CsaV3_1G017290 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G017290
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pleiotropic drug resistance protein 3-like
Location	chr1 : 11839032 .. 11842824 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTATAACCCCCAATTTCTCTTCCTCTTCCACGATAAAAATAAACACCAAATCCATAACCCTCTCTTCAAGCGACGGCAAATCCCAAGTTCTCAACCCTCTCCTGCGGCAACCGACGACAACTGATGACAACCAGCGGCAACCCACTACCTCTCCCCTTCTATTTCATCCTACTCGTTCAGAATCTCAGTTCAGAATCTCGGTCTCAAACTTCTTAAAAGAGAAAGAGCTGCGACTGCTGTGCTGGGCGAACTGCCTAAAGGGCGAAGACCTTAATGTTCAGCCTTTTGATTTTGATGAAAGGTACGTAGTGGAAGACTCCGTGGAAGGCTCCGCACGGTTTCGATCTCGAAGAAAAAGGTACGTAGTATTCTTTTCTCTTTGTCGATTATCTATGATTAAATTGTTCTATCTTGTTCCCTTCCATTTTGGGGTTTTCAGTTTATATTACGCTAATGTTTCGGTTGGAATGTCGTCGTTAGATTTCCTTATGGTTAGACACTGGAAGCAATTTGTTTTGATTACCGTGTGAATGTTCTAGTTGTTTTACCTATTTAAACACATCAAATGAAGGAAATGTATTTAAACCGACGATGCAAATCTTGAAGTTGATGTTCTCTCCAATGAAATCAACTGGCTGATTCTTGTTTTGATTAACTAGAATGGACATTGATGTTGAAGATGACAATTACTTCATGGTAGCCCTTTTTTTTGCTCTCATTTTACTTCTTGTTGATGGGTTTCCAGAATTGGTTATGGCTATTCAAAGAGTTGAAGTTTTCTATAAACAAAAACAGTTCTATTTCTACCCAGCCTGGGCCTATCTATGCTATTCCAGCTTAATCAAGATCCCACTTTCCCTCGGCGAATCCTTAGTTTGGACTTCTCTTACTCACTACGTCATTGGCTTCACCCCTCAACCTATCAGGTTAGTTTTCATGAACTCTTTAGTTTTGTAACCATTCTCAAAATGCCATAATTTGGATTAAACGCTTAGAACTTCTTTTCTTTTTTCTTTTTAAATTTTTGGTTATAGGTTATAATTTATTATTCTGTTTGGGGTGCATTTATCAGCATTGTCCCTGTTTAGAATGATAGCTTAGCTTCAATCTTCCAAAGCAATGGTGCTTCCTTTACAGTAGGCAATTTTGTAATATTATTTGCCTTGTTATTTGGTGGCTTCATCATCTCACATCATAAGTTTTCTTAATAACTAAGGTCTTTGTTAGATTACGATTTCATTATTTAAAACTACGTACGTTTCATTTCTCCCGCAGTATGATATTAAAGCATCATAGAGAGAGTTTGATTTTCAATTTTTTGAATTATGCAACATCCATGCTAGCTTGGTTGAATTGGGGTTTTTGGGTTTCACCAATAAGTTATGGAGAAATTGGCATTTCTCTTAATGAATTAAATTGTTTATGTGCAGTTTATTACTTACACCACTTGCCAATCGCAGATGGATGGGTAAGAACTCTTTCCTCTCTTGATCATATTGAACTAATATCTGTTGTCTTTTATTTATTGACCATCTTGTTAAACCAAATCCTGACATGATAGGGGCATTTATAAAATTTAGAAAGCCTTTGTAGGTTTCTTGTAATTTGGTTGTAAACACCTTTGTTTCAATCAAACAGTTTTAGTGACAAAGTTGCATTGCATTATGGTTTTATTTATTTCCTTCAGCTAGGGCCTCCCTCTTATTTCCCTTATAAATGACACATTTCATGTGCTTTTTTCTGCCTTGGCATTCATAAGCATCATCTTTCTCTTAAGAATTTGTTTACCCTGAAAACAAAACCAACAAAAAGGTTATAGCAGAAAAATGAACATAGGATTCATGAATTTGTGTTTATAAATCTAGGATGAATTCTCAATAGGTACACAAAAATACTGTAGAAATTGCATTCTTACATCGCCTTCGATGCTTGGAATATGTTTCATCTTTAGTGAAGTCAAAAAGTGTCCATAAGATCTATGGATTGGAACAATATCTTTGTACGTACCACTACAACTTTGATTTCTATTTTCTCCCATGCAGAAGAGAGAGACTCGTTTAGAAATGGTTGGAAACGTTTTTCGAAAAATTTCAATGTGGATTAGCATAATTTAGTACTCTTGATCTGAAATTTACTTCACAATACATGTGCATATATGTCCCAAATAAATAAGTGTTGAGTGTTGTGGAAGTTTTGTAACTTGTTTTATATAATTCTTTTAGATATCATGATTGCACTTGTGGAAATTCTGCATTTTTTGTGACATAGTTTGAGAAATTACATCTTTTTTGACTCATCCCTTATAAAATGTATTATTGCTTCTTCTCTAGGTACCAAGGTATATTCTTCTATGTTATGTTTACCTTCATTTGTAGTTTCTTTAGTTTTATTTTTCTTATGCCATTGCTTTTCTATATGTAGTTTCTTTAGTCTTTGAATTAGAAGTTAAAGTTCTTAGTTTTAATGCTATTCTTATTTTGTTTGTAGATTTCAAGGAGTTGAAGATAACAATTAGTGAAATTTTGATCAGTTTGGAGTTATCCCAAGAGTGTTGTGGTTCTTGGAGGAGGGTGATGACTCTATTTCTTATTATTACATATACTCATGTTTTATGATTAAGAACGATGTTCTATTTTCTGTCTATGTGCTATATGAGACGAGATTTGTGACTAATTAGAAATATATCCACTATTGATTTTTCTATTTTCTGAATAGGTTTGTATCTCGTTTTGTATTCTTTGTAGGATGAACTCATCACTTGGTGATTAGGCTTCAAGTTAATATTGTTGAACAATGTTTAATGACATTAGCTATGAAGTATTTGTATAGTTGGGAAGTCTTGGTAACTATCATGAGAACTTTTCATAGCTTGCTTCTAATATTTCTCTCTTGAAAGCATATTCTCATTTATAAAATTTGATCTCTTGTGTGCTCTTGGGAGTCATTTGTTTATCTAACACGTCAAGAAAGCATACAAGCAAATTCCTTTGAATATGTGTTATGTAACTATCTGTAGGTAAAGTCCTTTTCTCAACTAAACTATAGGTTACTTTATGATGTGAATTGCCTTTAGTTTTTTTTAAAAGTATTATGTGTTGTATTTAAAGTTCTTGCATTTAGAACGGTTATATTTGCTGCCTTGGTTTGATATCAAACTCATACAAACACTTTGAGCTAGGCTGAGAAGCAAAGAAACAAGGTTAACTTTATGATGTGAATTACCTTTAAACATCTTTTTTCTAGTGTATCATTATGATAAATCTATTCGTTTTTTTTTTTTTTTTTTTTTTTTGAGATTTAGAATGATTTTGACCACATGGTTATATTGGTACAATATGTAGTTTATTGAAATAGGACTTGAAGGAGATGCCAATTCTGACGGTGAAGAAGATGAAATGGAGGACACTGATGATGTAGAAGTGGAACATCTACACATTTCAGATTACCAAGGTTTTGCACTAATATTCGATTGATTTACTATAGCGATGAAGCTACCAAGCAAGTGATTGATGTTTGATTCTGTTGAAATTTTTTGTCCTAAAACTCATAGTTTGTAAATCATATTCTGTTCAATAAAGTTGTTATTGAGAAATTAAATATTATAATCTTAAATCCAATAAATCAAGTTTTAAGGCTATTTTTGAATAAACTGTGTAAACATAAAGGTGGATGAAGTTTGAGTATATAGCCTAAATAGTCTATAGTATATGAAATAAAGATTGGGCGCCTTATTTAGAGAAATTATGGATGCGGCCCACTTTGTAGTACAAACGAGGTGATCCTAATCG

mRNA sequence

ATGGCTATTCAAAGAGTTGAAGTTTTCTATAAACAAAAACAGTTCTATTTCTACCCAGCCTGGGCCTATCTATGCTATTCCAGCTTAATCAAGATCCCACTTTCCCTCGGCGAATCCTTAGTTTGGACTTCTCTTACTCACTACGTCATTGGCTTCACCCCTCAACCTATCAGTTTATTACTTACACCACTTGCCAATCGCAGATGGATGGATTTCAAGGAGTTGAAGATAACAATTAGTGAAATTTTGATCAGTTTGGAGTTATCCCAAGAGTGTTGTGGTTCTTGGAGGAGGTTTATTGAAATAGGACTTGAAGGAGATGCCAATTCTGACGGTGAAGAAGATGAAATGGAGGACACTGATGATGTAGAAGTGGAACATCTACACATTTCAGATTACCAAGGTTTTGCACTAATATTCGATTGA

Coding sequence (CDS)

ATGGCTATTCAAAGAGTTGAAGTTTTCTATAAACAAAAACAGTTCTATTTCTACCCAGCCTGGGCCTATCTATGCTATTCCAGCTTAATCAAGATCCCACTTTCCCTCGGCGAATCCTTAGTTTGGACTTCTCTTACTCACTACGTCATTGGCTTCACCCCTCAACCTATCAGTTTATTACTTACACCACTTGCCAATCGCAGATGGATGGATTTCAAGGAGTTGAAGATAACAATTAGTGAAATTTTGATCAGTTTGGAGTTATCCCAAGAGTGTTGTGGTTCTTGGAGGAGGTTTATTGAAATAGGACTTGAAGGAGATGCCAATTCTGACGGTGAAGAAGATGAAATGGAGGACACTGATGATGTAGAAGTGGAACATCTACACATTTCAGATTACCAAGGTTTTGCACTAATATTCGATTGA

Protein sequence

MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLLLTPLANRRWMDFKELKITISEILISLELSQECCGSWRRFIEIGLEGDANSDGEEDEMEDTDDVEVEHLHISDYQGFALIFD

Homology

[Close]

BLAST of CsaV3_1G017290 vs. NCBI nr
Match: KGN65068.1 (hypothetical protein Csa_1G190180 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLL 60
           MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLL
Sbjct: 32  MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLL 91

Query: 61  LTPLANRRWM 71
           LTPLANRRWM
Sbjct: 92  LTPLANRRWM 101

[Close]

BLAST of CsaV3_1G017290 vs. NCBI nr
Match: XP_011652141.1 (PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] >KGN59365.1 hypothetical protein Csa_3G814320 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPI 58
           M IQR+EVFYKQKQFYFYPAWAY   ++++KIPLSL ESLVWTSLT+YVIGFTPQPI
Sbjct: 598 MTIQRLEVFYKQKQFYFYPAWAYAIPAAILKIPLSLVESLVWTSLTYYVIGFTPQPI 654

[Close]

BLAST of CsaV3_1G017290 vs. NCBI nr
Match: XP_008443150.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 7.6e-16
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPI 58
           M IQR+EVFYKQKQ YFYPAWAY   ++++KIPLSL ES+VWTSLT+YVIGF PQP+
Sbjct: 604 MTIQRLEVFYKQKQLYFYPAWAYAIPAAILKIPLSLLESIVWTSLTYYVIGFAPQPV 660

[Close]

BLAST of CsaV3_1G017290 vs. NCBI nr
Match: XP_008443151.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 7.6e-16
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPI 58
           M IQR+EVFYKQKQ YFYPAWAY   ++++KIPLSL ES+VWTSLT+YVIGF PQP+
Sbjct: 418 MTIQRLEVFYKQKQLYFYPAWAYAIPAAILKIPLSLLESIVWTSLTYYVIGFAPQPV 474

[Close]

BLAST of CsaV3_1G017290 vs. NCBI nr
Match: XP_022935421.1 (pleiotropic drug resistance protein 3-like [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 8.4e-15
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           M IQR+EVFYKQKQFYFY AWAY   ++++KIPLSL ESLVWT LT+YVIGFTPQ
Sbjct: 579 MTIQRLEVFYKQKQFYFYQAWAYAIPTAILKIPLSLVESLVWTCLTYYVIGFTPQ 633

[Close]

BLAST of CsaV3_1G017290 vs. TAIR10
Match: AT2G37280.1 (pleiotropic drug resistance 5)

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQP 57
           M +QR+ VFYKQKQ  FYPAWAY   ++++KIPLS  ESLVWT LT+YVIG+TP+P
Sbjct: 564 MTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEP 619

[Close]

BLAST of CsaV3_1G017290 vs. TAIR10
Match: AT3G53480.1 (pleiotropic drug resistance 9)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           M  QR+ VFYKQKQ  FYPAWAY   ++++K+PLS  ESLVWT L++YVIG+TP+
Sbjct: 599 MTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPE 653

[Close]

BLAST of CsaV3_1G017290 vs. TAIR10
Match: AT4G15233.2 (ABC-2 and Plant PDR ABC-type transporter family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           + I R+ VF KQK+ YFYPAWAY   S+++KIP+S  ES +WT LT+YVIG++P+
Sbjct: 565 LTISRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGYSPE 619

[Close]

BLAST of CsaV3_1G017290 vs. TAIR10
Match: AT4G15236.1 (ABC-2 and Plant PDR ABC-type transporter family protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           + + R+ VF KQK+ YFYPAWAY   S+++KIP+S  ES +WT LT+YVIG++P+
Sbjct: 561 LTVSRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGYSPE 615

[Close]

BLAST of CsaV3_1G017290 vs. TAIR10
Match: AT4G15230.1 (pleiotropic drug resistance 2)

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-13
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           + I R+ VF KQK  YFYPAWAY   S ++KIPLS+ +S +WT LT+YVIG++P+
Sbjct: 566 LTISRLGVFCKQKDLYFYPAWAYAIPSIILKIPLSVLDSFIWTLLTYYVIGYSPE 620

[Close]

BLAST of CsaV3_1G017290 vs. Swiss-Prot
Match: sp|Q9ZUT8|AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-15
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQP 57
           M +QR+ VFYKQKQ  FYPAWAY   ++++KIPLS  ESLVWT LT+YVIG+TP+P
Sbjct: 564 MTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEP 619

[Close]

BLAST of CsaV3_1G017290 vs. Swiss-Prot
Match: sp|Q8GU83|AB41G_ORYSJ (ABC transporter G family member 41 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG41 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 32/55 (58.18%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           +A+ R+ VFYKQ+ +YFYPAWAY   S ++KIPLSL ES+ WTS+++Y+IG+TP+
Sbjct: 584 IAVSRLPVFYKQRDYYFYPAWAYAIPSFILKIPLSLVESITWTSISYYLIGYTPE 638

[Close]

BLAST of CsaV3_1G017290 vs. Swiss-Prot
Match: sp|Q9LFH0|AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           M  QR+ VFYKQKQ  FYPAWAY   ++++K+PLS  ESLVWT L++YVIG+TP+
Sbjct: 599 MTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPE 653

[Close]

BLAST of CsaV3_1G017290 vs. Swiss-Prot
Match: sp|Q5W274|PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           M I R+ VFYKQ +  FYPAWAY   ++++KIPLSL ES++W S+T+YVIGF+P+
Sbjct: 597 MTITRLAVFYKQSELCFYPAWAYTIPATILKIPLSLLESVIWASMTYYVIGFSPE 651

[Close]

BLAST of CsaV3_1G017290 vs. Swiss-Prot
Match: sp|Q7PC82|AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana OX=3702 GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-12
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQ 56
           + I R+ VF KQK+ YFYPAWAY   S+++KIP+S  ES +WT LT+YVIG++P+
Sbjct: 565 LTISRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGYSPE 619

[Close]

BLAST of CsaV3_1G017290 vs. TrEMBL
Match: tr|A0A0A0LTH3|A0A0A0LTH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G190180 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLL 60
           MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLL
Sbjct: 32  MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLL 91

Query: 61  LTPLANRRWM 71
           LTPLANRRWM
Sbjct: 92  LTPLANRRWM 101

[Close]

BLAST of CsaV3_1G017290 vs. TrEMBL
Match: tr|A0A0A0LBH1|A0A0A0LBH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814320 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.2e-18
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPI 58
           M IQR+EVFYKQKQFYFYPAWAY   ++++KIPLSL ESLVWTSLT+YVIGFTPQPI
Sbjct: 598 MTIQRLEVFYKQKQFYFYPAWAYAIPAAILKIPLSLVESLVWTSLTYYVIGFTPQPI 654

[Close]

BLAST of CsaV3_1G017290 vs. TrEMBL
Match: tr|A0A1S3B6X0|A0A1S3B6X0_CUCME (pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486825 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.0e-16
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPI 58
           M IQR+EVFYKQKQ YFYPAWAY   ++++KIPLSL ES+VWTSLT+YVIGF PQP+
Sbjct: 604 MTIQRLEVFYKQKQLYFYPAWAYAIPAAILKIPLSLLESIVWTSLTYYVIGFAPQPV 660

[Close]

BLAST of CsaV3_1G017290 vs. TrEMBL
Match: tr|A0A1S3B7C4|A0A1S3B7C4_CUCME (pleiotropic drug resistance protein 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486825 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.0e-16
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPI 58
           M IQR+EVFYKQKQ YFYPAWAY   ++++KIPLSL ES+VWTSLT+YVIGF PQP+
Sbjct: 418 MTIQRLEVFYKQKQLYFYPAWAYAIPAAILKIPLSLLESIVWTSLTYYVIGFAPQPV 474

[Close]

BLAST of CsaV3_1G017290 vs. TrEMBL
Match: tr|A0A2N9IF51|A0A2N9IF51_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52328 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.5e-15
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   MAIQRVEVFYKQKQFYFYPAWAYLCYSSLIKIPLSLGESLVWTSLTHYVIGFTPQPISLL 60
           M I+R+E+FYKQK+F FYPAWAY   SS++K+PLS  ESLVWTSLT+YVIG++P+  S +
Sbjct: 285 MTIERLEIFYKQKEFCFYPAWAYAIPSSVLKVPLSFVESLVWTSLTYYVIGYSPEIQSSM 344

Query: 61  LTPLANRRW---MDFKELKITISEIL 84
              L    W   + + E+ +T++E L
Sbjct: 345 PVSLKWGFWVSPLTYGEIGLTLNEFL 370

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017290 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65068.1	4.4e-32	100.00	hypothetical protein Csa_1G190180 [Cucumis sativus]	[more]
XP_011652141.1	1.4e-17	80.70	PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] >KGN5936...	[more]
XP_008443150.1	7.6e-16	73.68	PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo]	[more]
XP_008443151.1	7.6e-16	73.68	PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo]	[more]
XP_022935421.1	8.4e-15	76.36	pleiotropic drug resistance protein 3-like [Cucurbita moschata]	[more]

BLAST of CsaV3_1G017290 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37280.1	1.4e-16	66.07	pleiotropic drug resistance 5	[more]
AT3G53480.1	1.3e-14	61.82	pleiotropic drug resistance 9	[more]
AT4G15233.2	1.5e-13	56.36	ABC-2 and Plant PDR ABC-type transporter family protein	[more]
AT4G15236.1	1.9e-13	54.55	ABC-2 and Plant PDR ABC-type transporter family protein	[more]
AT4G15230.1	9.6e-13	56.36	pleiotropic drug resistance 2	[more]

BLAST of CsaV3_1G017290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUT8\|AB33G_ARATH	2.6e-15	66.07	ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=...	[more]
sp\|Q8GU83\|AB41G_ORYSJ	1.1e-13	58.18	ABC transporter G family member 41 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
sp\|Q9LFH0\|AB37G_ARATH	2.4e-13	61.82	ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=...	[more]
sp\|Q5W274\|PDR3_TOBAC	1.6e-12	58.18	Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 ...	[more]
sp\|Q7PC82\|AB42G_ARATH	2.7e-12	56.36	ABC transporter G family member 42 OS=Arabidopsis thaliana OX=3702 GN=ABCG42 PE=...	[more]

BLAST of CsaV3_1G017290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTH3\|A0A0A0LTH3_CUCSA	2.9e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G190180 PE=4 SV=1	[more]
tr\|A0A0A0LBH1\|A0A0A0LBH1_CUCSA	9.2e-18	80.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814320 PE=3 SV=1	[more]
tr\|A0A1S3B6X0\|A0A1S3B6X0_CUCME	5.0e-16	73.68	pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S3B7C4\|A0A1S3B7C4_CUCME	5.0e-16	73.68	pleiotropic drug resistance protein 3-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2N9IF51\|A0A2N9IF51_FAGSY	9.5e-15	51.16	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52328 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR013525	ABC_2_trans

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G017290.1	CsaV3_1G017290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013525	ABC-2 type transporter	PFAM	PF01061	ABC2_membrane	coord: 3..61 e-value: 5.4E-7 score: 29.1
None	No IPR available	PANTHER	PTHR19241	ATP-BINDING CASSETTE TRANSPORTER	coord: 1..56
None	No IPR available	PANTHER	PTHR19241:SF259	ABC TRANSPORTER G FAMILY MEMBER 33-RELATED	coord: 1..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G017290	CsGy1G015710	Cucumber (Gy14) v2	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G017290	Cucurbita maxima (Rimu)	cmacucB0241
CsaV3_1G017290	Cucurbita moschata (Rifu)	cmocucB0228
CsaV3_1G017290	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G017290	Cucurbita pepo (Zucchini)	cpecucB0640
CsaV3_1G017290	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G017290	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G017290	Melon (DHL92) v3.5.1	cucmeB017
CsaV3_1G017290	Melon (DHL92) v3.6.1	cucmedB014
CsaV3_1G017290	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G017290	Watermelon (97103) v1	cucwmB057
CsaV3_1G017290	Watermelon (97103) v2	cucwmbB008
CsaV3_1G017290	Wax gourd	cucwgoB039
CsaV3_1G017290	Wax gourd	cucwgoB063
CsaV3_1G017290	Silver-seed gourd	carcucB1083