CsaV3_1G015860 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015860
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Senescence regulator
Location	chr1 : 11412844 .. 11414831 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCGTCCACCATAGCCACTCCACTCCTTCTTCCTCTTCCTCTTCAACTCCTCGTCACCATATTCATCACCTCCAGCATCACAAGGGTTTTCCTCTGCCTGAAACCTTCGGAATTCTCGCTGCTCTTCCCGAGAACGAGGCCTCCTCCAGTCTTAGAAACTCTTCTCATTTCTATCACAAGGCCTCTGTTTCGTCTTCTTCCTCCTCCTCCCCTTCGTCTTCTCGTATGATTCCCACGATCCCCAAACCTCCTCTGGACCGATTGCCTCTTCCCATTTCGACCTCGTTGAAGTACCAGTCTGCACCTGTGAATGTGCCAATAATGTCGAAGGCGGTTGTTCAAAGACAGCTGGAGGTTGATGTGGACGATGTTGATGAAGACGATGGGGAGATGTTGCCGCCGCATGAGATTGTGGCTAGAAGTTTGGCTCAGTCGCCGATGTTGTCGTGCTCTGTGCTTGAGGGAGCTGGAAGGACGTTAAAAGGGAGGGATCTTCGTCAGGTTCGCAACGCGGTTTGGAGACGAACAGGTTTTCTTGATTAAGGAATTGAATTCCAGTAATTATTTTTGGAGAACAGATTTGCACCATTCGCTAAGCTGCTACTGTCTGGTTCACTTTGACCACTTCTTGTGTCGCTCTTTTTAGAAATATATATTGAGGGTCCAGGAATATTTGAATCTGCTTGACACTCATCGTAACGAGGAATTGGAATTGTAATTATCTGAAGGGCGCCTAAGAATTTTCTTTGAAGCTTATTTGTAAGTTTGACTGTTATCTCAAACGTTTTTCAATCCATCATTATTAAATTCTAGTAATATTATTAGATTTTCATCTACTATTTCTTTCAGTCAGAAGATTTTTCATTTCTTTCTTTCTATTTTCTCTTCCATTACAATGGTTCATCCGGAATCGGGGGATTCTACATAAAACTATTGGGCGCCAACCTTGTAAAGATTAAAATTCAGAAAACAGAGTTCCCAGGAGAGGGGTTTACCATTCTTTTTTTTAGTTGGGAGGACAATTATGCTTAATTAAGTCGTATAAGGTGACATTGAATCATTCATATAATGGAGACTGTTTCTTTTTTTTTTACTCATTGAATTAATTAACATCTCACCAGTTGCAAATTTTTCCAAATTTCTTGGACGCGTGAATTTAGAAATGAACTTCATGTTTGATTCATGCAGTTGAAAGTGTTTATTTCTGGTTATTATGGAGCTTTCCCTCTTTTATCACCACCCCTTTTTACATGAGTGTGATAGTCATGTCTTTCGTTAGAATATTGCAAGTTGTGAATGATTGAATTTGTTATTTATGAGGCCTTCTTGTGAGAACTAGAACCTTAACGTGTCTGTTTATTGGGGTTAAACCTTAGAGAGCATAGTTATTCGTTTATTGGTGCATTGGGAAGTGCATCTTTTTTTCTTTTCTTTACCATTCTCTCTATTCATCAGGTGGTGGGAAGGGGACCAGGTGGATCAGTGATTCTGATATGGAGGGTCTGTATGGACGAGTGAAAATGGGGAAGGGAGGAATAATTGTAGAGGAGAGTGAAGGAACTTGAGCAACGTGGTGAAGGAAGTATGAGCACCCATGTTTTAATTAGTTCAACATTCCAAACTTCAATTCATGAAAATAGCATTATAGACAAAATGGTTGGCACCTTGGTTCAGAGGCAATGGTCTCTGTATTATGGCTATAGCATCTAGGACAAAGAAAAACAACACGCAAATGGTGAAACAAAAGAAGAGCATTAGAGAGATCCGAAACTTCAAATGCTTAATCTCATGAGTAAAAGCTACATCCTTGCTTTGAGAGGGGTCCTTGTCAGCATAAGTACTAACTCTACAATCTACCTTCCTCTTATTGGCTTTTTCTCCACTTTGGTTTCATGCATCTTTGTTATGGGTGGATAAGGATGTATTCGGTTTGGTTTTTTATTTGCCATCAGGTGCTTCATATTGATATTCCTTGGGTTTTTTTGT

mRNA sequence

ATGATTCCCACGATCCCCAAACCTCCTCTGGACCGATTGCCTCTTCCCATTTCGACCTCGTTGAAGTACCAGTCTGCACCTGTGAATGTGCCAATAATGTCGAAGGCGGTTGTTCAAAGACAGCTGGAGGTTGATGTGGACGATGTTGATGAAGACGATGGGGAGATGTTGCCGCCGCATGAGATTGTGGCTAGAAGTTTGGCTCAGTCGCCGATGTTGTCGTGCTCTGTGCTTGAGGGAGCTGGAAGGACGTTAAAAGGGAGGGATCTTCGTCAGGTTCGCAACGCGGTTTGGAGACGAACAGGTTTTCTTGATTAA

Coding sequence (CDS)

ATGATTCCCACGATCCCCAAACCTCCTCTGGACCGATTGCCTCTTCCCATTTCGACCTCGTTGAAGTACCAGTCTGCACCTGTGAATGTGCCAATAATGTCGAAGGCGGTTGTTCAAAGACAGCTGGAGGTTGATGTGGACGATGTTGATGAAGACGATGGGGAGATGTTGCCGCCGCATGAGATTGTGGCTAGAAGTTTGGCTCAGTCGCCGATGTTGTCGTGCTCTGTGCTTGAGGGAGCTGGAAGGACGTTAAAAGGGAGGGATCTTCGTCAGGTTCGCAACGCGGTTTGGAGACGAACAGGTTTTCTTGATTAA

Protein sequence

MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD

Homology

[Close]

BLAST of CsaV3_1G015860 vs. NCBI nr
Match: KGN64943.1 (hypothetical protein Csa_1G165750 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 2.1e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 60
           MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH
Sbjct: 137 MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 196

Query: 61  EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD
Sbjct: 197 EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 241

[Close]

BLAST of CsaV3_1G015860 vs. NCBI nr
Match: XP_008461249.1 (PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903097.1 PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903098.1 PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903100.1 PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 2.3e-49
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 60
           MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVD VDEDDGEMLPPH
Sbjct: 137 MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDYVDEDDGEMLPPH 196

Query: 61  EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD
Sbjct: 197 EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 241

[Close]

BLAST of CsaV3_1G015860 vs. NCBI nr
Match: XP_011648459.1 (PREDICTED: uncharacterized protein LOC105434471 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 2.5e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 60
           MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH
Sbjct: 137 MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 196

Query: 61  EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 103
           EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 197 EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 238

[Close]

BLAST of CsaV3_1G015860 vs. NCBI nr
Match: XP_022945942.1 (uncharacterized protein LOC111450033 [Cucurbita moschata])

HSP 1 Score: 193.7 bits (491), Expect = 3.1e-46
Identity = 96/105 (91.43%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 60
           MIPTIPKPPL+RLPLPIS+SLKYQSAPVNVP+MSKA VQR  E+DVDDVDE DGEMLPPH
Sbjct: 140 MIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRHQEIDVDDVDESDGEMLPPH 199

Query: 61  EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           EIVARSLAQSP+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD
Sbjct: 200 EIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 244

[Close]

BLAST of CsaV3_1G015860 vs. NCBI nr
Match: XP_023522766.1 (uncharacterized protein LOC111786770 [Cucurbita pepo subsp. pepo] >XP_023542094.1 uncharacterized protein LOC111802081 [Cucurbita pepo subsp. pepo] >XP_023542448.1 uncharacterized protein LOC111802350 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.7 bits (491), Expect = 3.1e-46
Identity = 96/105 (91.43%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 60
           MIPTIPKPPL+RLPLPIS+SLKYQSAPVNVP+MSKA VQR  E+DVDDVDE DGEMLPPH
Sbjct: 138 MIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRHQEIDVDDVDESDGEMLPPH 197

Query: 61  EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           EIVARSLAQSP+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD
Sbjct: 198 EIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 242

[Close]

BLAST of CsaV3_1G015860 vs. TAIR10
Match: AT3G15040.1 (Protein of unknown function, DUF584)

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 67/113 (59.29%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 2   IPTIPKPPLDRLPLPIS--TSLKY-QSAPVNVPIMSKAVVQR-QLEVDVDD-----VDED 61
           IPT PKPP +RLP   S     KY QSAPV VP++S A++ R + E  + D         
Sbjct: 131 IPTAPKPPQERLPFSASFVGGGKYPQSAPVQVPLVSSAMMNRHKKEFKLTDXXXXXXXXX 190

Query: 62  DGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
                  HEIVARSLAQS +LSCSVLEGAGRTLKGRDLRQVRNAV+RRTGF+D
Sbjct: 191 XXXXXXXHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243

[Close]

BLAST of CsaV3_1G015860 vs. TAIR10
Match: AT4G21970.1 (Protein of unknown function, DUF584)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-15
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 17  ISTSLKYQSAPVNVPIMSKAVVQRQLEVD-------VDDVDEDDGEMLPPHEIVARSLAQ 76
           +S   K  SAP+N+P  SK     +           +D  D+D+G M+PPHE+VA+ LA+
Sbjct: 52  VSGGAKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAID--DDDEGSMVPPHELVAKRLAR 111

Query: 77  SPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           + + S S+ EG GRTLKGRDL + RNAV  RTGFL+
Sbjct: 112 TQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLE 145

[Close]

BLAST of CsaV3_1G015860 vs. TAIR10
Match: AT2G34340.1 (Protein of unknown function, DUF584)

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-12
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 25  SAPVNVP--IMSKAVVQRQLEVDVDDVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAG 84
           S PV++P  I  + V + + E   ++  E  GEM+PPH ++ R + Q   ++ SV  G+G
Sbjct: 54  SLPVSIPENIFRRYVGKEEDEYSEEEYSEGGGEMIPPHIMIGRRI-QGGQMAFSVCSGSG 113

Query: 85  RTLKGRDLRQVRNAVWRRTGFLD 106
           RTLKGRDL +VRN+V R TGFL+
Sbjct: 114 RTLKGRDLSRVRNSVLRLTGFLE 135

[Close]

BLAST of CsaV3_1G015860 vs. TAIR10
Match: AT4G04630.1 (Protein of unknown function, DUF584)

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-12
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 19  TSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGE---------MLPPHEIVARSLAQ 78
           + +K  SAP+NVP  SK     +       +               M+PPHE VAR LA+
Sbjct: 73  SGVKQSSAPMNVPDWSKVYGDSKSNRRSSHLHXXXXXXXXXXXXXCMVPPHEWVARKLAR 132

Query: 79  SPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           + + S S+ EG GRTLKGRDL +VRNAV  +TGFL+
Sbjct: 133 TQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168

[Close]

BLAST of CsaV3_1G015860 vs. TAIR10
Match: AT3G45210.1 (Protein of unknown function, DUF584)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 14  PLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGE-MLPPHEIVARSLAQSPM 73
           P  ++T+    S P+NV   SK ++ ++    +++ D+D GE  LPPHE     LA++ M
Sbjct: 62  PATVTTTTVASSLPMNVQNWSK-ILGKENRKSIEN-DDDGGEGKLPPHEY----LAKTRM 121

Query: 74  LSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
            S SV EG GRTLKGRD+ +VRNA+  +TGFLD
Sbjct: 122 ASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148

[Close]

BLAST of CsaV3_1G015860 vs. TrEMBL
Match: tr|A0A0A0LT40|A0A0A0LT40_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165750 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 60
           MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH
Sbjct: 137 MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 196

Query: 61  EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD
Sbjct: 197 EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 241

[Close]

BLAST of CsaV3_1G015860 vs. TrEMBL
Match: tr|A0A1S4E4F1|A0A1S4E4F1_CUCME (uncharacterized protein LOC103499884 OS=Cucumis melo OX=3656 GN=LOC103499884 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-49
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDEDDGEMLPPH 60
           MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVD VDEDDGEMLPPH
Sbjct: 137 MIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDYVDEDDGEMLPPH 196

Query: 61  EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD
Sbjct: 197 EIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 241

[Close]

BLAST of CsaV3_1G015860 vs. TrEMBL
Match: tr|W9RQ25|W9RQ25_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016293 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.5e-30
Identity = 77/108 (71.30%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MIPTIPKPPLDRLPLPISTSLKY-QSAPVNVPIMSKAVVQ-RQLEVDVD-DVDEDDGEML 60
           +IP IPKPP DR+  PI++S+KY QSAPVNVP++S+A+ + R    +VD D D+ D EML
Sbjct: 140 LIPVIPKPPQDRI-TPINSSVKYHQSAPVNVPMLSEAMRRPRDFFAEVDADADDGDAEML 199

Query: 61  PPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           PPHEIVARSLA SP+LSCSVLEGAGRTLKGRDLRQVRNAV+R+TGFLD
Sbjct: 200 PPHEIVARSLAHSPLLSCSVLEGAGRTLKGRDLRQVRNAVFRQTGFLD 246

[Close]

BLAST of CsaV3_1G015860 vs. TrEMBL
Match: tr|A0A2N9INP0|A0A2N9INP0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55059 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.6e-30
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 5   IPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDED-----DGEMLPP 64
           IPKPPLDR+PLP  +S+KYQSAPVNVP+MS+A   R    + DDV  D     DGEMLPP
Sbjct: 145 IPKPPLDRMPLP--SSVKYQSAPVNVPLMSRAAAMRTYH-EFDDVINDXXXGGDGEMLPP 204

Query: 65  HEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           HEIVAR  AQSPML+ SVLEGAGRTLKGRDLRQVRNAVWR+TGFLD
Sbjct: 205 HEIVAR--AQSPMLAFSVLEGAGRTLKGRDLRQVRNAVWRQTGFLD 245

[Close]

BLAST of CsaV3_1G015860 vs. TrEMBL
Match: tr|A0A2P4LU48|A0A2P4LU48_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39277 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-30
Identity = 76/101 (75.25%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 6   PKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQLEVDVDDVDED-DGEMLPPHEIVA 65
           PKPP+DR+ LP  +S+KYQSAPVNVP+MS+A        DV+D DE  DGEMLPPHEIVA
Sbjct: 154 PKPPVDRMSLP--SSVKYQSAPVNVPVMSQATRSPHEFDDVNDDDEGVDGEMLPPHEIVA 213

Query: 66  RSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 106
           R  AQSPML+CSVLEGAGRTLKGRDLR+VRNAVWRRTGFLD
Sbjct: 214 R--AQSPMLACSVLEGAGRTLKGRDLRRVRNAVWRRTGFLD 250

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64943.1	2.1e-50	100.00	hypothetical protein Csa_1G165750 [Cucumis sativus]	[more]
XP_008461249.1	2.3e-49	99.05	PREDICTED: uncharacterized protein LOC103499884 [Cucumis melo] >XP_016903097.1 P...	[more]
XP_011648459.1	2.5e-48	100.00	PREDICTED: uncharacterized protein LOC105434471 [Cucumis sativus]	[more]
XP_022945942.1	3.1e-46	91.43	uncharacterized protein LOC111450033 [Cucurbita moschata]	[more]
XP_023522766.1	3.1e-46	91.43	uncharacterized protein LOC111786770 [Cucurbita pepo subsp. pepo] >XP_023542094....	[more]

BLAST of CsaV3_1G015860 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15040.1	1.5e-23	59.29	Protein of unknown function, DUF584	[more]
AT4G21970.1	1.2e-15	45.83	Protein of unknown function, DUF584	[more]
AT2G34340.1	4.6e-12	44.58	Protein of unknown function, DUF584	[more]
AT4G04630.1	7.9e-12	42.71	Protein of unknown function, DUF584	[more]
AT3G45210.1	1.0e-11	45.16	Protein of unknown function, DUF584	[more]

BLAST of CsaV3_1G015860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015860 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT40\|A0A0A0LT40_CUCSA	1.4e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165750 PE=4 SV=1	[more]
tr\|A0A1S4E4F1\|A0A1S4E4F1_CUCME	1.5e-49	99.05	uncharacterized protein LOC103499884 OS=Cucumis melo OX=3656 GN=LOC103499884 PE=...	[more]
tr\|W9RQ25\|W9RQ25_9ROSA	3.5e-30	71.30	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016293 PE=4 SV=1	[more]
tr\|A0A2N9INP0\|A0A2N9INP0_FAGSY	4.6e-30	73.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55059 PE=4 SV=1	[more]
tr\|A0A2P4LU48\|A0A2P4LU48_QUESU	6.0e-30	75.25	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_39277 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007608	Senescence_reg_S40

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015860.1	CsaV3_1G015860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 22..105 e-value: 3.3E-35 score: 122.3
None	No IPR available	PANTHER	PTHR33083	FAMILY NOT NAMED	coord: 1..105
None	No IPR available	PANTHER	PTHR33083:SF42	SUBFAMILY NOT NAMED	coord: 1..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015860	CSPI01G14840	Wild cucumber (PI 183967)	cpicucB006
CsaV3_1G015860	Cucsa.319820	Cucumber (Gy14) v1	cgycucB497
CsaV3_1G015860	CmaCh18G006490	Cucurbita maxima (Rimu)	cmacucB0468
CsaV3_1G015860	CsGy1G014670	Cucumber (Gy14) v2	cgybcucB007
CsaV3_1G015860	MELO3C004692	Melon (DHL92) v3.5.1	cucmeB023
CsaV3_1G015860	ClCG01G012080	Watermelon (Charleston Gray)	cucwcgB022
CsaV3_1G015860	Lsi03G001280	Bottle gourd (USVL1VR-Ls)	cuclsiB052
CsaV3_1G015860	MELO3C004692.2	Melon (DHL92) v3.6.1	cucmedB021
CsaV3_1G015860	Bhi08G000036	Wax gourd	cucwgoB065

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_1G015860	CsaV3_1G014950	Cucumber (Chinese Long) v3	cuccucB001

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015860	Cucumber (Chinese Long) v3	cuccucB019
CsaV3_1G015860	Cucumber (Chinese Long) v3	cuccucB056
CsaV3_1G015860	Silver-seed gourd	carcucB0056
CsaV3_1G015860	Silver-seed gourd	carcucB1084
CsaV3_1G015860	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015860	Cucumber (Gy14) v2	cgybcucB103
CsaV3_1G015860	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G015860	Cucumber (Gy14) v1	cgycucB482
CsaV3_1G015860	Cucurbita maxima (Rimu)	cmacucB0255
CsaV3_1G015860	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015860	Cucurbita moschata (Rifu)	cmocucB0241
CsaV3_1G015860	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G015860	Cucurbita moschata (Rifu)	cmocucB0589
CsaV3_1G015860	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G015860	Cucurbita pepo (Zucchini)	cpecucB0288
CsaV3_1G015860	Cucurbita pepo (Zucchini)	cpecucB0629
CsaV3_1G015860	Cucurbita pepo (Zucchini)	cpecucB0876
CsaV3_1G015860	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015860	Wild cucumber (PI 183967)	cpicucB127
CsaV3_1G015860	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015860	Melon (DHL92) v3.5.1	cucmeB014
CsaV3_1G015860	Melon (DHL92) v3.5.1	cucmeB071
CsaV3_1G015860	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015860	Melon (DHL92) v3.6.1	cucmedB067
CsaV3_1G015860	Watermelon (Charleston Gray)	cucwcgB001
CsaV3_1G015860	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015860	Watermelon (97103) v1	cucwmB002
CsaV3_1G015860	Watermelon (97103) v1	cucwmB057
CsaV3_1G015860	Watermelon (97103) v2	cucwmbB008
CsaV3_1G015860	Watermelon (97103) v2	cucwmbB091
CsaV3_1G015860	Wax gourd	cucwgoB039