CsaV3_1G015260 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015260
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 10842165 .. 10842500 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTCCACGAATTAGACAGGTTGATTAAGATTGAGAAAGGGTTGCTCTCGTTCAACGGTTCTCTACCTGACTTCCTATATGCTCCCATTAAAGCATTGAAGTGGGAAAAATTCTTCACGGACGAGACAAAGGTCAAGTTCGATGTAGTAGATCTATTTTATGCGACAAAGTTTCATCCAAAGGAATCATACGCGATAGTGGATGACGAGAGAGTTCCTTTCACTAAAGAAAAGAGCTCAATGAGTTGTATGGTTTACCTAATGATCTGGACACATACCCTGGCCATAGGCTCATCGCCTAACCCACAGAAAAAGATGCAAGTAGAACTATAA

mRNA sequence

ATGAGCGTCCACGAATTAGACAGGTTGATTAAGATTGAGAAAGGGTTGCTCTCGTTCAACGGTTCTCTACCTGACTTCCTATATGCTCCCATTAAAGCATTGAAGTGGGAAAAATTCTTCACGGACGAGACAAAGGTCAAGTTCGATGTAGTAGATCTATTTTATGCGACAAAGTTTCATCCAAAGGAATCATACGCGATAGTGGATGACGAGAGAGTTCCTTTCACTAAAGAAAAGAGCTCAATGAGTTGTATGGTTTACCTAATGATCTGGACACATACCCTGGCCATAGGCTCATCGCCTAACCCACAGAAAAAGATGCAAGTAGAACTATAA

Coding sequence (CDS)

ATGAGCGTCCACGAATTAGACAGGTTGATTAAGATTGAGAAAGGGTTGCTCTCGTTCAACGGTTCTCTACCTGACTTCCTATATGCTCCCATTAAAGCATTGAAGTGGGAAAAATTCTTCACGGACGAGACAAAGGTCAAGTTCGATGTAGTAGATCTATTTTATGCGACAAAGTTTCATCCAAAGGAATCATACGCGATAGTGGATGACGAGAGAGTTCCTTTCACTAAAGAAAAGAGCTCAATGAGTTGTATGGTTTACCTAATGATCTGGACACATACCCTGGCCATAGGCTCATCGCCTAACCCACAGAAAAAGATGCAAGTAGAACTATAA

Protein sequence

MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL

Homology

[Close]

BLAST of CsaV3_1G015260 vs. NCBI nr
Match: KGN64973.1 (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 2.4e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60
           MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH
Sbjct: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60

Query: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 112
           PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL
Sbjct: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 111

[Close]

BLAST of CsaV3_1G015260 vs. NCBI nr
Match: KGN57764.1 (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 13  EKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 62
           +KGLLSFNG LPDFL+  IKALKWEK    E +VK D+V++FYA KFHP
Sbjct: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]

BLAST of CsaV3_1G015260 vs. NCBI nr
Match: KGN53624.1 (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 8.7e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 5   ELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKES 64
           ELD+LIKIEKGLL F G LPDFL  PIKA KW+KFF  E +     V         P  S
Sbjct: 36  ELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKFFIVEGEKVPSTVKAISKLYDLPNGS 95

Query: 65  YAIVDDERVPFTKEKSSM 83
           YA   D+R+     +S M
Sbjct: 96  YA-YPDQRIIDNPMRSDM 112

[Close]

BLAST of CsaV3_1G015260 vs. TrEMBL
Match: tr|A0A0A0LT82|A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60
           MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH
Sbjct: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60

Query: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 112
           PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL
Sbjct: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 111

[Close]

BLAST of CsaV3_1G015260 vs. TrEMBL
Match: tr|A0A0A0L9V9|A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 13  EKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 62
           +KGLLSFNG LPDFL+  IKALKWEK    E +VK D+V++FYA KFHP
Sbjct: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]

BLAST of CsaV3_1G015260 vs. TrEMBL
Match: tr|A0A0A0KXQ2|A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 5   ELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKES 64
           ELD+LIKIEKGLL F G LPDFL  PIKA KW+KFF  E +     V         P  S
Sbjct: 36  ELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKFFIVEGEKVPSTVKAISKLYDLPNGS 95

Query: 65  YAIVDDERVPFTKEKSSM 83
           YA   D+R+     +S M
Sbjct: 96  YA-YPDQRIIDNPMRSDM 112

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64973.1	2.4e-57	100.00	hypothetical protein Csa_1G169970 [Cucumis sativus]	[more]
KGN57764.1	1.7e-10	67.35	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]
KGN53624.1	8.7e-07	48.72	hypothetical protein Csa_4G091900 [Cucumis sativus]	[more]

BLAST of CsaV3_1G015260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT82\|A0A0A0LT82_CUCSA	1.6e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1	[more]
tr\|A0A0A0L9V9\|A0A0A0L9V9_CUCSA	1.1e-10	67.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1	[more]
tr\|A0A0A0KXQ2\|A0A0A0KXQ2_CUCSA	5.8e-07	48.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015260.1	CsaV3_1G015260.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015260	CSPI01G15150	Wild cucumber (PI 183967)	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015260	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_1G015260	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015260	Cucumber (Gy14) v1	cgycucB496
CsaV3_1G015260	Cucurbita maxima (Rimu)	cmacucB0253
CsaV3_1G015260	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015260	Cucurbita maxima (Rimu)	cmacucB1004
CsaV3_1G015260	Cucurbita moschata (Rifu)	cmocucB0239
CsaV3_1G015260	Cucurbita pepo (Zucchini)	cpecucB0003
CsaV3_1G015260	Wild cucumber (PI 183967)	cpicucB318
CsaV3_1G015260	Bottle gourd (USVL1VR-Ls)	cuclsiB017
CsaV3_1G015260	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015260	Melon (DHL92) v3.5.1	cucmeB016
CsaV3_1G015260	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015260	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015260	Watermelon (Charleston Gray)	cucwcgB029
CsaV3_1G015260	Watermelon (97103) v1	cucwmB049
CsaV3_1G015260	Watermelon (97103) v1	cucwmB064
CsaV3_1G015260	Watermelon (97103) v2	cucwmbB008