CsaV3_1G023090 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G023090
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ATP-dependent zinc metalloprotease FtsH
Location	chr1 : 13438022 .. 13438929 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTTCGTGCATTGTTTATGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATACTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTAACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGGTAAGAATATACCATTTATCCTTAACCTGGTTTTATTCTCATTTAGTATTTCCACTCTCCTTTCCTTAGAACTCAAGGACACTATTGTACAACCTATAAAATAAAAACTGTTCAAGAAAGGTTATTACTCATCTTAGAGTGATGGTCTACTTTTGCTTATAACCATAATCACAAGTGATCTCTTGATGAGTTGTATAAATTTGGTGAGGACATGGGTTAATGTAACACATTATCTTTGCCAAAACCTGATGGGCTCGTCACTACAAGGGAATTAGAGAAGTATTAGTTATTGACAAATACTTCATAGAAACTCATTTGCTAATCCTTCAATATATTCTATTGAACAGAATTATGGTTGGTCTTCCATTAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAAGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGGTGTGTTCTCTAATATGTCTTATGATACCACATGAGTTATTTGCCTAGTTCCATTGATCAGCTAATGACCTTTACCTCTGGCAACAGAACTTATGTGTGACTGCAGCTTATCGCCCTGTTCGGGAGCTCTTGTAA

mRNA sequence

ATGTCTACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTTCGTGCATTGTTTATGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATACTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTAACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGAATTATGGTTGGTCTTCCATTAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAAGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTATGTGTGACTGCAGCTTATCGCCCTGTTCGGGAGCTCTTGTAA

Coding sequence (CDS)

ATGTCTACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTTCGTGCATTGTTTATGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATACTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTAACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGAATTATGGTTGGTCTTCCATTAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAAGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTATGTGTGACTGCAGCTTATCGCCCTGTTCGGGAGCTCTTGTAA

Protein sequence

MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL

Homology

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BLAST of CsaV3_1G023090 vs. NCBI nr
Match: KGN62185.1 (hypothetical protein Csa_2G317420 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 5.8e-81
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 240 MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 299

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK
Sbjct: 300 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 359

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 360 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 396

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BLAST of CsaV3_1G023090 vs. NCBI nr
Match: XP_011650169.1 (PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 5.8e-81
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 245 MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 304

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK
Sbjct: 305 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 364

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 365 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 401

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BLAST of CsaV3_1G023090 vs. NCBI nr
Match: XP_008437548.1 (PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 1.4e-79
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 588 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 647

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRELILRTLLSKEK
Sbjct: 648 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEK 707

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 708 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

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BLAST of CsaV3_1G023090 vs. NCBI nr
Match: XP_004145904.2 (PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus] >KGN49910.1 hypothetical protein Csa_5G139870 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 1.4e-79
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 588 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 647

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRELILRTLLSKEK
Sbjct: 648 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEK 707

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 708 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

[Close]

BLAST of CsaV3_1G023090 vs. NCBI nr
Match: XP_011654642.1 (PREDICTED: uncharacterized protein LOC101216426 isoform X2 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 1.4e-79
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 588 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 647

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRELILRTLLSKEK
Sbjct: 648 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEK 707

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 708 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

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BLAST of CsaV3_1G023090 vs. TAIR10
Match: AT5G52882.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 281.2 bits (718), Expect = 4.0e-76
Identity = 139/157 (88.54%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 584 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 643

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           +HWDGL+T+  ERILVLAATNRPFDLDEAIIRRFERRIMVGLP +ESRE ILRTLLSKEK
Sbjct: 644 THWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSIESREKILRTLLSKEK 703

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
            E+LDF EL  +TEGYSGSDLKNLC+TAAYRPVREL+
Sbjct: 704 TENLDFHELGQITEGYSGSDLKNLCITAAYRPVRELI 740

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BLAST of CsaV3_1G023090 vs. TAIR10
Match: AT4G28000.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 278.1 bits (710), Expect = 3.4e-75
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 585 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 644

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           +HWDGL++   +RILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRE ILRTLLSKEK
Sbjct: 645 THWDGLMSNAGDRILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREKILRTLLSKEK 704

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
            E+LDF+ELA MT+GYSGSDLKN C TAAYRPVREL+
Sbjct: 705 TENLDFQELAQMTDGYSGSDLKNFCTTAAYRPVRELI 741

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BLAST of CsaV3_1G023090 vs. TAIR10
Match: AT1G64110.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 276.9 bits (707), Expect = 7.5e-75
Identity = 139/158 (87.97%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LA+KVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 588 MSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 647

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGL+T+  ERILVLAATNRPFDLDEAIIRRFERRIMVGLP VE+RE ILRTLL+KEK
Sbjct: 648 SHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPAVENREKILRTLLAKEK 707

Query: 121 A-EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
             E+LD+KELA MTEGY+GSDLKNLC TAAYRPVREL+
Sbjct: 708 VDENLDYKELAMMTEGYTGSDLKNLCTTAAYRPVRELI 745

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BLAST of CsaV3_1G023090 vs. TAIR10
Match: AT4G24860.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-58
Identity = 108/158 (68.35%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1    MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
            MS+ITSKWFGE EK V+A+F LA+K+SP++IFVDEVDS+LG+R    EHEA RKIKNEFM
Sbjct: 888  MSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGRREHPREHEASRKIKNEFM 947

Query: 61   SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
             HWDGL T+  ER+LVLAATNRPFDLDEA+IRR  RR+MVGLP   +R  IL+ +L+KE 
Sbjct: 948  MHWDGLTTQERERVLVLAATNRPFDLDEAVIRRLPRRLMVGLPDTSNRAFILKVILAKED 1007

Query: 121  -AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
             + DLD  E+A+MT GYSGSDLKNLCVTAA+RP++E+L
Sbjct: 1008 LSPDLDIGEIASMTNGYSGSDLKNLCVTAAHRPIKEIL 1045

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BLAST of CsaV3_1G023090 vs. TAIR10
Match: AT1G02890.1 (AAA-type ATPase family protein)

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-57
Identity = 106/158 (67.09%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1    MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
            MS+ITSKWFGE EK V+A+F LA+K++P++IFVDEVDS+LG+R   GEHEAMRK+KNEFM
Sbjct: 1012 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1071

Query: 61   SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
             +WDGL T++ ER+LVLAATNRPFDLDEA+IRR  RR+MV LP   +R  IL  +L+KE+
Sbjct: 1072 INWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEE 1131

Query: 121  -AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
             AED+D + +A MT+GYSGSDLKNLCVTAA+ P+RE+L
Sbjct: 1132 MAEDVDLEAIANMTDGYSGSDLKNLCVTAAHLPIREIL 1169

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BLAST of CsaV3_1G023090 vs. Swiss-Prot
Match: sp|Q6NW58|SPAST_DANRE (Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-38
Identity = 81/157 (51.59%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 2   STITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFMS 61
           +T+TSK+ GE EK VRALF +A ++ P+IIF+DE+DS+L +R R GEH+A R++K EF+ 
Sbjct: 362 ATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCER-REGEHDASRRLKTEFLI 421

Query: 62  HWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK- 121
            +DG+ +  DER+LV+ ATNRP +LDEA++RRF +RI V LP  E+R  +L+ LLSK + 
Sbjct: 422 EFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRN 481

Query: 122 -AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 157
                +  +LA +T+GYSGSDL +L   AA  P+REL
Sbjct: 482 PLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIREL 517

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BLAST of CsaV3_1G023090 vs. Swiss-Prot
Match: sp|Q7QBW0|SPAST_ANOGA (Spastin OS=Anopheles gambiae OX=7165 GN=spas PE=3 SV=6)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-37
Identity = 83/158 (52.53%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 2   STITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFMS 61
           +T+TSK+ G+ EK VRALF +A ++ P+IIF+DEVDS+L +R+   EHEA R++K EF+ 
Sbjct: 619 ATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSS-NEHEATRRLKTEFLV 678

Query: 62  HWDGLLTRND-ERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 121
            +DGL   ++ +RI+V+AATNRP +LDEA +RRF +R+ V LP  ++REL+LR LL K+ 
Sbjct: 679 QFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQG 738

Query: 122 A--EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 157
           +   D D   LA +TEGYSGSDL  L   AA  P+REL
Sbjct: 739 SPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIREL 775

[Close]

BLAST of CsaV3_1G023090 vs. Swiss-Prot
Match: sp|A2VDN5|SPAST_BOVIN (Spastin OS=Bos taurus OX=9913 GN=SPAST PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-37
Identity = 80/157 (50.96%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 2   STITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFMS 61
           +++TSK+ GE EK VRALF +A ++ P+IIF+DEVDS+L +R R GEH+A R++K EF+ 
Sbjct: 407 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCER-REGEHDASRRLKTEFLI 466

Query: 62  HWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEKA 121
            +DG+ +  D+R+LV+ ATNRP +LDEA++RRF +R+ V LP  E+R L+L+ LL K+ +
Sbjct: 467 EFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGS 526

Query: 122 --EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 157
                +  +LA MT GYSGSDL  L   AA  P+REL
Sbjct: 527 PLTQKELAQLARMTNGYSGSDLTALAKDAALGPIREL 562

[Close]

BLAST of CsaV3_1G023090 vs. Swiss-Prot
Match: sp|Q9UBP0|SPAST_HUMAN (Spastin OS=Homo sapiens OX=9606 GN=SPAST PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-37
Identity = 80/157 (50.96%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 2   STITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFMS 61
           +++TSK+ GE EK VRALF +A ++ P+IIF+DEVDS+L +R R GEH+A R++K EF+ 
Sbjct: 409 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCER-REGEHDASRRLKTEFLI 468

Query: 62  HWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEKA 121
            +DG+ +  D+R+LV+ ATNRP +LDEA++RRF +R+ V LP  E+R L+L+ LL K+ +
Sbjct: 469 EFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS 528

Query: 122 --EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 157
                +  +LA MT+GYSGSDL  L   AA  P+REL
Sbjct: 529 PLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 564

[Close]

BLAST of CsaV3_1G023090 vs. Swiss-Prot
Match: sp|Q9QYY8|SPAST_MOUSE (Spastin OS=Mus musculus OX=10090 GN=Spast PE=1 SV=3)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-37
Identity = 80/157 (50.96%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 2   STITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFMS 61
           +++TSK+ GE EK VRALF +A ++ P+IIF+DEVDS+L +R R GEH+A R++K EF+ 
Sbjct: 407 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCER-REGEHDASRRLKTEFLI 466

Query: 62  HWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEKA 121
            +DG+ +  D+R+LV+ ATNRP +LDEA++RRF +R+ V LP  E+R L+L+ LL K+ +
Sbjct: 467 EFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS 526

Query: 122 --EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 157
                +  +LA MT+GYSGSDL  L   AA  P+REL
Sbjct: 527 PLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 562

[Close]

BLAST of CsaV3_1G023090 vs. TrEMBL
Match: tr|A0A0A0LJV7|A0A0A0LJV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G317420 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.8e-81
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 240 MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 299

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK
Sbjct: 300 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 359

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 360 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 396

[Close]

BLAST of CsaV3_1G023090 vs. TrEMBL
Match: tr|A0A1S3AUX0|A0A1S3AUX0_CUCME (uncharacterized protein LOC103482929 OS=Cucumis melo OX=3656 GN=LOC103482929 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 9.4e-80
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 588 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 647

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRELILRTLLSKEK
Sbjct: 648 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEK 707

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 708 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

[Close]

BLAST of CsaV3_1G023090 vs. TrEMBL
Match: tr|A0A0A0KJL1|A0A0A0KJL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139870 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 9.4e-80
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 588 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 647

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRELILRTLLSKEK
Sbjct: 648 SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEK 707

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 708 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

[Close]

BLAST of CsaV3_1G023090 vs. TrEMBL
Match: tr|A0A068UA01|A0A068UA01_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00020063001 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.8e-76
Identity = 146/157 (92.99%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 595 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 654

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           SHWDGLLT+  ERILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRE+ILRTLLSKEK
Sbjct: 655 SHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILRTLLSKEK 714

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
            EDLDFKELA MTEGYSGSDLKNLC+TAAYRPVREL+
Sbjct: 715 VEDLDFKELAAMTEGYSGSDLKNLCITAAYRPVRELI 751

[Close]

BLAST of CsaV3_1G023090 vs. TrEMBL
Match: tr|A5ASR5|A5ASR5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_026769 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.8e-76
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQRTRVGEHEAMRKIKNEFM 60
           MSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQRTRVGEHEAMRKIKNEFM
Sbjct: 579 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 638

Query: 61  SHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPLVESRELILRTLLSKEK 120
           +HWDGLLT+  ERILVLAATNRPFDLDEAIIRRFERRIMVGLP VESRE+IL+TLL+KEK
Sbjct: 639 THWDGLLTKAGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILKTLLAKEK 698

Query: 121 AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 158
           AEDLDFKELATMTEGY+GSDLKNLCVTAAYRPVRELL
Sbjct: 699 AEDLDFKELATMTEGYTGSDLKNLCVTAAYRPVRELL 735

The following BLAST results are available for this feature:

BLAST of CsaV3_1G023090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62185.1	5.8e-81	99.36	hypothetical protein Csa_2G317420 [Cucumis sativus]	[more]
XP_011650169.1	5.8e-81	99.36	PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-...	[more]
XP_008437548.1	1.4e-79	98.09	PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo]	[more]
XP_004145904.2	1.4e-79	98.09	PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus] ...	[more]
XP_011654642.1	1.4e-79	98.09	PREDICTED: uncharacterized protein LOC101216426 isoform X2 [Cucumis sativus]	[more]

BLAST of CsaV3_1G023090 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52882.1	4.0e-76	88.54	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G28000.1	3.4e-75	87.90	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G64110.2	7.5e-75	87.97	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G24860.1	1.7e-58	68.35	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G02890.1	1.1e-57	67.09	AAA-type ATPase family protein	[more]

BLAST of CsaV3_1G023090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NW58\|SPAST_DANRE	1.4e-38	51.59	Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2	[more]
sp\|Q7QBW0\|SPAST_ANOGA	2.0e-37	52.53	Spastin OS=Anopheles gambiae OX=7165 GN=spas PE=3 SV=6	[more]
sp\|A2VDN5\|SPAST_BOVIN	2.7e-37	50.96	Spastin OS=Bos taurus OX=9913 GN=SPAST PE=1 SV=1	[more]
sp\|Q9UBP0\|SPAST_HUMAN	2.7e-37	50.96	Spastin OS=Homo sapiens OX=9606 GN=SPAST PE=1 SV=1	[more]
sp\|Q9QYY8\|SPAST_MOUSE	2.7e-37	50.96	Spastin OS=Mus musculus OX=10090 GN=Spast PE=1 SV=3	[more]

BLAST of CsaV3_1G023090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJV7\|A0A0A0LJV7_CUCSA	3.8e-81	99.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G317420 PE=3 SV=1	[more]
tr\|A0A1S3AUX0\|A0A1S3AUX0_CUCME	9.4e-80	98.09	uncharacterized protein LOC103482929 OS=Cucumis melo OX=3656 GN=LOC103482929 PE=...	[more]
tr\|A0A0A0KJL1\|A0A0A0KJL1_CUCSA	9.4e-80	98.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139870 PE=4 SV=1	[more]
tr\|A0A068UA01\|A0A068UA01_COFCA	4.8e-76	92.99	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00020063001 PE=4 ...	[more]
tr\|A5ASR5\|A5ASR5_VITVI	4.8e-76	92.99	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_026769 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR003960	ATPase_AAA_CS
IPR003959	ATPase_AAA_core

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008568	microtubule-severing ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G023090.1	CsaV3_1G023090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 2..101 e-value: 8.2E-22 score: 77.9
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 2..102 e-value: 3.5E-56 score: 192.6
None	No IPR available	GENE3D	G3DSA:1.10.8.60		coord: 103..156 e-value: 3.5E-56 score: 192.6
None	No IPR available	PANTHER	PTHR23074	AAA ATPASE	coord: 1..157
None	No IPR available	PANTHER	PTHR23074:SF98	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	coord: 1..157
None	No IPR available	CDD	cd00009	AAA	coord: 1..102 e-value: 1.16455E-7 score: 45.9851
IPR003960	ATPase, AAA-type, conserved site	PROSITE	PS00674	AAA	coord: 74..93
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..148

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G023090	CSPI02G16020	Wild cucumber (PI 183967)	cpicucB069
CsaV3_1G023090	Cucsa.381290	Cucumber (Gy14) v1	cgycucB578
CsaV3_1G023090	CsGy2G016610	Cucumber (Gy14) v2	cgybcucB055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G023090	Cucumber (Gy14) v2	cgybcucB001