACTATGTAATGAATTAGTATCTACAATATAGAATGATCAATAAGATTTTCTACAATGTATCATATTTACATTCCAGAAATTAATGGAACCATATTTGTGATATATAAACTCTATATATACACGAGTGGTAAAGACATTTGTCATCTCCATCTCATATGTTTG ATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCGGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGTGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCAGGTTATGGAGGTGGGCATGGAAAATAA ATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTCTTCTTGTTTCCTCTCTCTTCGTTGTGTCCTCCCAAAGTCGTGTGGCTAGGAAAGATTTGGGCCTTGACCTAGGTGGGGTGGGCATTGGGGTTGGAGCTGGAGTTGGCATTGGACTTGGTGGGAGTGGTTCGGGCGCAGGATCTGGATCTGGCTCGGGCTCTGGATCGAGTTCAAGTTCTAGTTCTAGCTCTAGCTCTAGCTCTTCTTCTTCTGGGTCAGGTTCCGACTCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGTGGAGGTGAAGGGTCAGGTTATGGTGGAGGATATGGATCAGGTTATGGAGGTGGGCATGGAAAATAA
BLAST of CSPI01G18100 vs. TrEMBL
Match: A0A0A0LWP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277980 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 2.7e-39 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
BLAST of CSPI01G18100 vs. TrEMBL
Match: U5FI04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10920g PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18 Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = 1
BLAST of CSPI01G18100 vs. TrEMBL
Match: K4CB94_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18 Identity = 94/130 (72.31%), Postives = 108/130 (83.08%), Query Frame = 1
BLAST of CSPI01G18100 vs. TrEMBL
Match: F6HS59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17 Identity = 94/128 (73.44%), Postives = 104/128 (81.25%), Query Frame = 1
BLAST of CSPI01G18100 vs. TrEMBL
Match: M1ASE2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011230 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17 Identity = 93/130 (71.54%), Postives = 108/130 (83.08%), Query Frame = 1
BLAST of CSPI01G18100 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein) HSP 1 Score: 90.5 bits (223), Expect = 8.1e-19 Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 1
BLAST of CSPI01G18100 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein) HSP 1 Score: 86.3 bits (212), Expect = 1.5e-17 Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 1
BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|449457853|ref|XP_004146662.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]) HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|698486967|ref|XP_009790177.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana sylvestris]) HSP 1 Score: 103.2 bits (256), Expect = 3.4e-19 Identity = 96/133 (72.18%), Postives = 108/133 (81.20%), Query Frame = 1
BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|970041899|ref|XP_015082339.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Solanum pennellii]) HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18 Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 1
BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|743941324|ref|XP_011015149.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Populus euphratica]) HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18 Identity = 94/131 (71.76%), Postives = 108/131 (82.44%), Query Frame = 1
BLAST of CSPI01G18100 vs. NCBI nr
Match: gi|697114881|ref|XP_009611361.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Nicotiana tomentosiformis]) HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18 Identity = 95/132 (71.97%), Postives = 107/132 (81.06%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |