CsaV3_1G012880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G012880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 8144761 .. 8145282 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTGTGCCACTTCATCCTCGAGCTCTAATAGGGTGCAAGGGCATTGGAAGCCTCTTAGGAAGGCCAATTAGGTCCCTCCAAAGGCGAAAATTTGCCTCTGGAAGCTTTTAAATGATGTTATTCCCTCTAAGCTTAACCTCTTGAAGATTATTAACAATCCACTTTGTTTTTTTGTAGGGATTGTGAGGAATCGGCTTTGCATATTTTGTGGGGATGCAAGTTTGCTAGAAGAGTCTGGAGGTTATCCCATTCTGCTTTGGGACTGAGCTGTGGAAAATTTAAGTGAGGAAGAGATTAATGTGAGCATTTTAATTTGGTGGGGTCTCTGGTCTTGCAGAAATAATTGGGTGGAATTTTTTTTTACGGCAGAGTCGTCTGTTGGTGTCGAGCTTGCTTTGAAAATTCATTGACAGGACTATCCAAGAATCCATGGCAATTGTCTCGAGCTCCCTTGATTTGGCGCCTAAGAAGGAGTTGAGAGTCTCAACACTTGGAAGCAGCTTAAGAATGGCTTGA

mRNA sequence

ATGAAGCTTGTGCCACTTCATCCTCGAGCTCTAATAGGGTGCAAGGGCATTGGAAGCCTCTTAGGAAGGCCAATTAGGGATTGTGAGGAATCGGCTTTGCATATTTTGTGGGGATGCAAGTTTGCTAGAAGAGTCTGGAGGTTATCCCATTCTGCTTTGGGACTGAGCTGTGGAAAATTTAAGACTATCCAAGAATCCATGGCAATTGTCTCGAGCTCCCTTGATTTGGCGCCTAAGAAGGAGTTGAGAGTCTCAACACTTGGAAGCAGCTTAAGAATGGCTTGA

Coding sequence (CDS)

ATGAAGCTTGTGCCACTTCATCCTCGAGCTCTAATAGGGTGCAAGGGCATTGGAAGCCTCTTAGGAAGGCCAATTAGGGATTGTGAGGAATCGGCTTTGCATATTTTGTGGGGATGCAAGTTTGCTAGAAGAGTCTGGAGGTTATCCCATTCTGCTTTGGGACTGAGCTGTGGAAAATTTAAGACTATCCAAGAATCCATGGCAATTGTCTCGAGCTCCCTTGATTTGGCGCCTAAGAAGGAGTTGAGAGTCTCAACACTTGGAAGCAGCTTAAGAATGGCTTGA

Protein sequence

MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKFKTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA
Homology
[Close]
BLAST of CsaV3_1G012880 vs. NCBI nr
Match: KGN64736.1 (hypothetical protein Csa_1G084840 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF 60
          MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF
Sbjct: 1  MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF 60

Query: 61 KTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA 95
          KTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA
Sbjct: 61 KTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA 94

[Close]
BLAST of CsaV3_1G012880 vs. TrEMBL
Match: tr|A0A0A0LXK5|A0A0A0LXK5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084840 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.1e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF 60
          MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF
Sbjct: 1  MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF 60

Query: 61 KTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA 95
          KTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA
Sbjct: 61 KTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA 94

The following BLAST results are available for this feature:
BLAST of CsaV3_1G012880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64736.11.4e-45100.00hypothetical protein Csa_1G084840 [Cucumis sativus][more]
BLAST of CsaV3_1G012880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXK5|A0A0A0LXK5_CUCSA9.1e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084840 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G012880.1CsaV3_1G012880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G012880CsGy1G012730Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G012880Cucumber (Chinese Long) v3cuccucB055
CsaV3_1G012880Silver-seed gourdcarcucB0474
CsaV3_1G012880Silver-seed gourdcarcucB0764
CsaV3_1G012880Cucumber (Gy14) v2cgybcucB256
CsaV3_1G012880Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G012880Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G012880Cucurbita maxima (Rimu)cmacucB0649
CsaV3_1G012880Cucurbita maxima (Rimu)cmacucB0693
CsaV3_1G012880Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G012880Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G012880Cucurbita moschata (Rifu)cmocucB0634
CsaV3_1G012880Cucurbita moschata (Rifu)cmocucB0678
CsaV3_1G012880Cucurbita pepo (Zucchini)cpecucB0332
CsaV3_1G012880Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G012880Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G012880Wild cucumber (PI 183967)cpicucB001
CsaV3_1G012880Wild cucumber (PI 183967)cpicucB320
CsaV3_1G012880Bottle gourd (USVL1VR-Ls)cuclsiB002
CsaV3_1G012880Bottle gourd (USVL1VR-Ls)cuclsiB025
CsaV3_1G012880Melon (DHL92) v3.5.1cucmeB009
CsaV3_1G012880Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G012880Melon (DHL92) v3.6.1cucmedB008
CsaV3_1G012880Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G012880Watermelon (Charleston Gray)cucwcgB035
CsaV3_1G012880Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G012880Watermelon (97103) v1cucwmB015
CsaV3_1G012880Watermelon (97103) v1cucwmB080
CsaV3_1G012880Watermelon (97103) v2cucwmbB028
CsaV3_1G012880Watermelon (97103) v2cucwmbB032
CsaV3_1G012880Wax gourdcucwgoB022
CsaV3_1G012880Wax gourdcucwgoB040