CsaV3_1G018450 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G018450
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 12083219 .. 12083491 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAAGGATACTCAAAAGCAAGAATTAGAAACTCATTTGAAGATGAGTTAAAGGTTCATAAACATGAATCTGTACGAAGACAAGTTTCCAAGAACACCACCATCGGTAATTTTGGGAGGGAGAAGCTCCTCAACCTCGGTCTGAGTATCAGTTTGTTAAAGATAAAGAAAAGATTGATCAAATTTGTCCAACATCAAGGATCCAAGGTGAAAAGTCTTGTCGGTCTCGACCAAATGAAGATTGATCTAAGGAGACATCTAAAGCGTTAG

mRNA sequence

ATGGGGGAAGGATACTCAAAAGCAAGAATTAGAAACTCATTTGAAGATGAGTTAAAGGTTCATAAACATGAATCTGTACGAAGACAAGTTTCCAAGAACACCACCATCGGTAATTTTGGGAGGGAGAAGCTCCTCAACCTCGGTCTGAGTATCAGTTTGTTAAAGATAAAGAAAAGATTGATCAAATTTGTCCAACATCAAGGATCCAAGGTGAAAAGTCTTGTCGGTCTCGACCAAATGAAGATTGATCTAAGGAGACATCTAAAGCGTTAG

Coding sequence (CDS)

ATGGGGGAAGGATACTCAAAAGCAAGAATTAGAAACTCATTTGAAGATGAGTTAAAGGTTCATAAACATGAATCTGTACGAAGACAAGTTTCCAAGAACACCACCATCGGTAATTTTGGGAGGGAGAAGCTCCTCAACCTCGGTCTGAGTATCAGTTTGTTAAAGATAAAGAAAAGATTGATCAAATTTGTCCAACATCAAGGATCCAAGGTGAAAAGTCTTGTCGGTCTCGACCAAATGAAGATTGATCTAAGGAGACATCTAAAGCGTTAG

Protein sequence

MGEGYSKARIRNSFEDELKVHKHESVRRQVSKNTTIGNFGREKLLNLGLSISLLKIKKRLIKFVQHQGSKVKSLVGLDQMKIDLRRHLKR

Homology

[Close]

BLAST of CsaV3_1G018450 vs. NCBI nr
Match: KGN65082.1 (hypothetical protein Csa_1G196245 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MGEGYSKARIRNSFEDELKVHKHESVRRQVSKNTTIGNFGREKLLNLGLSISLLKIKKRL 60
          MGEGYSKARIRNSFEDELKVHKHESVRRQVSKNTTIGNFGREKLLNLGLSISLLKIKKRL
Sbjct: 1  MGEGYSKARIRNSFEDELKVHKHESVRRQVSKNTTIGNFGREKLLNLGLSISLLKIKKRL 60

Query: 61 IKFVQHQGSKVKSLVGLDQMKIDLRRHLKR 91
          IKFVQHQGSKVKSLVGLDQMKIDLRRHLKR
Sbjct: 61 IKFVQHQGSKVKSLVGLDQMKIDLRRHLKR 90

[Close]

BLAST of CsaV3_1G018450 vs. TrEMBL
Match: tr|A0A0A0LW87|A0A0A0LW87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G196245 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MGEGYSKARIRNSFEDELKVHKHESVRRQVSKNTTIGNFGREKLLNLGLSISLLKIKKRL 60
          MGEGYSKARIRNSFEDELKVHKHESVRRQVSKNTTIGNFGREKLLNLGLSISLLKIKKRL
Sbjct: 1  MGEGYSKARIRNSFEDELKVHKHESVRRQVSKNTTIGNFGREKLLNLGLSISLLKIKKRL 60

Query: 61 IKFVQHQGSKVKSLVGLDQMKIDLRRHLKR 91
          IKFVQHQGSKVKSLVGLDQMKIDLRRHLKR
Sbjct: 61 IKFVQHQGSKVKSLVGLDQMKIDLRRHLKR 90

The following BLAST results are available for this feature:

BLAST of CsaV3_1G018450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65082.1	2.2e-40	100.00	hypothetical protein Csa_1G196245 [Cucumis sativus]	[more]

BLAST of CsaV3_1G018450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G018450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G018450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LW87\|A0A0A0LW87_CUCSA	1.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G196245 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G018450.1	CsaV3_1G018450.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G018450	CSPI01G16210	Wild cucumber (PI 183967)	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G018450	Cucurbita pepo (Zucchini)	cpecucB0640
CsaV3_1G018450	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G018450	Melon (DHL92) v3.5.1	cucmeB017
CsaV3_1G018450	Melon (DHL92) v3.6.1	cucmedB014
CsaV3_1G018450	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G018450	Watermelon (97103) v1	cucwmB057
CsaV3_1G018450	Watermelon (97103) v2	cucwmbB008
CsaV3_1G018450	Wax gourd	cucwgoB039
CsaV3_1G018450	Silver-seed gourd	carcucB1083
CsaV3_1G018450	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G018450	Cucurbita maxima (Rimu)	cmacucB0241
CsaV3_1G018450	Cucurbita moschata (Rifu)	cmocucB0228