CsaV3_1G017050 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G017050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 11568871 .. 11570000 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAGAGAAAAAGAGTATCAACGAGTTGTGGAAAAAAAATAAACACCTACTTGTAGCCTTAGTCATCTCGAAAAAGAAGAAGAAGTTAATATAATGATTGATTATGCAACAACATATTGCTCTACGGTTAGTGTTTAATTCATTATCTTCTGCTTTATTTTGTTTAAAATTGCTCAACTTCAAAATAAAGAACAATTGTGTTTTCTTCTTCTTCTTCTTCTTTTTTTGCAAGGAATTGTGGTCCTTGAAACACAGAGTGATTGTAAACAAGAGAAACTGCAAATTTAGAAACACCAAACACACAATTGTTGTTAGAGGTTTAATTCTTTTACAAACAATAAATTTATCACACCCTATTGGAATAGACTGAGATAGTGCTCTATCTCTATCTAACCATGATAGTTAGAAATAGTCATCTATATCGATATATGTAAGATGGGCAATCCTAAACATCTATATGATTTCTTTTGAAATTTGTACTCTATATTTTTATAGATAGATGAAGAAGAACAAAATACCAAAACTACAGATAAGAGACACCAAAAAATAAGTGTTGACCCAAGTTTCATTCTTTTGTACACAATTGATTGCACAATCGTTTATATTTTATTACACAACCGTTTTGATGTTGTTGAACAATTGTTTAGATTTTGCTGCACAATCGTTTACATTTTGTTGCACGGCCATTTATACAACTACCTTTTTAATTCTTACTTTCAAACAGATGAAGATCAAACTGATAAAGAAGAAGAAGTTGAAGTACAAAGCGAAGAAGAATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACGTAAATATTGATAGTTCTTTATCTCTGTTTATCTAAGAAAAATAAATAACTATCCTAGTCTACCCTTCATTGTTCTTCTTATAAACTCCAATATTTTCTTGCAGCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCA

mRNA sequence

ATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCA

Coding sequence (CDS)

ATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCA

Protein sequence

MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQKGKLVVDDDDETEEEIAX
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017050.1CsaV3_1G017050.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 19..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..40

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G017050CSPI01G15770Wild cucumber (PI 183967)cpicucB001
CsaV3_1G017050CsGy1G015470Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_1G017050CsaV3_UNG053430Cucumber (Chinese Long) v3cuccucB056