CsaV3_1G015700 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015700
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 11251789 .. 11252292 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTAAAGCAATAACCCCTTACGAATCTTACCAAGAAGGTCTAACCCTTGCTGTTTGGTGTCCTAAAACGTCCGAACTTGTAGAACTGAACCTTAAACGTTATAGGCACACTAGTTTGAAGCCAATCAGAGTGTGGATAACAGCCGCAAAAACCTTACGCCCAAGCCAAAAATGCTGCTGCAAGAAACCCAGACGTCGGAAACGTGATGCACAACTTGTTGTTCTCGTTGGAGTCTCAAACGGAGAAAAAACAATGCTTCGAAAGCCTAGGCGAAGTGGTTCGGAGTCGTGCTCACAATGCAAGTCAGGTTGCCGATTGAACGTAGAGCGTCGTCGACTACAGAGCTGGGCGTTTGCGTGGGTGTGGGCTCCAGTCGTCGCTTGCCTTACGCCTGTAGTGCCGGAGTGTCGCCGGAGAAGTAGACTGAGGTACGGGGTTCGGGCGCTGTTTGATGAGAGGGGTGGAAGATGGACGTTTCCTTTTTTTCCCAAATCTTAA

mRNA sequence

ATGGAAATTAAAGCAATAACCCCTTACGAATCTTACCAAGAAGGTCTAACCCTTGCTGTTTGGTGTCCTAAAACGTCCGAACTTGTAGAACTGAACCTTAAACGTTATAGGCACACTAGTTTGAAGCCAATCAGAGTGTGGATAACAGCCGCAAAAACCTTACGCCCAAGCCAAAAATGCTGCTGCAAGAAACCCAGACGTCGGAAACGTGATGCACAACTTGTTGTTCTCGTTGGAGTCTCAAACGGAGAAAAAACAATGCTTCGAAAGCCTAGGCGAAGTGGTTCGGAGTCGTGCTCACAATGCAAGTCAGGTTGCCGATTGAACGTAGAGCGTCGTCGACTACAGAGCTGGGCGTTTGCGTGGGTGTGGGCTCCAGTCGTCGCTTGCCTTACGCCTGTAGTGCCGGAGTGTCGCCGGAGAAGTAGACTGAGGTACGGGGTTCGGGCGCTGTTTGATGAGAGGGGTGGAAGATGGACGTTTCCTTTTTTTCCCAAATCTTAA

Coding sequence (CDS)

ATGGAAATTAAAGCAATAACCCCTTACGAATCTTACCAAGAAGGTCTAACCCTTGCTGTTTGGTGTCCTAAAACGTCCGAACTTGTAGAACTGAACCTTAAACGTTATAGGCACACTAGTTTGAAGCCAATCAGAGTGTGGATAACAGCCGCAAAAACCTTACGCCCAAGCCAAAAATGCTGCTGCAAGAAACCCAGACGTCGGAAACGTGATGCACAACTTGTTGTTCTCGTTGGAGTCTCAAACGGAGAAAAAACAATGCTTCGAAAGCCTAGGCGAAGTGGTTCGGAGTCGTGCTCACAATGCAAGTCAGGTTGCCGATTGAACGTAGAGCGTCGTCGACTACAGAGCTGGGCGTTTGCGTGGGTGTGGGCTCCAGTCGTCGCTTGCCTTACGCCTGTAGTGCCGGAGTGTCGCCGGAGAAGTAGACTGAGGTACGGGGTTCGGGCGCTGTTTGATGAGAGGGGTGGAAGATGGACGTTTCCTTTTTTTCCCAAATCTTAA

Protein sequence

MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKCCCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAFAWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS

Homology

[Close]

BLAST of CsaV3_1G015700 vs. NCBI nr
Match: KGN65015.1 (hypothetical protein Csa_1G181290 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 1.7e-86
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60
           MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC
Sbjct: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60

Query: 61  XXXXXXXXXXDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120
           XXXXXXXXXXDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF
Sbjct: 61  XXXXXXXXXXDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120

Query: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 168
           AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS
Sbjct: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 167

[Close]

BLAST of CsaV3_1G015700 vs. TrEMBL
Match: tr|A0A0A0LT13|A0A0A0LT13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181290 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60
           MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC
Sbjct: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60

Query: 61  XXXXXXXXXXDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120
           XXXXXXXXXXDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF
Sbjct: 61  XXXXXXXXXXDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120

Query: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 168
           AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS
Sbjct: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 167

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65015.1	1.7e-86	100.00	hypothetical protein Csa_1G181290 [Cucumis sativus]	[more]

BLAST of CsaV3_1G015700 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT13\|A0A0A0LT13_CUCSA	1.1e-86	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181290 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015700.1	CsaV3_1G015700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015700	CSPI01G15560	Wild cucumber (PI 183967)	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015700	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015700	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G015700	Cucurbita maxima (Rimu)	cmacucB0468
CsaV3_1G015700	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015700	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G015700	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G015700	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015700	Bottle gourd (USVL1VR-Ls)	cuclsiB044
CsaV3_1G015700	Melon (DHL92) v3.5.1	cucmeB029
CsaV3_1G015700	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015700	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015700	Watermelon (97103) v1	cucwmB049
CsaV3_1G015700	Watermelon (97103) v2	cucwmbB008
CsaV3_1G015700	Wax gourd	cucwgoB039
CsaV3_1G015700	Silver-seed gourd	carcucB0056