CsaV3_1G013500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 8791040 .. 8791330 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCACTATGAAGATGGAGGTATATAATAATTTTCATTCCTCCATTTTTGTTTCGGTGGAGGTCTCGGAGATCCGGTGCTCTCGCGCTCGCATACCGGAACCGGACGTCAATCCCTTCTCACCATTTTTCGAGGGCCAGGGTTCTTCTTTCCCATCTCTCGTTCGGGTCCTCCTCCCGGTGCTTGTAGCCTTCTTCCCAATCCCAATCACTCCTTTTCATTTCTATGTATTTTGTTCTTTAACCGGATTTTTGGGATTTCCTTCTCCTCCTCCTACCTCCTGCTAA

mRNA sequence

ATGGAGGCCACTATGAAGATGGAGGTATATAATAATTTTCATTCCTCCATTTTTGTTTCGGTGGAGGTCTCGGAGATCCGGTGCTCTCGCGCTCGCATACCGGAACCGGACGTCAATCCCTTCTCACCATTTTTCGAGGGCCAGGGTTCTTCTTTCCCATCTCTCGTTCGGGTCCTCCTCCCGGTGCTTGTAGCCTTCTTCCCAATCCCAATCACTCCTTTTCATTTCTATGTATTTTGTTCTTTAACCGGATTTTTGGGATTTCCTTCTCCTCCTCCTACCTCCTGCTAA

Coding sequence (CDS)

ATGGAGGCCACTATGAAGATGGAGGTATATAATAATTTTCATTCCTCCATTTTTGTTTCGGTGGAGGTCTCGGAGATCCGGTGCTCTCGCGCTCGCATACCGGAACCGGACGTCAATCCCTTCTCACCATTTTTCGAGGGCCAGGGTTCTTCTTTCCCATCTCTCGTTCGGGTCCTCCTCCCGGTGCTTGTAGCCTTCTTCCCAATCCCAATCACTCCTTTTCATTTCTATGTATTTTGTTCTTTAACCGGATTTTTGGGATTTCCTTCTCCTCCTCCTACCTCCTGCTAA

Protein sequence

MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLLPVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC
Homology
[Close]
BLAST of CsaV3_1G013500 vs. NCBI nr
Match: KGN64804.1 (hypothetical protein Csa_1G108290 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 3.0e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60
          MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL
Sbjct: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60

Query: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 97
          PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC
Sbjct: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 96

[Close]
BLAST of CsaV3_1G013500 vs. TrEMBL
Match: tr|A0A0A0LUY9|A0A0A0LUY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108290 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60
          MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL
Sbjct: 1  MEATMKMEVYNNFHSSIFVSVEVSEIRCSRARIPEPDVNPFSPFFEGQGSSFPSLVRVLL 60

Query: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 97
          PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC
Sbjct: 61 PVLVAFFPIPITPFHFYVFCSLTGFLGFPSPPPTSC 96

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64804.13.0e-48100.00hypothetical protein Csa_1G108290 [Cucumis sativus][more]
BLAST of CsaV3_1G013500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUY9|A0A0A0LUY9_CUCSA2.0e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013500.1CsaV3_1G013500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013500CSPI01G13320Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013500Cucumber (Chinese Long) v3cuccucB021
CsaV3_1G013500Silver-seed gourdcarcucB0363
CsaV3_1G013500Silver-seed gourdcarcucB0474
CsaV3_1G013500Silver-seed gourdcarcucB1116
CsaV3_1G013500Cucumber (Gy14) v2cgybcucB002
CsaV3_1G013500Cucumber (Gy14) v1cgycucB453
CsaV3_1G013500Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013500Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013500Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013500Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013500Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013500Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013500Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G013500Bottle gourd (USVL1VR-Ls)cuclsiB054
CsaV3_1G013500Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013500Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G013500Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013500Watermelon (97103) v1cucwmB015
CsaV3_1G013500Watermelon (97103) v2cucwmbB032
CsaV3_1G013500Wax gourdcucwgoB017
CsaV3_1G013500Wax gourdcucwgoB051