CsGy1G013400 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G013400
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 8771489 .. 8775647 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCACAACCCTAAGGTACAGCGACACGACGCCATGTCCGTTTGTCTTTCAATGCCGTGCTGCACCCCGAGACGGTCTCGACTATACGTCTTCATTTCACGTCGGTGCCATGTTTTAAGGGCCAATTTGGTCATTTTTGTCACTTTTACCTCTTCAACAACAACAAAAAAAAAAAAAAATAGTGAACCTGTGATTTGCCTGCAAGAAAATCAGCTCTGCCTAGCCAACCAAAAATTGACCCACATGCTTATATATATATATATAGTTAATTGTCAGAATAGGCTTCTCTTGAACAAAACTATTCTTCTTTCAATTGTGTTGAAGAAACAGAATAATAATGTGTTTGGCCAAGTTTGGTCCCTTCATCTGCATTTGCACCTGCACCTTATTCAACTTCTCTTTTCTTTCTCCACCAACATAGGAAAAGGGGTTTTTCTTTACTTTGAAATAACTTAATTAGCCCTTTAAATACTCTTTCATGAATATGAAGAACAAAAAGGTGAGAGAAAAAAAGGATCAATGATCAAAGGTGCTGGTGCATTTGCAGCTGAATGCCATCTTGGAAAACCCTATAACTTTAGGGCTTTACCTTTTCTTCTCCAACTTCTTATCAAAACCTACAAAATTGGATCCAACATATCACCAAACCCCCTCTTAATTATATTATTTCATTTTCTTCGTTTCTCTCTCAACTCTAGTTTTATTACTTGCTCATCTAAAATTCCATACCTTATCTTTTTACTCTCTAGATGTCTTTCCTTGGATTTCCTCTTTCGCAACAACAATAGTTCTCTCATCTCTCTCTGGATTCCTCTTTTGGAGATGACAACAACGACAGCGAGCAGAGATGTGTTGTGTTAGAAACGTATCAAGGTTTCAGATGCGAAAGTGATCAAGATCAACAAAAGGTTAGAACATTTTGTTTTGGAAAAGTCGGTCAAATTTCATTTTTTCAACTTTTTCCTTAGGTTACCCTTACAAAATTTTTAGGGATTTTTGTAAGGGTAACCTAAATTTTTTTATCTTTTCATCTGGGGGTTTATCAGATCTATATTTTTTTCTAACAGATATCTTTCTTTGTTAAGCTTTACCTAACGTGCAAATTCACCACAATTTTGATTTGCTATGGCTTCAGGTTAATATCCTAATTATAATCATCCTTTTTATATATATAAAAAAACATTTTGATTTTATTTTTTCAATGAAAACAGTGTTAAAGTTATTAATTAATAATTGAAAAAAATTCCTTTCCATAAGCCTTTTCTTCAATTTAGAAGCTTTCAACTACATATATACCATTTCTTCTTTCCATAAGCCTCCAAACCTTGTAACTTAACACCTAGTTAATAGATAAGGCCTCTCATTATAGGATTATCCTAGTTTGAAAGATTCGGTTTCTTCTTCTTCAAAAAAAAAAAAAAAAAAACTACATATATACGATCCATTTTTTCTTGTCTAATTTGGGAGAGATTTAGAAGGTATAAGTGAAGATTAATATCTTAAAAATATATATTGTAGAAAGTGAGGAAGAAATTAAATCTTCAACATTCTGTTTGTTTGTTTGAATAATCAGAAATTTTTTTTTGTGTGTATCTGTATTGCAAATTTTCTAAGAGAATCTAAGGTGAGGAGACTGGAATTTTGTTTTTCATATTGATTTGTTGACAGATTTATGTTGCATTTCTTTCCACCCTATAGTTTGGGATGGTATTTTGGAAGTCTTTTTATTTTCAAAATTAACTCTCATAGACACTACTTTTATTTACCTCTGACATTCTCTTCTGTTATCCACTTTTCACCCATATTTAAAATAAAATGTCAAATTTTGAAAGAAAAAAAACTGTCATTATTTTTAAAATTTGACTAAATAATTCAAATCAAATCAAGAATTTCTTATTCAGGCAATGAAAATTATTTATTATCGAATTTAGGAGAACATCATGAAAGTAAAAACAAAATGGTTACAAAATCGATGTCTTACTTTTTTTCTTCTAAAAATTCAGCTTAATTATAAACAATATTTTCATATGTTGTTTTCTATCTTTTTTTAAAAAAATCTAAGGTTTTAACATAAACACTTAAAAAATGAAATAATGGTTATTATTGTCTATGGAAAAATCTAGCCAAGGAAACTCACCTACTTTCACTTGCCATCGATCGTGAATTTGTGTATATTGAAGAAGAACAAGTTACTACAAGAATTAGAATAGGATACACTGATGTAGTGCTTGGCACATAACATTTCTATGCGTAAGTTAGTTTTTCAATGTTTGAATTGGAGCAAACTTTTAGGAAAGAAGATGAACTTACAACATAGAGTTATCATGTTTTTTATATAAAAGAGTTAAATATAGGGTTTCGTGAATGCTTTTGCAAACAGAACTCTATAATATTAAAGCCAGCTTGCATAGGGGGAACTAGCTAGGGGTTGGTTGGCCTCAGCCTCTAAAGTCAAGCAGACCTTTGTGGGCAAATAACCAGCCTAAAAATTTTATTTGATTATAGTTTGTTATTTATAGTGTTTAAGAAGTTTAATTTTCTCTTAGTTAGATCTAAAGAATGTTAGTATAGTTTTCTTCTAAAACATATTTTCTATCCATGTCAGCCTATCATCTGTTATGCCATATATCCAAAGAAAACAAATAGATTTTGTAACTTCTTTTTAAAAAGATTTAACAAAAAATTGTAAGGACTATTGAATTTTGAAATTGATTAATAAAAAAATTTAAGCATTAGATTTGTAAGGCTCTACTGCCATGTCAACATGCCAACAGAAGCAAACCTTCAATCATTTTATCTTCACCCTTGGTTTTCCCACCACAAGTATAAATACACCAATATCTCCAGCTATCTGTTAAAGTAGTATTTGCTGATTATTATTACGATTTGTTCTTTAGTGTAATAATTTATCTTATTGGTTACTGTTTTCCTCTTTATTATTTTTGTATTAAGGAAAGATGTTCGTATCTAATCATCCCTTATATCATGAAGGTTAGGCAGACAAATTCCATTCTTGTTTTGATTGTTTAAGTTGTTCCTCATTCTTGATACGGGGTAAGTGAATGAAATAAAAAAAAACCATACTCTCTCTTTGGCTTCTCCCTTTCTTTCTTTTTTTTTTCCTCTTAATCTCAGTAACACACGAACTTTTTCTTGGTATCAGAGCTTCACGGACCGACGCCTCCAAGCATGATGGATCCCATCAACACTCCTTCCTCGACTCAAATTGAAACTGAACCCACTACCAACCAAGAAATTCAACTTGACCCGAATAGATATCAAGTTTGGTCTGGTACTATGCCAGTCGGAACTCTAGAATTCACCAATCTTTTAAACCAATTCAAAACCACCAAGCTCGACAAGGGAAACTTCTCTTTCTGAAAAAGCATTGCATTGTCCATTCTAAGAAGCCACAAGCTTGAGGGCCATCTGATGGGGAAAACAACATCCTTAGAGCAATGAATTATTATACCTCCATGCGAAGATGAACCTATGGTACTTCTTCGTAATCCTGAATATGACATCTGGTTGGCTGCTGACTAACTCCTTGTAGGGTGGTTATACAATTCGATGATCCCTGGCACCATTGCTACTCAGGTCAAGGGAAAAGATGAAGTTAAGATTTTGTGGGACTCGATCTAACAATACTTTTGGAATTCACTCAAGATTTCAAGAGAACTTCAACTGTCATGTTGCAGAGAACAAGGAAAGTCAACTCCAAAATGGAAGACTATGTGTCTACAATGAAAGGTTACTTCGATAGCCTACAAATGGCTGGTTATCCCATGGATATGCACATTCACATCATAATTACCCCATCCATGTTTGTTTGCTCGATAAAAGCATGTATGGCCTTAAACCTGCACCATGTGTGCATGGTATGATCGTTTTGCCGCAAACTTATTAACTCTTGTTAGAAATTAATAAGTTCCTAGATACATTTCTAATTTCAAGATACATGTAATTATTCAAGTACATGAATGATATGTATGCATGTACTTTATTTATTTCATTGTTCAAATACATGAATGATATGTACATGTACTTTATTTATTTTTTGTCTTTTAAGAAGTATCTCTTCTACTATATAAAGAGTTCACTTCTTTTATTTGTATCCGAGAGAAAAGAATCAAATAAATTAGAAAATATTGAAG

mRNA sequence

ATGGACGCCACAACCCTAAGGTACAGCGACACGACGCCATGTCCGTTTGTCTTTCAATGCCGTGCTGCACCCCGAGACGGTCTCGACTATACGTCTTCATTTCACAATAGGCTTCTCTTGAACAAAACTATTCTTCTTTCAATTGTGTTGAAGAAACAGAATAATAATTTCTCTCATCTCTCTCTGGATTCCTCTTTTGGAGATGACAACAACGACAGCGAGCAGAGATGTGTTGTGTTAGAAACGTATCAAGGTTTCAGATGCGAAAGTGATCAAGATCAACAAAAGGCAGACAAATTCCATTCTTGTTTTGATTGTTTAAGTTGTTCCTCATTCTTGATACGGGAGCTTCACGGACCGACGCCTCCAAGCATGATGGATCCCATCAACACTCCTTCCTCGACTCAAATTGAAACTGAACCCACTACCAACCAAGAAATTCAACTTGACCCGAATAGATATCAAGTTTGGTCTGGTACTATGCCAGTCGGAACTCTAGAATTCACCAATCTTTTAAACCAATTCAAAACCACCAAGCTCGACAAGGGAAACTTCTCTTTCTGAAAAAGCATTGCATTGTCCATTCTAAGAAGCCACAAGCTTGAGGGCCATCTGATGGGGAAAACAACATCCTTAGAGCAATGAATTATTATACCTCCATGCGAAGATGAACCTATGGTACTTCTTCGTAATCCTGAATATGACATCTGGTTGGCTGCTGACTAACTCCTTGTAGGGTGGTTATACAATTCGATGATCCCTGGCACCATTGCTACTCAGGTCAAGGGAAAAGATGAAGTTAAGATTTTGTGGGACTCGATCTAACAATACTTTTGGAATTCACTCAAGATTTCAAGAGAACTTCAACTGTCATGTTGCAGAGAACAAGGAAAGTCAACTCCAAAATGGAAGACTATGTGTCTACAATGAAAGGTTACTTCGATAGCCTACAAATGGCTGGTTATCCCATGGATATGCACATTCACATCATAATTACCCCATCCATGTTTGTTTGCTCGATAAAAGCATGTATGGCCTTAAACCTGCACCATGTGTGCATGGTATGATCGTTTTGCCGCAAACTTATTAACTCTTGTTAGAAATTAATAAGTTCCTAGATACATTTCTAATTTCAAGATACATGTAATTATTCAAGTACATGAATGATATGTATGCATGTACTTTATTTATTTCATTGTTCAAATACATGAATGATATGTACATGTACTTTATTTATTTTTTGTCTTTTAAGAAGTATCTCTTCTACTATATAAAGAGTTCACTTCTTTTATTTGTATCCGAGAGAAAAGAATCAAATAAATTAGAAAATATTGAAG

Coding sequence (CDS)

ATGGACGCCACAACCCTAAGGTACAGCGACACGACGCCATGTCCGTTTGTCTTTCAATGCCGTGCTGCACCCCGAGACGGTCTCGACTATACGTCTTCATTTCACAATAGGCTTCTCTTGAACAAAACTATTCTTCTTTCAATTGTGTTGAAGAAACAGAATAATAATTTCTCTCATCTCTCTCTGGATTCCTCTTTTGGAGATGACAACAACGACAGCGAGCAGAGATGTGTTGTGTTAGAAACGTATCAAGGTTTCAGATGCGAAAGTGATCAAGATCAACAAAAGGCAGACAAATTCCATTCTTGTTTTGATTGTTTAAGTTGTTCCTCATTCTTGATACGGGAGCTTCACGGACCGACGCCTCCAAGCATGATGGATCCCATCAACACTCCTTCCTCGACTCAAATTGAAACTGAACCCACTACCAACCAAGAAATTCAACTTGACCCGAATAGATATCAAGTTTGGTCTGGTACTATGCCAGTCGGAACTCTAGAATTCACCAATCTTTTAAACCAATTCAAAACCACCAAGCTCGACAAGGGAAACTTCTCTTTCTGA

Protein sequence

MDATTLRYSDTTPCPFVFQCRAAPRDGLDYTSSFHNRLLLNKTILLSIVLKKQNNNFSHLSLDSSFGDDNNDSEQRCVVLETYQGFRCESDQDQQKADKFHSCFDCLSCSSFLIRELHGPTPPSMMDPINTPSSTQIETEPTTNQEIQLDPNRYQVWSGTMPVGTLEFTNLLNQFKTTKLDKGNFSF
Homology
[Close]
BLAST of CsGy1G013400 vs. NCBI nr
Match: KGN64802.1 (hypothetical protein Csa_1G108275 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 5.3e-25
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 126 MDPINTPSSTQIETEPTTNQEIQLDPNRYQVWSGTMPVGTLEFTNLLNQFKTTKLDKGNF 185
           MD INTPSSTQIETEPTTNQEIQLDPNRYQVWSGTMPVGTLEFTNLLNQ KTTKLDKGNF
Sbjct: 1   MDSINTPSSTQIETEPTTNQEIQLDPNRYQVWSGTMPVGTLEFTNLLNQVKTTKLDKGNF 60

Query: 186 SF 188
           SF
Sbjct: 61  SF 62

[Close]
BLAST of CsGy1G013400 vs. TrEMBL
Match: tr|A0A0A0LVF1|A0A0A0LVF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108275 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-25
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 126 MDPINTPSSTQIETEPTTNQEIQLDPNRYQVWSGTMPVGTLEFTNLLNQFKTTKLDKGNF 185
           MD INTPSSTQIETEPTTNQEIQLDPNRYQVWSGTMPVGTLEFTNLLNQ KTTKLDKGNF
Sbjct: 1   MDSINTPSSTQIETEPTTNQEIQLDPNRYQVWSGTMPVGTLEFTNLLNQVKTTKLDKGNF 60

Query: 186 SF 188
           SF
Sbjct: 61  SF 62

The following BLAST results are available for this feature:
BLAST of CsGy1G013400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64802.15.3e-2596.77hypothetical protein Csa_1G108275 [Cucumis sativus][more]
BLAST of CsGy1G013400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G013400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G013400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVF1|A0A0A0LVF1_CUCSA3.5e-2596.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G108275 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G013400.1CsGy1G013400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G013400CsaV3_1G013440Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G013400Watermelon (97103) v2cgybwmbB034
CsGy1G013400Wax gourdcgybwgoB015
CsGy1G013400Wax gourdcgybwgoB046
CsGy1G013400Cucumber (Gy14) v2cgybcgybB017
CsGy1G013400Cucurbita maxima (Rimu)cgybcmaB061
CsGy1G013400Cucurbita maxima (Rimu)cgybcmaB110
CsGy1G013400Cucurbita moschata (Rifu)cgybcmoB057
CsGy1G013400Cucurbita moschata (Rifu)cgybcmoB104
CsGy1G013400Cucurbita pepo (Zucchini)cgybcpeB082
CsGy1G013400Cucurbita pepo (Zucchini)cgybcpeB090
CsGy1G013400Cucumber (Chinese Long) v2cgybcuB001
CsGy1G013400Bottle gourd (USVL1VR-Ls)cgyblsiB041
CsGy1G013400Melon (DHL92) v3.5.1cgybmeB010
CsGy1G013400Melon (DHL92) v3.6.1cgybmedB009
CsGy1G013400Watermelon (Charleston Gray)cgybwcgB035
CsGy1G013400Watermelon (97103) v1cgybwmB012
CsGy1G013400Wild cucumber (PI 183967)cgybcpiB001
CsGy1G013400Silver-seed gourdcarcgybB0342
CsGy1G013400Silver-seed gourdcarcgybB0449
CsGy1G013400Silver-seed gourdcarcgybB1051