CSPI01G15770 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G15770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 11292219 .. 11294526 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATGTAAGTAAATTTACAATATTTTCTATCTTTGTTTATCATTGGTTATCAATATTGTTGCTACTTTATCACTAATCATCTAACATCATTTTACTTGAAGCTTTGTATGATGCCATTAGATTCAAGAGAAGAAAAATCTCAGAAAATTTTGAAATATTTCAAAGAAATTGAGGCGTAGGAGAAAAAAGAACATATAGAGATACATTAAGAAGAAAAAAGAAAGAAATGGAAACAAACCTAGGAATAATACAAACAAACAAAATCTTGAATGAAATAAGTGAAATTAGAAAAAATCAAGAGAAAATGGAAGCAAAACAAATTTTGTTACAATAAGGCCAAAAAGAAACAAAAACAATATTAAAAAAGGTCAAGAAGAAATAAAAAGAATGTCGATAATGGTTATGAGAAGCTTAAATATTAGGCTACCATTAGAAAATCTTCCATAACAACAAAAAGAGAGAAAAAGAGTATCAACCAGTTGTGGAAAAAAATAAACCACCTACTTGTAGCCTTAGTCATCTCGAAAAAGAAGAAGAAGTTAATATAATGATTGACTATGTAACAACATATTGCTCTACCGTTAGTGTTTAATTCATTATCTTCTGCTTTATTTTGTTTAAAATTGCTCAACTTCAAAATAAAGAACAATTGTGTTTTCTTCTACTTCTTCTTCTTTTTTTTTTTTGCAAGGAATTACTAGAAGAAAACTTGTCTACTATGACAGTTATATATCTCAAAAAATGAATGGGAAAATAAAAAACTGTCACAAAATAGAAAATTTCACGTTTTTGGCGGGAAAAGACGGAATTTTTCGGAAAACACTTTTCGCGACAGTTATTTAATGTCATAGAATGTTACCATTAAAAAATTTATTATTTTATATTTAAAAAATTAAATTTACATATTTATATTTTAAAAAAAAACCCAAATTCCCCAAGATTTTCCTTCACAAAAGTGCCCTAAATTTCCCCAAAATTTTCCCCAATTTCTTCCTCCCATCCGCGCGCATTGTGCCCTAAATTTCCCCCATTCCTCCCGTTCGCGTTTCTCCCAATTCCGGCCATCTTAAGTCCCGTCGCCACCACCACCCCCCTCCTGCCCGTCCGTCCAAACCTCCTCCACCAACCCGTCGCCACCACCCCCGTCTTCTCCAAACCTCTGCAATCAACCCGAAGCTTCAAATCGTGGGCGTCGGTCGTCACCCCTCCGCCGGTAAGCTTCTCTTCCTTATCTCTTTCTCTCTCTATCTATGAAGTTCTTCTTTGTCTCCATTGGATTGTTTTGTGAGTTTCAGTTTTTCCCAATTTCAGTCATTAATCGTTGAATTTCTGTTATATGACCTTAATTTCAGTCCATCTTACAATTAATTGTGGTCCTTGAAACACAAAGTGATTGTAAACAAGAGAAACTGCAAATTTTGAAACACCAAACACACAATTGTTGTTAGAGGTTTAATTCTTTTACAAACAATAAATTTATCACACCCTATTGGAATAGACTGAGATAGTGCTCTATCTCTATCTAACCATGATAGTTAGAAATAGTCATCTATATCGATATATGTAAGATGGACAAAATCCTAAACATCTATATGATTTTTTTTAAAATTTGTACTCTATATTTTTATAGATAGATGAAGAAGAACAAAATATCAAAACTACAGATATAGAGACACCAAAAACATAAGTGTTGACCCAAGTTTCATTATTTTGTACACAATTGGTTGCACGATCGTTTATATTTTATTACACAATCGTTTTGATGTTGTTGAACAATTGTTTAGATTTCGCTGCACAATCGTTTACATTTTGTTGCACGGCCATTTATACAACTACTTTTTTAATTCTTACTTTCAAACAGATGAAGATCAAACTGATAAAGAAGAAGAAGTTGAAGTACAAAGCGAAGAAGACAATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAATAAAACAAAGCCAAGAGCAAAACGTAAATATTGATAGTTCTTTATCTCTGTTTATCTAAGAAAAATAAATAACTATCCTAGTCTACCCTTGATTGTTCTTCTTATAAACTCCAATATTTTCTTGCAGCAAATCATTGAAGAAAAGAAAATAGAAACAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATACAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCAGTGATAGCGAAGAAGATGCAGAAGAAGAAATATGA

mRNA sequence

ATGAGGATTCCCGTCGCCACCACCACCCCCCTCCTGCCCGTCCGTCCAAACCTCCTCCACCAACCCGTCGCCACCACCCCCGTCTTCTCCAAACCTCTGCAATCAACCCGAAGCTTCAAATCGTGGGCGTCGGTCGTCACCCCTCCGCCGATGAAGATCAAACTGATAAAGAAGAAGAAGTTGAAGTACAAAGCGAAGAAGACAATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAATAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAAATAGAAACAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATACAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCAGTGATAGCGAAGAAGATGCAGAAGAAGAAATATGA

Coding sequence (CDS)

ATGAGGATTCCCGTCGCCACCACCACCCCCCTCCTGCCCGTCCGTCCAAACCTCCTCCACCAACCCGTCGCCACCACCCCCGTCTTCTCCAAACCTCTGCAATCAACCCGAAGCTTCAAATCGTGGGCGTCGGTCGTCACCCCTCCGCCGATGAAGATCAAACTGATAAAGAAGAAGAAGTTGAAGTACAAAGCGAAGAAGACAATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAATAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAAATAGAAACAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATACAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCAGTGATAGCGAAGAAGATGCAGAAGAAGAAATATGA
Homology
[Close]
BLAST of CSPI01G15770 vs. TrEMBL
Match: A0A0A0LW59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181490 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.1e-32
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 1 

Query: 69  MKHYMKVMKKENMRRKTKRIKQSQEQNQIIEEKKIETEDEEVKEEQNQEDTDNESEEILF 128
           MKHYMKVMKKENMRRKTKR KQSQEQNQIIEEKK+E EDEEVKEEQNQED DNESEEILF
Sbjct: 1   MKHYMKVMKKENMRRKTKR-KQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILF 60

Query: 129 TIRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 163
           TIRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI
Sbjct: 61  TIRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 93

[Close]
BLAST of CSPI01G15770 vs. NCBI nr
Match: gi|700209941|gb|KGN65037.1| (hypothetical protein Csa_1G181490 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 1 

Query: 69  MKHYMKVMKKENMRRKTKRIKQSQEQNQIIEEKKIETEDEEVKEEQNQEDTDNESEEILF 128
           MKHYMKVMKKENMRRKTKR KQSQEQNQIIEEKK+E EDEEVKEEQNQED DNESEEILF
Sbjct: 1   MKHYMKVMKKENMRRKTKR-KQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILF 60

Query: 129 TIRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 163
           TIRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI
Sbjct: 61  TIRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 93

The following BLAST results are available for this feature:
BLAST of CSPI01G15770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G15770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW59_CUCSA9.1e-3295.74Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181490 PE=4 SV=1[more]
BLAST of CSPI01G15770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G15770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209941|gb|KGN65037.1|1.3e-3195.74hypothetical protein Csa_1G181490 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G15770.1CSPI01G15770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 81..108
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G15770CsaV3_1G017050Cucumber (Chinese Long) v3cpicucB001
CSPI01G15770CsaV3_UNG053430Cucumber (Chinese Long) v3cpicucB060
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G15770Cucumber (Gy14) v1cgycpiB017
CSPI01G15770Cucumber (Gy14) v1cgycpiB286
CSPI01G15770Cucurbita maxima (Rimu)cmacpiB212
CSPI01G15770Cucurbita maxima (Rimu)cmacpiB224
CSPI01G15770Cucurbita maxima (Rimu)cmacpiB403
CSPI01G15770Cucurbita moschata (Rifu)cmocpiB200
CSPI01G15770Cucurbita moschata (Rifu)cmocpiB211
CSPI01G15770Cucurbita moschata (Rifu)cmocpiB385
CSPI01G15770Cucumber (Chinese Long) v2cpicuB000
CSPI01G15770Melon (DHL92) v3.5.1cpimeB016
CSPI01G15770Watermelon (Charleston Gray)cpiwcgB022
CSPI01G15770Watermelon (Charleston Gray)cpiwcgB025
CSPI01G15770Watermelon (97103) v1cpiwmB050
CSPI01G15770Watermelon (97103) v1cpiwmB054
CSPI01G15770Cucurbita pepo (Zucchini)cpecpiB017
CSPI01G15770Cucurbita pepo (Zucchini)cpecpiB051
CSPI01G15770Cucurbita pepo (Zucchini)cpecpiB511
CSPI01G15770Bottle gourd (USVL1VR-Ls)cpilsiB019
CSPI01G15770Bottle gourd (USVL1VR-Ls)cpilsiB033
CSPI01G15770Bottle gourd (USVL1VR-Ls)cpilsiB038
CSPI01G15770Melon (DHL92) v3.6.1cpimedB025
CSPI01G15770Cucumber (Gy14) v2cgybcpiB001
CSPI01G15770Cucumber (Gy14) v2cgybcpiB249
CSPI01G15770Silver-seed gourdcarcpiB0055
CSPI01G15770Silver-seed gourdcarcpiB0435
CSPI01G15770Silver-seed gourdcarcpiB1074
CSPI01G15770Cucumber (Chinese Long) v3cpicucB052
CSPI01G15770Watermelon (97103) v2cpiwmbB005
CSPI01G15770Watermelon (97103) v2cpiwmbB009
CSPI01G15770Wax gourdcpiwgoB036
CSPI01G15770Wild cucumber (PI 183967)cpicpiB039