CsaV3_1G013440 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G013440
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 8766706 .. 8766992 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGACAAATTCCATTCTTGTTTTGATTGTTTAAGTTGTTCCTCATTCTTGATACGGGGTAAGTGAATGAAATAAAAAAAAACCATACTCTCTCTTTGGCTTCTCCCTTTCTTTCTTTTTTTTTTTCCTCTTAATCTCAGTAACACACGAACTTTTTCTTGGTATCAGAGCTTCACGGACCGACGCCTCCAAGCATGATGGATTCCATCAACACTCCTTCCTCGACTCAAATTGAAACTGAACCCACTACCAACCAAGAAATTCAACTTGACCCGAATAGATATCAA

mRNA sequence

GCAGACAAATTCCATTCTTGTTTTGATTGTTTAAGTTGTTCCTCATTCTTGATACGGGAGCTTCACGGACCGACGCCTCCAAGCATGATGGATTCCATCAACACTCCTTCCTCGACTCAAATTGAAACTGAACCCACTACCAACCAAGAAATTCAACTTGACCCGAATAGATATCAA

Coding sequence (CDS)

GCAGACAAATTCCATTCTTGTTTTGATTGTTTAAGTTGTTCCTCATTCTTGATACGGGAGCTTCACGGACCGACGCCTCCAAGCATGATGGATTCCATCAACACTCCTTCCTCGACTCAAATTGAAACTGAACCCACTACCAACCAAGAAATTCAACTTGACCCGAATAGATATCAA

Protein sequence

ADKFHSCFDCLSCSSFLIRELHGPTPPSMMDSINTPSSTQIETEPTTNQEIQLDPNRYQ
BLAST of CsaV3_1G013440 vs. NCBI nr
Match: KGN64802.1 (hypothetical protein Csa_1G108275 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 30 MDSINTPSSTQIETEPTTNQEIQLDPNRYQ 60
          MDSINTPSSTQIETEPTTNQEIQLDPNRYQ
Sbjct: 1  MDSINTPSSTQIETEPTTNQEIQLDPNRYQ 30

BLAST of CsaV3_1G013440 vs. TrEMBL
Match: tr|A0A0A0LVF1|A0A0A0LVF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108275 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 30 MDSINTPSSTQIETEPTTNQEIQLDPNRYQ 60
          MDSINTPSSTQIETEPTTNQEIQLDPNRYQ
Sbjct: 1  MDSINTPSSTQIETEPTTNQEIQLDPNRYQ 30

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64802.11.3e-06100.00hypothetical protein Csa_1G108275 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LVF1|A0A0A0LVF1_CUCSA8.8e-07100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108275 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013440.1CsaV3_1G013440.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..59

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013440CsGy1G013400Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None