CSPI02G16020 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G16020
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Spastin
Location	Chr2 : 15498157 .. 15499174 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTAAACCTTGTAGAGGCATCCTACTTTTCGGTCCTCCTGGAACGGATAAAACAATGTTGGCAAAGGCCATTGCTAACGAAGTCGGAGCAAGTTTCATTAATGTTTCAATGTCTACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTTCGTGCATTGTTTATGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATACTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTAACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGGTAAGAATATACCATTTATCCTTAACCTGGTTTTATTCTCATTTAGTATTTCCACTCTCCTTTCCTTAGAACTCAAGGACACTATTGTACAACCTATAAAATAAAAACTGTTCAAGAAAGGTTATTACTCATCTTAGAGTGATGGTCTACTTTTGCTTATAACCATAATCACAAGTGATCTCTTGATGAGTTGTATAAATTTGGTGAGGACATGGGTTAATGTAACACATTATCTTTGCCAAAACCTGATGGGCTCGTCACTACAAGGGAATTAGAGAAGTATTAGTTATTGACAAATACTTCATAGAAACTCATTTGCTAATCCTTCAATATATTCTATTGAACAGAATTATGGTTGGTCTTCCATTAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAAGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGGTGTGTTCTCTAATATGTCTTATGATACCACATGAGTTATTTGCCTAGTTCCATTGATCAGCTAATGACCTTTACCTCTGGCAACAGAACTTATGTGTGACTGCAGCTTATCGGCCTGTTCGGGAGCTCTTGTAA

mRNA sequence

ATGTTGGCAAAGGCCATTGCTAACGAAGTCGGAGCAAGTTTCATTAATGTTTCAATGTCTACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTTCGTGCATTGTTTATGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATACTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTAACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGAATTATGGTTGGTCTTCCATTAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAAGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTATGTGTGACTGCAGCTTATCGGCCTGTTCGGGAGCTCTTGTAA

Coding sequence (CDS)

ATGTTGGCAAAGGCCATTGCTAACGAAGTCGGAGCAAGTTTCATTAATGTTTCAATGTCTACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTTCGTGCATTGTTTATGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATACTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTAACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGAATTATGGTTGGTCTTCCATTAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAAGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTATGTGTGACTGCAGCTTATCGGCCTGTTCGGGAGCTCTTGTAA

Homology

[Close]

BLAST of CSPI02G16020 vs. Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 3.2e-44
Identity = 92/176 (52.27%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKA+A E  A+F N+S +T+TSK+ GE EK VRALF +A ++ P+IIF+DE+DS+L +
Sbjct: 343 MLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCE 402

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           R R GEH+A R++K EF+  +DG+ +  DER+LV+ ATNRP +LDEA++RRF +RI V L
Sbjct: 403 R-REGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVAL 462

Query: 121 PLVESRELILRTLLSKEK--AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 175
           P  E+R  +L+ LLSK +      +  +LA +T+GYSGSDL +L   AA  P+REL
Sbjct: 463 PTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIREL 517

[Close]

BLAST of CSPI02G16020 vs. Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43
Identity = 91/176 (51.70%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKA+A E  A+F N+S +++TSK+ GE EK VRALF +A ++ P+IIF+DEVDS+L +
Sbjct: 355 MLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCE 414

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           R R GEH+A R++K EF+  +DG+ +  D+R+LV+ ATNRP +LDEA++RRF +R+ V L
Sbjct: 415 R-REGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSL 474

Query: 121 PLVESRELILRTLLSKEKA--EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 175
           P  E+R L+L+ LL K+ +     +  +LA MT+GYSGSDL  L   AA  P+REL
Sbjct: 475 PNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 529

[Close]

BLAST of CSPI02G16020 vs. Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43
Identity = 91/176 (51.70%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKA+A E  A+F N+S +++TSK+ GE EK VRALF +A ++ P+IIF+DEVDS+L +
Sbjct: 390 MLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCE 449

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           R R GEH+A R++K EF+  +DG+ +  D+R+LV+ ATNRP +LDEA++RRF +R+ V L
Sbjct: 450 R-REGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSL 509

Query: 121 PLVESRELILRTLLSKEKA--EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 175
           P  E+R L+L+ LL K+ +     +  +LA MT+GYSGSDL  L   AA  P+REL
Sbjct: 510 PNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 564

[Close]

BLAST of CSPI02G16020 vs. Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=1 SV=3)

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43
Identity = 91/176 (51.70%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKA+A E  A+F N+S +++TSK+ GE EK VRALF +A ++ P+IIF+DEVDS+L +
Sbjct: 388 MLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCE 447

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           R R GEH+A R++K EF+  +DG+ +  D+R+LV+ ATNRP +LDEA++RRF +R+ V L
Sbjct: 448 R-REGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSL 507

Query: 121 PLVESRELILRTLLSKEKA--EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 175
           P  E+R L+L+ LL K+ +     +  +LA MT+GYSGSDL  L   AA  P+REL
Sbjct: 508 PNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 562

[Close]

BLAST of CSPI02G16020 vs. Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43
Identity = 91/176 (51.70%), Postives = 128/176 (72.73%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKA+A E  A+F N+S +++TSK+ GE EK VRALF +A ++ P+IIF+DEVDS+L +
Sbjct: 388 MLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCE 447

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           R R GEH+A R++K EF+  +DG+ +  D+R+LV+ ATNRP +LDEA++RRF +R+ V L
Sbjct: 448 R-REGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSL 507

Query: 121 PLVESRELILRTLLSKEKA--EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVREL 175
           P  E+R L+L+ LL K+ +     +  +LA MT GYSGSDL  L   AA  P+REL
Sbjct: 508 PNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIREL 562

[Close]

BLAST of CSPI02G16020 vs. TrEMBL
Match: A0A0A0LJV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G317420 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.6e-90
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDS+LGQ
Sbjct: 222 MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSMLGQ 281

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 282 RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 341

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 342 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 396

[Close]

BLAST of CSPI02G16020 vs. TrEMBL
Match: A0A0A0KJL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139870 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-88
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 570 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 629

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 630 RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 689

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 690 PSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

[Close]

BLAST of CSPI02G16020 vs. TrEMBL
Match: A5ASR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026769 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 5.9e-85
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 561 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 620

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFM+HWDGLLT+  ERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 621 RTRVGEHEAMRKIKNEFMTHWDGLLTKAGERILVLAATNRPFDLDEAIIRRFERRIMVGL 680

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRE+IL+TLL+KEKAEDLDFKELATMTEGY+GSDLKNLCVTAAYRPVRELL
Sbjct: 681 PSVESREMILKTLLAKEKAEDLDFKELATMTEGYTGSDLKNLCVTAAYRPVRELL 735

[Close]

BLAST of CSPI02G16020 vs. TrEMBL
Match: E0CUQ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01850 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 5.9e-85
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 573 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 632

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFM+HWDGLLT+  ERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 633 RTRVGEHEAMRKIKNEFMTHWDGLLTKAGERILVLAATNRPFDLDEAIIRRFERRIMVGL 692

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRE+IL+TLL+KEKAEDLDFKELATMTEGY+GSDLKNLCVTAAYRPVRELL
Sbjct: 693 PSVESREMILKTLLAKEKAEDLDFKELATMTEGYTGSDLKNLCVTAAYRPVRELL 747

[Close]

BLAST of CSPI02G16020 vs. TrEMBL
Match: A0A068UA01_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020063001 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 5.9e-85
Identity = 163/175 (93.14%), Postives = 168/175 (96.00%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 577 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 636

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLT+  ERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 637 RTRVGEHEAMRKIKNEFMSHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGL 696

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRE+ILRTLLSKEK EDLDFKELA MTEGYSGSDLKNLC+TAAYRPVREL+
Sbjct: 697 PSVESREMILRTLLSKEKVEDLDFKELAAMTEGYSGSDLKNLCITAAYRPVRELI 751

[Close]

BLAST of CSPI02G16020 vs. TAIR10
Match: AT5G52882.1 (AT5G52882.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 310.1 bits (793), Expect = 8.9e-85
Identity = 156/175 (89.14%), Postives = 165/175 (94.29%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 566 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 625

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFM+HWDGL+T+  ERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 626 RTRVGEHEAMRKIKNEFMTHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGL 685

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P +ESRE ILRTLLSKEK E+LDF EL  +TEGYSGSDLKNLC+TAAYRPVREL+
Sbjct: 686 PSIESREKILRTLLSKEKTENLDFHELGQITEGYSGSDLKNLCITAAYRPVRELI 740

[Close]

BLAST of CSPI02G16020 vs. TAIR10
Match: AT4G28000.1 (AT4G28000.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-83
Identity = 154/175 (88.00%), Postives = 164/175 (93.71%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           M+AKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 567 MMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 626

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFM+HWDGL++   +RILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 627 RTRVGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAATNRPFDLDEAIIRRFERRIMVGL 686

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRE ILRTLLSKEK E+LDF+ELA MT+GYSGSDLKN C TAAYRPVREL+
Sbjct: 687 PSVESREKILRTLLSKEKTENLDFQELAQMTDGYSGSDLKNFCTTAAYRPVRELI 741

[Close]

BLAST of CSPI02G16020 vs. TAIR10
Match: AT1G64110.2 (AT1G64110.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 303.5 bits (776), Expect = 8.3e-83
Identity = 155/176 (88.07%), Postives = 165/176 (93.75%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIA E GASFINVSMSTITSKWFGEDEKNVRALF LA+KVSPTIIFVDEVDS+LGQ
Sbjct: 570 MLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQ 629

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGL+T+  ERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 630 RTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGL 689

Query: 121 PLVESRELILRTLLSKEKA-EDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VE+RE ILRTLL+KEK  E+LD+KELA MTEGY+GSDLKNLC TAAYRPVREL+
Sbjct: 690 PAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGSDLKNLCTTAAYRPVRELI 745

[Close]

BLAST of CSPI02G16020 vs. TAIR10
Match: AT4G24860.1 (AT4G24860.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-65
Identity = 120/176 (68.18%), Postives = 147/176 (83.52%), Query Frame = 1


Query: 1    MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
            MLAKA+A E  A+FIN+SMS+ITSKWFGE EK V+A+F LA+K+SP++IFVDEVDS+LG+
Sbjct: 870  MLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGR 929

Query: 61   RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
            R    EHEA RKIKNEFM HWDGL T+  ER+LVLAATNRPFDLDEA+IRR  RR+MVGL
Sbjct: 930  REHPREHEASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFDLDEAVIRRLPRRLMVGL 989

Query: 121  PLVESRELILRTLLSKEK-AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
            P   +R  IL+ +L+KE  + DLD  E+A+MT GYSGSDLKNLCVTAA+RP++E+L
Sbjct: 990  PDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGSDLKNLCVTAAHRPIKEIL 1045

[Close]

BLAST of CSPI02G16020 vs. TAIR10
Match: AT1G02890.1 (AT1G02890.1 AAA-type ATPase family protein)

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-65
Identity = 119/176 (67.61%), Postives = 150/176 (85.23%), Query Frame = 1


Query: 1    MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
            MLAKA+A E GA+FIN+SMS+ITSKWFGE EK V+A+F LA+K++P++IFVDEVDS+LG+
Sbjct: 994  MLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1053

Query: 61   RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
            R   GEHEAMRK+KNEFM +WDGL T++ ER+LVLAATNRPFDLDEA+IRR  RR+MV L
Sbjct: 1054 RENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNL 1113

Query: 121  PLVESRELILRTLLSKEK-AEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
            P   +R  IL  +L+KE+ AED+D + +A MT+GYSGSDLKNLCVTAA+ P+RE+L
Sbjct: 1114 PDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLKNLCVTAAHLPIREIL 1169

[Close]

BLAST of CSPI02G16020 vs. NCBI nr
Match: gi|778674243|ref|XP_011650169.1| (PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 2.3e-90
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDS+LGQ
Sbjct: 227 MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSMLGQ 286

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 287 RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 346

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 347 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 401

[Close]

BLAST of CSPI02G16020 vs. NCBI nr
Match: gi|700207066|gb|KGN62185.1| (hypothetical protein Csa_2G317420 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 2.3e-90
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDS+LGQ
Sbjct: 222 MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSMLGQ 281

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 282 RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 341

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 342 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 396

[Close]

BLAST of CSPI02G16020 vs. NCBI nr
Match: gi|659074334|ref|XP_008437548.1| (PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo])

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-88
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 570 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 629

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 630 RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 689

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 690 PSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

[Close]

BLAST of CSPI02G16020 vs. NCBI nr
Match: gi|778699019|ref|XP_011654642.1| (PREDICTED: uncharacterized protein LOC101216426 isoform X2 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-88
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 570 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 629

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 630 RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 689

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 690 PSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

[Close]

BLAST of CSPI02G16020 vs. NCBI nr
Match: gi|778699015|ref|XP_004145904.2| (PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-88
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 1


Query: 1   MLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFMLAAKVSPTIIFVDEVDSILGQ 60
           MLAKAIANE GASFINVSMSTITSKWFGEDEKNVRALF LAAKVSPTIIFVDEVDS+LGQ
Sbjct: 570 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 629

Query: 61  RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 120
           RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL
Sbjct: 630 RTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGL 689

Query: 121 PLVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 176
           P VESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL
Sbjct: 690 PSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELL 744

The following BLAST results are available for this feature:

BLAST of CSPI02G16020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPAST_DANRE	3.2e-44	52.27	Spastin OS=Danio rerio GN=spast PE=2 SV=2	[more]
SPAST_RAT	6.1e-43	51.70	Spastin OS=Rattus norvegicus GN=Spast PE=1 SV=1	[more]
SPAST_HUMAN	6.1e-43	51.70	Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1	[more]
SPAST_MOUSE	6.1e-43	51.70	Spastin OS=Mus musculus GN=Spast PE=1 SV=3	[more]
SPAST_BOVIN	6.1e-43	51.70	Spastin OS=Bos taurus GN=SPAST PE=1 SV=1	[more]

BLAST of CSPI02G16020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJV7_CUCSA	1.6e-90	99.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G317420 PE=3 SV=1	[more]
A0A0A0KJL1_CUCSA	1.1e-88	97.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139870 PE=4 SV=1	[more]
A5ASR5_VITVI	5.9e-85	93.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026769 PE=4 SV=1	[more]
E0CUQ3_VITVI	5.9e-85	93.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01850 PE=4 SV=...	[more]
A0A068UA01_COFCA	5.9e-85	93.14	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020063001 PE=4 SV=1	[more]

BLAST of CSPI02G16020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52882.1	8.9e-85	89.14	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT4G28000.1	1.3e-83	88.00	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT1G64110.2	8.3e-83	88.07	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT4G24860.1	4.6e-65	68.18	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT1G02890.1	4.6e-65	67.61	AAA-type ATPase family protein	[more]

BLAST of CSPI02G16020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674243\|ref\|XP_011650169.1\|	2.3e-90	99.43	PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-...	[more]
gi\|700207066\|gb\|KGN62185.1\|	2.3e-90	99.43	hypothetical protein Csa_2G317420 [Cucumis sativus]	[more]
gi\|659074334\|ref\|XP_008437548.1\|	1.6e-88	97.71	PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo]	[more]
gi\|778699019\|ref\|XP_011654642.1\|	1.6e-88	97.71	PREDICTED: uncharacterized protein LOC101216426 isoform X2 [Cucumis sativus]	[more]
gi\|778699015\|ref\|XP_004145904.2\|	1.6e-88	97.71	PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003959	ATPase_AAA_core
IPR003960	ATPase_AAA_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008568	microtubule-severing ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G16020.1	CSPI02G16020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 1..119 score: 4.0
IPR003960	ATPase, AAA-type, conserved site	PROSITE	PS00674	AAA	coord: 92..111 scor
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 1..130 score: 7.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..173 score: 1.03
None	No IPR available	GENE3D	G3DSA:1.10.8.60		coord: 131..174 score: 2.8
None	No IPR available	PANTHER	PTHR23074	AAA ATPASE	coord: 1..175 score: 3.7E
None	No IPR available	PANTHER	PTHR23074:SF98	SUBFAMILY NOT NAMED	coord: 1..175 score: 3.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G16020	Csa2G317420	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G16020	CsaV3_1G023090	Cucumber (Chinese Long) v3	cpicucB069
CSPI02G16020	CsGy2G016610	Cucumber (Gy14) v2	cgybcpiB059

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G16020	Silver-seed gourd	carcpiB0718
CSPI02G16020	Cucumber (Gy14) v1	cgycpiB563
CSPI02G16020	Cucurbita maxima (Rimu)	cmacpiB704
CSPI02G16020	Cucurbita moschata (Rifu)	cmocpiB697
CSPI02G16020	Cucurbita pepo (Zucchini)	cpecpiB387