CsaV3_1G012250 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G012250
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr1 : 7598121 .. 7598429 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAGAAATCAGAAGGTCTCCTAGCAAATGTCAAAAAGAAAGGTTTTGCATTTAATGTCTACCTCAAACTATATGCCAGAAATGGAAAGAAAGACGAGATACACCTTATATGGAATCTCTACAAGAAAGAGAAAATCTTCAACAAAGGTTTCATCAGCATGATAACATCACTTTTTGTATTAGACGATATCAAAGGTGCGGAGCGTATTTACAAGGAATGGGAGACCCAGAAACTGTCATACGACTTGCGGATTCCAAACTTGTTGGTTGATGCGTATTGTAGAGCTGGTCTAATGGAGAGCTGA

mRNA sequence

ATGCTGAAGAAATCAGAAGGTCTCCTAGCAAATGTCAAAAAGAAAGGTTTTGCATTTAATGTCTACCTCAAACTATATGCCAGAAATGGAAAGAAAGACGAGATACACCTTATATGGAATCTCTACAAGAAAGAGAAAATCTTCAACAAAGGTTTCATCAGCATGATAACATCACTTTTTGTATTAGACGATATCAAAGGTGCGGAGCGTATTTACAAGGAATGGGAGACCCAGAAACTGTCATACGACTTGCGGATTCCAAACTTGTTGGTTGATGCGTATTGTAGAGCTGGTCTAATGGAGAGCTGA

Coding sequence (CDS)

ATGCTGAAGAAATCAGAAGGTCTCCTAGCAAATGTCAAAAAGAAAGGTTTTGCATTTAATGTCTACCTCAAACTATATGCCAGAAATGGAAAGAAAGACGAGATACACCTTATATGGAATCTCTACAAGAAAGAGAAAATCTTCAACAAAGGTTTCATCAGCATGATAACATCACTTTTTGTATTAGACGATATCAAAGGTGCGGAGCGTATTTACAAGGAATGGGAGACCCAGAAACTGTCATACGACTTGCGGATTCCAAACTTGTTGGTTGATGCGTATTGTAGAGCTGGTCTAATGGAGAGCTGA

Protein sequence

MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMES

Homology

[Close]

BLAST of CsaV3_1G012250 vs. NCBI nr
Match: XP_011653151.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 6.9e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 60
           MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF
Sbjct: 255 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 314

Query: 61  VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMES 103
           VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMES
Sbjct: 315 VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMES 356

[Close]

BLAST of CsaV3_1G012250 vs. NCBI nr
Match: XP_011653157.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus] >KGN64672.1 hypothetical protein Csa_1G073790 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 3.8e-49
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 60
           MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIH IWNLYKKEKIFNKGFISMITSLF
Sbjct: 258 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKEKIFNKGFISMITSLF 317

Query: 61  VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           VLDDIKGAERIYKEWET+KLSYDLRIPNLLVDAYCRAGLME
Sbjct: 318 VLDDIKGAERIYKEWETRKLSYDLRIPNLLVDAYCRAGLME 358

[Close]

BLAST of CsaV3_1G012250 vs. NCBI nr
Match: KGN64673.1 (hypothetical protein Csa_1G073800 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 7.2e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 60
           MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF
Sbjct: 142 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 201

Query: 61  VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRA 98
           VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRA
Sbjct: 202 VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRA 238

[Close]

BLAST of CsaV3_1G012250 vs. NCBI nr
Match: XP_008442434.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 5.3e-43
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 60
           MLKKSEG LA  KKKG AFNVYLKLYARNGKKDE+H IWNLYKKEKIFNKGFISMI SL 
Sbjct: 258 MLKKSEGRLATDKKKGHAFNVYLKLYARNGKKDEVHRIWNLYKKEKIFNKGFISMIRSLL 317

Query: 61  VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           +LDDI+GAE IYKEWETQKLSYD+RIPNLLVDAYCRAGL+E
Sbjct: 318 ILDDIRGAEDIYKEWETQKLSYDVRIPNLLVDAYCRAGLIE 358

[Close]

BLAST of CsaV3_1G012250 vs. NCBI nr
Match: XP_008442448.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 6.3e-36
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MLKKSEGLLA-NVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSL 60
           MLKKSE LLA   + K  AFN+YL LYA+NGKKDE + IWNLYKKEK+FNKGFISMITSL
Sbjct: 258 MLKKSEELLAKTAENKCHAFNIYLTLYAKNGKKDETYRIWNLYKKEKVFNKGFISMITSL 317

Query: 61  FVLDDIKGAERIYKE-----WETQKLSYDLRIPNLLVDAYCRAGLME 102
            +LDDIKGA RI +E     WETQKLSYDLRIPNLLVDAYCRAGLME
Sbjct: 318 LILDDIKGARRICEEWETQVWETQKLSYDLRIPNLLVDAYCRAGLME 364

[Close]

BLAST of CsaV3_1G012250 vs. TAIR10
Match: AT2G20710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 43/102 (42.16%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSL 60
           ML+KSE ++ N +K+  A+ V +  Y   GKK+E++ +W+LYK+ +  +N G+IS+I++L
Sbjct: 267 MLRKSEQMV-NAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISAL 326

Query: 61  FVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
             +DDI+  E+I +EWE     +D+RIP+LL+  YC+ G+ME
Sbjct: 327 LKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMME 367

[Close]

BLAST of CsaV3_1G012250 vs. TAIR10
Match: AT1G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-14
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 3   KKSEGLLANVK-----KKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISM 62
           +K+E  L  V+     +    ++  L LY   G K E++ +W++YK     I N G+ ++
Sbjct: 292 EKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHAL 351

Query: 63  ITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMES 103
           ++SL  + DI+GAE++Y+EW   K SYD RIPNLL++AY +   +E+
Sbjct: 352 VSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLET 398

[Close]

BLAST of CsaV3_1G012250 vs. TAIR10
Match: AT1G28020.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 8.2e-14
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKE--KIFNKGFISMITS 60
           ML+ +E L+     K  A++  +KLY   G ++E+  +W LYK +  +  N G+ ++I S
Sbjct: 266 MLRLTEQLVDQKSLKS-AYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRS 325

Query: 61  LFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           L  +DDI GAE IYK WE+  L +D RIP +L   Y   G+ E
Sbjct: 326 LLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTE 367

[Close]

BLAST of CsaV3_1G012250 vs. TAIR10
Match: AT1G60770.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 9   LANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIK 68
           + N ++   A+   + LY R GK  E++ IW   +    K  N  +++MI  L  L+D+ 
Sbjct: 257 MKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLP 316

Query: 69  GAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           GAE ++KEW+    +YD+RI N+L+ AY + GL++
Sbjct: 317 GAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQ 351

[Close]

BLAST of CsaV3_1G012250 vs. TAIR10
Match: AT4G21705.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-11
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITS 60
           +LK SE  L   KK G  +N  + LYAR GKK E+  +W+L K   ++  N+ +++++ S
Sbjct: 254 LLKMSENRLE--KKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQS 313

Query: 61  LFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           L  +D +  AE +  EW++    YD R+PN ++  Y    + E
Sbjct: 314 LVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEE 354

[Close]

BLAST of CsaV3_1G012250 vs. Swiss-Prot
Match: sp|Q9SKU6|PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-19
Identity = 43/102 (42.16%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSL 60
           ML+KSE ++ N +K+  A+ V +  Y   GKK+E++ +W+LYK+ +  +N G+IS+I++L
Sbjct: 267 MLRKSEQMV-NAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISAL 326

Query: 61  FVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
             +DDI+  E+I +EWE     +D+RIP+LL+  YC+ G+ME
Sbjct: 327 LKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMME 367

[Close]

BLAST of CsaV3_1G012250 vs. Swiss-Prot
Match: sp|Q8LPS6|PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX=3702 GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-13
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 3   KKSEGLLANVK-----KKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISM 62
           +K+E  L  V+     +    ++  L LY   G K E++ +W++YK     I N G+ ++
Sbjct: 292 EKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHAL 351

Query: 63  ITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMES 103
           ++SL  + DI+GAE++Y+EW   K SYD RIPNLL++AY +   +E+
Sbjct: 352 VSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLET 398

[Close]

BLAST of CsaV3_1G012250 vs. Swiss-Prot
Match: sp|Q9C7F1|PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana OX=3702 GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKE--KIFNKGFISMITS 60
           ML+ +E L+     K  A++  +KLY   G ++E+  +W LYK +  +  N G+ ++I S
Sbjct: 266 MLRLTEQLVDQKSLKS-AYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRS 325

Query: 61  LFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           L  +DDI GAE IYK WE+  L +D RIP +L   Y   G+ E
Sbjct: 326 LLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTE 367

[Close]

BLAST of CsaV3_1G012250 vs. Swiss-Prot
Match: sp|O22714|PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX=3702 GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-11
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 9   LANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIK 68
           + N ++   A+   + LY R GK  E++ IW   +    K  N  +++MI  L  L+D+ 
Sbjct: 257 MKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLP 316

Query: 69  GAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           GAE ++KEW+    +YD+RI N+L+ AY + GL++
Sbjct: 317 GAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQ 351

[Close]

BLAST of CsaV3_1G012250 vs. Swiss-Prot
Match: sp|Q84JR3|PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-10
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITS 60
           +LK SE  L   KK G  +N  + LYAR GKK E+  +W+L K   ++  N+ +++++ S
Sbjct: 254 LLKMSENRLE--KKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQS 313

Query: 61  LFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           L  +D +  AE +  EW++    YD R+PN ++  Y    + E
Sbjct: 314 LVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEE 354

[Close]

BLAST of CsaV3_1G012250 vs. TrEMBL
Match: tr|A0A0A0LV44|A0A0A0LV44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-49
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 60
           MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIH IWNLYKKEKIFNKGFISMITSLF
Sbjct: 258 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKEKIFNKGFISMITSLF 317

Query: 61  VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           VLDDIKGAERIYKEWET+KLSYDLRIPNLLVDAYCRAGLME
Sbjct: 318 VLDDIKGAERIYKEWETRKLSYDLRIPNLLVDAYCRAGLME 358

[Close]

BLAST of CsaV3_1G012250 vs. TrEMBL
Match: tr|A0A0A0LSC2|A0A0A0LSC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.7e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 60
           MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF
Sbjct: 142 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 201

Query: 61  VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRA 98
           VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRA
Sbjct: 202 VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRA 238

[Close]

BLAST of CsaV3_1G012250 vs. TrEMBL
Match: tr|A0A1S3B572|A0A1S3B572_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486303 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.5e-43
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLF 60
           MLKKSEG LA  KKKG AFNVYLKLYARNGKKDE+H IWNLYKKEKIFNKGFISMI SL 
Sbjct: 258 MLKKSEGRLATDKKKGHAFNVYLKLYARNGKKDEVHRIWNLYKKEKIFNKGFISMIRSLL 317

Query: 61  VLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME 102
           +LDDI+GAE IYKEWETQKLSYD+RIPNLLVDAYCRAGL+E
Sbjct: 318 ILDDIRGAEDIYKEWETQKLSYDVRIPNLLVDAYCRAGLIE 358

[Close]

BLAST of CsaV3_1G012250 vs. TrEMBL
Match: tr|A0A1S3B6G4|A0A1S3B6G4_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486307 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.2e-36
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MLKKSEGLLA-NVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSL 60
           MLKKSE LLA   + K  AFN+YL LYA+NGKKDE + IWNLYKKEK+FNKGFISMITSL
Sbjct: 258 MLKKSEELLAKTAENKCHAFNIYLTLYAKNGKKDETYRIWNLYKKEKVFNKGFISMITSL 317

Query: 61  FVLDDIKGAERIYKE-----WETQKLSYDLRIPNLLVDAYCRAGLME 102
            +LDDIKGA RI +E     WETQKLSYDLRIPNLLVDAYCRAGLME
Sbjct: 318 LILDDIKGARRICEEWETQVWETQKLSYDLRIPNLLVDAYCRAGLME 364

[Close]

BLAST of CsaV3_1G012250 vs. TrEMBL
Match: tr|A0A2N9I6A5|A0A2N9I6A5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47431 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.6e-30
Identity = 65/101 (64.36%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYK-KEKIFNKGFISMITSL 60
           M+KKSEGL+ N KKK FAF++ LK YA  GKKDE++ IW LYK KEKI+NKG+ISMI+SL
Sbjct: 260 MVKKSEGLIDNAKKKNFAFDLLLKQYAEIGKKDELYRIWKLYKEKEKIYNKGYISMISSL 319

Query: 61  FVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM 101
              DDI+GAE I++EWE++KLSYD R+PNLL++AY + GL+
Sbjct: 320 LAFDDIEGAENIFEEWESRKLSYDFRVPNLLINAYGQKGLL 360

The following BLAST results are available for this feature:

BLAST of CsaV3_1G012250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653151.1	6.9e-51	100.00	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g...	[more]
XP_011653157.1	3.8e-49	98.02	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
KGN64673.1	7.2e-48	100.00	hypothetical protein Csa_1G073800 [Cucumis sativus]	[more]
XP_008442434.1	5.3e-43	87.13	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_008442448.1	6.3e-36	76.64	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]

BLAST of CsaV3_1G012250 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20710.1	1.5e-20	42.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02150.1	2.8e-14	36.45	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G28020.1	8.2e-14	38.83	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G60770.1	1.6e-12	34.74	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21705.1	5.0e-11	33.98	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_1G012250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SKU6\|PP166_ARATH	2.8e-19	42.16	Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidop...	[more]
sp\|Q8LPS6\|PPR3_ARATH	5.1e-13	36.45	Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9C7F1\|PPR61_ARATH	1.5e-12	38.83	Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis th...	[more]
sp\|O22714\|PPR86_ARATH	2.8e-11	34.74	Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX...	[more]
sp\|Q84JR3\|PP334_ARATH	9.0e-10	33.98	Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidop...	[more]

BLAST of CsaV3_1G012250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV44\|A0A0A0LV44_CUCSA	2.5e-49	98.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1	[more]
tr\|A0A0A0LSC2\|A0A0A0LSC2_CUCSA	4.7e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1	[more]
tr\|A0A1S3B572\|A0A1S3B572_CUCME	3.5e-43	87.13	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A1S3B6G4\|A0A1S3B6G4_CUCME	4.2e-36	76.64	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A2N9I6A5\|A0A2N9I6A5_FAGSY	7.6e-30	64.36	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47431 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G012250.1	CsaV3_1G012250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..102 e-value: 5.7E-8 score: 34.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 88..101 e-value: 0.24 score: 11.6
None	No IPR available	PANTHER	PTHR24015:SF1625	SUBFAMILY NOT NAMED	coord: 2..101
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 2..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G012250	Cla97C03G057300	Watermelon (97103) v2	cucwmbB030
CsaV3_1G012250	Bhi08G001276	Wax gourd	cucwgoB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G012250	Wax gourd	cucwgoB026
CsaV3_1G012250	Wax gourd	cucwgoB080
CsaV3_1G012250	Cucumber (Chinese Long) v3	cuccucB030
CsaV3_1G012250	Cucumber (Chinese Long) v3	cuccucB044
CsaV3_1G012250	Silver-seed gourd	carcucB0170
CsaV3_1G012250	Silver-seed gourd	carcucB0193
CsaV3_1G012250	Silver-seed gourd	carcucB0582
CsaV3_1G012250	Silver-seed gourd	carcucB0672
CsaV3_1G012250	Silver-seed gourd	carcucB0991
CsaV3_1G012250	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G012250	Cucumber (Gy14) v2	cgybcucB248
CsaV3_1G012250	Cucumber (Gy14) v1	cgycucB018
CsaV3_1G012250	Cucumber (Gy14) v1	cgycucB165
CsaV3_1G012250	Cucumber (Gy14) v1	cgycucB174
CsaV3_1G012250	Cucurbita maxima (Rimu)	cmacucB0011
CsaV3_1G012250	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G012250	Cucurbita maxima (Rimu)	cmacucB0465
CsaV3_1G012250	Cucurbita maxima (Rimu)	cmacucB0515
CsaV3_1G012250	Cucurbita maxima (Rimu)	cmacucB0774
CsaV3_1G012250	Cucurbita maxima (Rimu)	cmacucB1005
CsaV3_1G012250	Cucurbita moschata (Rifu)	cmocucB0000
CsaV3_1G012250	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G012250	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G012250	Cucurbita moschata (Rifu)	cmocucB0503
CsaV3_1G012250	Cucurbita moschata (Rifu)	cmocucB0759
CsaV3_1G012250	Cucurbita moschata (Rifu)	cmocucB0989
CsaV3_1G012250	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G012250	Cucurbita pepo (Zucchini)	cpecucB0060
CsaV3_1G012250	Cucurbita pepo (Zucchini)	cpecucB0585
CsaV3_1G012250	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G012250	Cucurbita pepo (Zucchini)	cpecucB0668
CsaV3_1G012250	Cucurbita pepo (Zucchini)	cpecucB0812
CsaV3_1G012250	Cucurbita pepo (Zucchini)	cpecucB0953
CsaV3_1G012250	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G012250	Wild cucumber (PI 183967)	cpicucB202
CsaV3_1G012250	Wild cucumber (PI 183967)	cpicucB310
CsaV3_1G012250	Bottle gourd (USVL1VR-Ls)	cuclsiB020
CsaV3_1G012250	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G012250	Bottle gourd (USVL1VR-Ls)	cuclsiB056
CsaV3_1G012250	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G012250	Melon (DHL92) v3.5.1	cucmeB092
CsaV3_1G012250	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G012250	Melon (DHL92) v3.6.1	cucmedB085
CsaV3_1G012250	Watermelon (Charleston Gray)	cucwcgB012
CsaV3_1G012250	Watermelon (Charleston Gray)	cucwcgB015
CsaV3_1G012250	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G012250	Watermelon (97103) v1	cucwmB013
CsaV3_1G012250	Watermelon (97103) v1	cucwmB050
CsaV3_1G012250	Watermelon (97103) v1	cucwmB088
CsaV3_1G012250	Watermelon (97103) v2	cucwmbB001
CsaV3_1G012250	Watermelon (97103) v2	cucwmbB022