CsaV3_1G012240 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G012240
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein, mitochondrial
Location	chr1 : 7596650 .. 7598032 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCTTACAATCTCTAAAACCAATTAATTTGATTGCATTCCGGAGAGAATTCGTGAATTTCTACTCTACAGTTGTGAAGGATAGCCTTTACAGAAGGATTTCTCCGGTGGGTGACCCTAATATCTCTGTAACTCCACTTCTTGATCAGTGGGTGTTAGAAAGCGGGCTTGTTCAGCAAGACGAACTTCGGCATATCATCAAGGAGCTTAGGGTTTACAAGCGGTTCAAACATGCTCTTGAGGTTTGATTTCTTATTCATATCTTCGTCGAAGTATGATGGTTTTCATTTGCTCTTATGTGAAATGCTTTTGTTGATTGATGCAAATGGGTCCAATCGATTTGGCATTGTTGATTTTTTAAGATGAATAATGTGTTCATCTAGTGGACAATGTGCCGCCTCCATAAAAAGGTAATTGGTTTTAACTTCGACACAAAAACTCATTAAACTTGGTATTAGAGTGAGTAACATTGTTTCCAAGGTGAACCAAGTTTTATATCTCTTGTTTTTTGGTAATATTATTCGTATAACAGCTCTAACCAATGAAGTAATGAAATTAGTTCGTCAGGAGGCAACTCTAGATTCTTGAGGGAGATGATTTTATTTTCTATTTCCTCGTAGATTACATATCATACTTGATTTGATCTCAAATTCATGTCTGATAACTATTTCTTGTCATTGATAGTTTGTCTTGCTGTTCTACCAATGCTTTGTTTATACTGTAGAGTTCACTTTCATGGAACTAGCTTGCTTTTCCTCCCAATTCTTAACTGGCAAGAATAACGAATACATTGGAGAGGATTTGCTTTCCATGTTCTTTCTGACATATCAAAGAAGCCACATTGTGGAGAGTTCTTGGCTTATTGATTTCATATTAAATTGAAATATTCATTGTGTTTTACCCAGTATTATTGTTTTGACCCATCTCTTCAAACCCCCTTTCATCTTCAGATATCAAAGTGGATGAGTGATAAAAGATACTTTCCTTTATCGACTGCTGATATCGCAACACGGATGAATTTGATCTTAAGAGTTCATGGATTGGAACAGGTGGAAGATTATTTCAATAACATGCCTAGTCAGTTGAAAAGGTGTCAAGTTCATATAGCTCTTCTTAACTGCTATGCGCATGAAAAGTATGCGGATAAAGCCAATGCCGTCCTGCAGAAAATCAAGGAAATGGGTTTTGCTAAAACTTCTCTTCCATACAATATCACGATGAATCTTTATCATCAAATTGGAGAATTTGAGAGATTAGATTCTCCGTTGAAAGAGACGGATGTTGATCACGATCAATTCACATATACCACCCGACTAAGTGCATATGCTACTGCATTTGATTTTACGGGAATCGAAAAGATCATGGAACAAATGGAATGA

mRNA sequence

ATGAAGCTCTTACAATCTCTAAAACCAATTAATTTGATTGCATTCCGGAGAGAATTCGTGAATTTCTACTCTACAGTTGTGAAGGATAGCCTTTACAGAAGGATTTCTCCGGTGGGTGACCCTAATATCTCTGTAACTCCACTTCTTGATCAGTGGGTGTTAGAAAGCGGGCTTGTTCAGCAAGACGAACTTCGGCATATCATCAAGGAGCTTAGGGTTTACAAGCGGTTCAAACATGCTCTTGAGTATTATTGTTTTGACCCATCTCTTCAAACCCCCTTTCATCTTCAGATATCAAAGTGGATGAGTGATAAAAGATACTTTCCTTTATCGACTGCTGATATCGCAACACGGATGAATTTGATCTTAAGAGTTCATGGATTGGAACAGGTGGAAGATTATTTCAATAACATGCCTAGTCAGTTGAAAAGGTGTCAAGTTCATATAGCTCTTCTTAACTGCTATGCGCATGAAAAGTATGCGGATAAAGCCAATGCCGTCCTGCAGAAAATCAAGGAAATGGGTTTTGCTAAAACTTCTCTTCCATACAATATCACGATGAATCTTTATCATCAAATTGGAGAATTTGAGAGATTAGATTCTCCGTTGAAAGAGACGGATGTTGATCACGATCAATTCACATATACCACCCGACTAAGTGCATATGCTACTGCATTTGATTTTACGGGAATCGAAAAGATCATGGAACAAATGGAATGA

Coding sequence (CDS)

ATGAAGCTCTTACAATCTCTAAAACCAATTAATTTGATTGCATTCCGGAGAGAATTCGTGAATTTCTACTCTACAGTTGTGAAGGATAGCCTTTACAGAAGGATTTCTCCGGTGGGTGACCCTAATATCTCTGTAACTCCACTTCTTGATCAGTGGGTGTTAGAAAGCGGGCTTGTTCAGCAAGACGAACTTCGGCATATCATCAAGGAGCTTAGGGTTTACAAGCGGTTCAAACATGCTCTTGAGTATTATTGTTTTGACCCATCTCTTCAAACCCCCTTTCATCTTCAGATATCAAAGTGGATGAGTGATAAAAGATACTTTCCTTTATCGACTGCTGATATCGCAACACGGATGAATTTGATCTTAAGAGTTCATGGATTGGAACAGGTGGAAGATTATTTCAATAACATGCCTAGTCAGTTGAAAAGGTGTCAAGTTCATATAGCTCTTCTTAACTGCTATGCGCATGAAAAGTATGCGGATAAAGCCAATGCCGTCCTGCAGAAAATCAAGGAAATGGGTTTTGCTAAAACTTCTCTTCCATACAATATCACGATGAATCTTTATCATCAAATTGGAGAATTTGAGAGATTAGATTCTCCGTTGAAAGAGACGGATGTTGATCACGATCAATTCACATATACCACCCGACTAAGTGCATATGCTACTGCATTTGATTTTACGGGAATCGAAAAGATCATGGAACAAATGGAATGA

Protein sequence

MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDSPLKETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQME

Homology

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BLAST of CsaV3_1G012240 vs. NCBI nr
Match: XP_011653151.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 443.7 bits (1140), Expect = 3.9e-121
Identity = 224/239 (93.72%), Postives = 224/239 (93.72%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ
Sbjct: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
           QDELRHIIKELRVYKRFKHALE               ISKWMSDKRYFPLSTADIATRMN
Sbjct: 61  QDELRHIIKELRVYKRFKHALE---------------ISKWMSDKRYFPLSTADIATRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS
Sbjct: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180

Query: 181 LPYNITMNLYHQIGEFERLDSPLKETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQME 240
           LPYNITMNLYHQIGEFERLDSPLKETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQME
Sbjct: 181 LPYNITMNLYHQIGEFERLDSPLKETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQME 224

[Close]

BLAST of CsaV3_1G012240 vs. NCBI nr
Match: XP_011653157.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus] >KGN64672.1 hypothetical protein Csa_1G073790 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 9.7e-80
Identity = 157/187 (83.96%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLLQSLKPINLIAFR EFVNFYSTVVKD+LYRRISPVGDPNISVTPLLDQWVLE  LVQ
Sbjct: 1   MKLLQSLKPINLIAFRSEFVNFYSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
           QDELRHIIKELRVYKRFKHALE               ISKWMSDKRYFPLSTADIA RMN
Sbjct: 61  QDELRHIIKELRVYKRFKHALE---------------ISKWMSDKRYFPLSTADIAIRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYF+NMPSQLKR QVHIALLNCYAHEK  DKANA +QKIKEMGFA + 
Sbjct: 121 LILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVDKANAFMQKIKEMGFANSP 172

Query: 181 LPYNITM 188
           LPYNI M
Sbjct: 181 LPYNIMM 172

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BLAST of CsaV3_1G012240 vs. NCBI nr
Match: XP_008442448.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 2.7e-74
Identity = 149/196 (76.02%), Postives = 158/196 (80.61%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLLQS+K INLIAFRRE VNFYST V D LYRR+SPVGDPNIS+ P+LDQWV E   VQ
Sbjct: 1   MKLLQSVKSINLIAFRRELVNFYSTFVNDDLYRRLSPVGDPNISIVPILDQWVSEGRPVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
             ELR IIKELRVYKR+KHALE               +SKWMSDK   PLSTADIATRMN
Sbjct: 61  IVELRLIIKELRVYKRYKHALE---------------MSKWMSDKVCLPLSTADIATRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYFNNMPS+LKR QVHIALLNCYAHEK  DKANA+LQKIKE+GFA T 
Sbjct: 121 LILRVHGLEQVEDYFNNMPSKLKRYQVHIALLNCYAHEKCVDKANALLQKIKELGFATTP 180

Query: 181 LPYNITMNLYHQIGEF 197
            PYNI MNLYHQIGEF
Sbjct: 181 HPYNIMMNLYHQIGEF 181

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BLAST of CsaV3_1G012240 vs. NCBI nr
Match: XP_008442434.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 6.1e-74
Identity = 146/189 (77.25%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLLQS+KP NLIA RR  VNFYST VKD+LYRRISPVGDPNISV P+LDQWVLE  +VQ
Sbjct: 1   MKLLQSVKPTNLIALRRGLVNFYSTFVKDNLYRRISPVGDPNISVIPVLDQWVLEGRVVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
           ++EL+ IIKELRVYKRFKHALE               ISKWMSDKRY PLST D+ATRMN
Sbjct: 61  KEELQKIIKELRVYKRFKHALE---------------ISKWMSDKRYLPLSTDDVATRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYFNNMPSQLKR  VHIALLNCYAHEK  DKANA LQKIKEMG+AK++
Sbjct: 121 LILRVHGLEQVEDYFNNMPSQLKRYHVHIALLNCYAHEKCVDKANAFLQKIKEMGYAKST 174

Query: 181 LPYNITMNL 190
           LPYNI MNL
Sbjct: 181 LPYNIMMNL 174

[Close]

BLAST of CsaV3_1G012240 vs. NCBI nr
Match: XP_022140106.1 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 1.6e-66
Identity = 132/194 (68.04%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLL   K ++ +AFRR   +FYS + +DSLYRRISPVGDPN+SV P+LDQWV E   VQ
Sbjct: 1   MKLLVPGKQVHPVAFRRILGHFYSMIARDSLYRRISPVGDPNVSVIPVLDQWVREGRPVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
           ++EL+ IIKELR+YKR KHALE               ISKWM DKRY PLS+ DIATRMN
Sbjct: 61  REELQKIIKELRIYKRSKHALE---------------ISKWMGDKRYLPLSSVDIATRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYFN++PSQLK+ QVH+ALLNCYAHEK  DKANA+LQKIKEMGF    
Sbjct: 121 LILRVHGLEQVEDYFNSIPSQLKKFQVHVALLNCYAHEKCVDKANAILQKIKEMGFDGAP 179

Query: 181 LPYNITMNLYHQIG 195
           LPYNI MNLY+QIG
Sbjct: 181 LPYNIMMNLYYQIG 179

[Close]

BLAST of CsaV3_1G012240 vs. TAIR10
Match: AT2G20710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39
Identity = 85/214 (39.72%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 29  DSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFDP 88
           D+L RR++  GDP+ S+  +LD W+ +  LV+  EL  IIK LR + RF HA        
Sbjct: 38  DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHA-------- 97

Query: 89  SLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQVH 148
                  LQIS WMS+ R   +S  D+A R++LI +V GL + E +F  +P + +   ++
Sbjct: 98  -------LQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLY 157

Query: 149 IALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDSPLKETD- 208
            ALLNCYA +K   KA  V Q++KE+GF K  LPYN+ +NLY + G++  ++  L+E + 
Sbjct: 158 GALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMED 217

Query: 209 --VDHDQFTYTTRLSAYATAFDFTGIEKIMEQME 240
             V  D FT  TRL AY+   D  G+EK + + E
Sbjct: 218 ETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCE 236

[Close]

BLAST of CsaV3_1G012240 vs. TAIR10
Match: AT4G21705.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-34
Identity = 89/242 (36.78%), Postives = 127/242 (52.48%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           M +L+ + P NLIA R  + N    V K +LY +ISP+GDP  SV P L  WV     V 
Sbjct: 1   MNILRRI-PANLIASRYYYTN---RVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVS 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
             EL  I+ +LR  KRF HALE               +SKWM++      S  + A  ++
Sbjct: 61  VAELIRIVHDLRRRKRFLHALE---------------VSKWMNETGVCVFSPTEHAVHLD 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LI RV+G    E+YF N+  Q K  + + ALLNCY  ++  +K+    +K+KEMGF  +S
Sbjct: 121 LIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSS 180

Query: 181 LPYNITMNLYHQIGEFERLDSPL---KETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQ 240
           L YN  M LY  IG+ E++   L   KE +V  D ++Y   ++A+   +D   I   +  
Sbjct: 181 LTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRD 223

[Close]

BLAST of CsaV3_1G012240 vs. TAIR10
Match: AT4G02820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 118.6 bits (296), Expect = 5.2e-27
Identity = 73/221 (33.03%), Postives = 113/221 (51.13%), Query Frame = 0


Query: 18  EFVNFYSTVV--KDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYK 77
           E  N   TVV  +D+L  R+  +     S    + +W  E   V++ EL  I++ELR  K
Sbjct: 48  ESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIK 107

Query: 78  RFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYF 137
           R+KHALE               I +WM  +    L   D A  ++LI ++ GL   E +F
Sbjct: 108 RYKHALE---------------ICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFF 167

Query: 138 NNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGE 197
            +MP Q++      +LL+ Y   K +DKA A+ +K+ E GF K+ LPYN  +++Y   G+
Sbjct: 168 EDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQ 227

Query: 198 FERLDSPLKETDV--DHDQFTYTTRLSAYATAFDFTGIEKI 235
           FE++   +KE  +    D  TY   L+A+A+  D  G EK+
Sbjct: 228 FEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKV 253

[Close]

BLAST of CsaV3_1G012240 vs. TAIR10
Match: AT5G09450.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26
Identity = 71/215 (33.02%), Postives = 112/215 (52.09%), Query Frame = 0


Query: 28  KDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFD 87
           KD L  RI  +  P  S T +L++W+ E   +  +ELR I KELR  +R+KHALE     
Sbjct: 54  KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALE----- 113

Query: 88  PSLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQV 147
                     +++WM       +S AD A+R++LI +V G++  E YF  +    K  + 
Sbjct: 114 ----------VTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAET 173

Query: 148 HIALLNCYAHEKYADKANAVLQKIKEM-GFAKTSLPYNITMNLYHQIGEFERLD---SPL 207
           + +LL+ YA  K  ++A A+ ++I E       ++ YN  M LY  +G+ E++      L
Sbjct: 174 YTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVL 233

Query: 208 KETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQM 239
           K+  V  D FTY   LS+ A  F+   + KI+E+M
Sbjct: 234 KQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEM 253

[Close]

BLAST of CsaV3_1G012240 vs. TAIR10
Match: AT1G02370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-22
Identity = 65/212 (30.66%), Postives = 111/212 (52.36%), Query Frame = 0


Query: 31  LYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFDPSL 90
           LY+++S +     +V   L+Q+++E   V++D+L    K LR ++R +HA E        
Sbjct: 73  LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFE-------- 132

Query: 91  QTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNM-PSQLKRCQVHI 150
                  I  WM +KR    S +D A  ++LI +  GLE  E+YFNN+ PS       + 
Sbjct: 133 -------IFDWM-EKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYG 192

Query: 151 ALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFER---LDSPLKET 210
           AL+NCY  E   +KA A  + + E+ F   SLP+N  M++Y ++ + E+   L   +K+ 
Sbjct: 193 ALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQR 252

Query: 211 DVDHDQFTYTTRLSAYATAFDFTGIEKIMEQM 239
            +     TY+  + +  +  D  G+EKI+++M
Sbjct: 253 GISPCGVTYSIWMQSCGSLNDLDGLEKIIDEM 268

[Close]

BLAST of CsaV3_1G012240 vs. Swiss-Prot
Match: sp|Q9SKU6|PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 85/214 (39.72%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 29  DSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFDP 88
           D+L RR++  GDP+ S+  +LD W+ +  LV+  EL  IIK LR + RF HA        
Sbjct: 38  DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHA-------- 97

Query: 89  SLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQVH 148
                  LQIS WMS+ R   +S  D+A R++LI +V GL + E +F  +P + +   ++
Sbjct: 98  -------LQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLY 157

Query: 149 IALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDSPLKETD- 208
            ALLNCYA +K   KA  V Q++KE+GF K  LPYN+ +NLY + G++  ++  L+E + 
Sbjct: 158 GALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMED 217

Query: 209 --VDHDQFTYTTRLSAYATAFDFTGIEKIMEQME 240
             V  D FT  TRL AY+   D  G+EK + + E
Sbjct: 218 ETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCE 236

[Close]

BLAST of CsaV3_1G012240 vs. Swiss-Prot
Match: sp|Q84JR3|PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-32
Identity = 89/242 (36.78%), Postives = 127/242 (52.48%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           M +L+ + P NLIA R  + N    V K +LY +ISP+GDP  SV P L  WV     V 
Sbjct: 1   MNILRRI-PANLIASRYYYTN---RVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVS 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
             EL  I+ +LR  KRF HALE               +SKWM++      S  + A  ++
Sbjct: 61  VAELIRIVHDLRRRKRFLHALE---------------VSKWMNETGVCVFSPTEHAVHLD 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LI RV+G    E+YF N+  Q K  + + ALLNCY  ++  +K+    +K+KEMGF  +S
Sbjct: 121 LIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSS 180

Query: 181 LPYNITMNLYHQIGEFERLDSPL---KETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQ 240
           L YN  M LY  IG+ E++   L   KE +V  D ++Y   ++A+   +D   I   +  
Sbjct: 181 LTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRD 223

[Close]

BLAST of CsaV3_1G012240 vs. Swiss-Prot
Match: sp|Q9SY07|PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.4e-26
Identity = 73/221 (33.03%), Postives = 113/221 (51.13%), Query Frame = 0


Query: 18  EFVNFYSTVV--KDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYK 77
           E  N   TVV  +D+L  R+  +     S    + +W  E   V++ EL  I++ELR  K
Sbjct: 48  ESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIK 107

Query: 78  RFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYF 137
           R+KHALE               I +WM  +    L   D A  ++LI ++ GL   E +F
Sbjct: 108 RYKHALE---------------ICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFF 167

Query: 138 NNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGE 197
            +MP Q++      +LL+ Y   K +DKA A+ +K+ E GF K+ LPYN  +++Y   G+
Sbjct: 168 EDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQ 227

Query: 198 FERLDSPLKETDV--DHDQFTYTTRLSAYATAFDFTGIEKI 235
           FE++   +KE  +    D  TY   L+A+A+  D  G EK+
Sbjct: 228 FEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKV 253

[Close]

BLAST of CsaV3_1G012240 vs. Swiss-Prot
Match: sp|Q94B59|PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g09450 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-25
Identity = 71/215 (33.02%), Postives = 112/215 (52.09%), Query Frame = 0


Query: 28  KDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFD 87
           KD L  RI  +  P  S T +L++W+ E   +  +ELR I KELR  +R+KHALE     
Sbjct: 54  KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALE----- 113

Query: 88  PSLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQV 147
                     +++WM       +S AD A+R++LI +V G++  E YF  +    K  + 
Sbjct: 114 ----------VTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAET 173

Query: 148 HIALLNCYAHEKYADKANAVLQKIKEM-GFAKTSLPYNITMNLYHQIGEFERLD---SPL 207
           + +LL+ YA  K  ++A A+ ++I E       ++ YN  M LY  +G+ E++      L
Sbjct: 174 YTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVL 233

Query: 208 KETDVDHDQFTYTTRLSAYATAFDFTGIEKIMEQM 239
           K+  V  D FTY   LS+ A  F+   + KI+E+M
Sbjct: 234 KQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEM 253

[Close]

BLAST of CsaV3_1G012240 vs. Swiss-Prot
Match: sp|Q9FZ24|PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-21
Identity = 65/212 (30.66%), Postives = 111/212 (52.36%), Query Frame = 0


Query: 31  LYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFDPSL 90
           LY+++S +     +V   L+Q+++E   V++D+L    K LR ++R +HA E        
Sbjct: 73  LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFE-------- 132

Query: 91  QTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNM-PSQLKRCQVHI 150
                  I  WM +KR    S +D A  ++LI +  GLE  E+YFNN+ PS       + 
Sbjct: 133 -------IFDWM-EKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYG 192

Query: 151 ALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFER---LDSPLKET 210
           AL+NCY  E   +KA A  + + E+ F   SLP+N  M++Y ++ + E+   L   +K+ 
Sbjct: 193 ALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQR 252

Query: 211 DVDHDQFTYTTRLSAYATAFDFTGIEKIMEQM 239
            +     TY+  + +  +  D  G+EKI+++M
Sbjct: 253 GISPCGVTYSIWMQSCGSLNDLDGLEKIIDEM 268

[Close]

BLAST of CsaV3_1G012240 vs. TrEMBL
Match: tr|A0A0A0LV44|A0A0A0LV44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 6.4e-80
Identity = 157/187 (83.96%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLLQSLKPINLIAFR EFVNFYSTVVKD+LYRRISPVGDPNISVTPLLDQWVLE  LVQ
Sbjct: 1   MKLLQSLKPINLIAFRSEFVNFYSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
           QDELRHIIKELRVYKRFKHALE               ISKWMSDKRYFPLSTADIA RMN
Sbjct: 61  QDELRHIIKELRVYKRFKHALE---------------ISKWMSDKRYFPLSTADIAIRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYF+NMPSQLKR QVHIALLNCYAHEK  DKANA +QKIKEMGFA + 
Sbjct: 121 LILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVDKANAFMQKIKEMGFANSP 172

Query: 181 LPYNITM 188
           LPYNI M
Sbjct: 181 LPYNIMM 172

[Close]

BLAST of CsaV3_1G012240 vs. TrEMBL
Match: tr|A0A1S3B6G4|A0A1S3B6G4_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486307 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.8e-74
Identity = 149/196 (76.02%), Postives = 158/196 (80.61%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLLQS+K INLIAFRRE VNFYST V D LYRR+SPVGDPNIS+ P+LDQWV E   VQ
Sbjct: 1   MKLLQSVKSINLIAFRRELVNFYSTFVNDDLYRRLSPVGDPNISIVPILDQWVSEGRPVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
             ELR IIKELRVYKR+KHALE               +SKWMSDK   PLSTADIATRMN
Sbjct: 61  IVELRLIIKELRVYKRYKHALE---------------MSKWMSDKVCLPLSTADIATRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYFNNMPS+LKR QVHIALLNCYAHEK  DKANA+LQKIKE+GFA T 
Sbjct: 121 LILRVHGLEQVEDYFNNMPSKLKRYQVHIALLNCYAHEKCVDKANALLQKIKELGFATTP 180

Query: 181 LPYNITMNLYHQIGEF 197
            PYNI MNLYHQIGEF
Sbjct: 181 HPYNIMMNLYHQIGEF 181

[Close]

BLAST of CsaV3_1G012240 vs. TrEMBL
Match: tr|A0A1S3B572|A0A1S3B572_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486303 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.0e-74
Identity = 146/189 (77.25%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MKLLQSLKPINLIAFRREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQ 60
           MKLLQS+KP NLIA RR  VNFYST VKD+LYRRISPVGDPNISV P+LDQWVLE  +VQ
Sbjct: 1   MKLLQSVKPTNLIALRRGLVNFYSTFVKDNLYRRISPVGDPNISVIPVLDQWVLEGRVVQ 60

Query: 61  QDELRHIIKELRVYKRFKHALEYYCFDPSLQTPFHLQISKWMSDKRYFPLSTADIATRMN 120
           ++EL+ IIKELRVYKRFKHALE               ISKWMSDKRY PLST D+ATRMN
Sbjct: 61  KEELQKIIKELRVYKRFKHALE---------------ISKWMSDKRYLPLSTDDVATRMN 120

Query: 121 LILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYADKANAVLQKIKEMGFAKTS 180
           LILRVHGLEQVEDYFNNMPSQLKR  VHIALLNCYAHEK  DKANA LQKIKEMG+AK++
Sbjct: 121 LILRVHGLEQVEDYFNNMPSQLKRYHVHIALLNCYAHEKCVDKANAFLQKIKEMGYAKST 174

Query: 181 LPYNITMNL 190
           LPYNI MNL
Sbjct: 181 LPYNIMMNL 174

[Close]

BLAST of CsaV3_1G012240 vs. TrEMBL
Match: tr|A0A0A0LSC2|A0A0A0LSC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 102 MSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYA 161
           MSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYA
Sbjct: 1   MSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNNMPSQLKRCQVHIALLNCYAHEKYA 60

Query: 162 DKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDSPLKETDVDHDQFTYTTRLS 221
           DKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDSPLKETDVDHDQFTYTTRL+
Sbjct: 61  DKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDSPLKETDVDHDQFTYTTRLN 119

[Close]

BLAST of CsaV3_1G012240 vs. TrEMBL
Match: tr|A0A2R6QLF3|A0A2R6QLF3_ACTCH (Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17334 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 118/214 (55.14%), Postives = 157/214 (73.36%), Query Frame = 0


Query: 29  DSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYKRFKHALEYYCFDP 88
           +SLYRRISPVGDP +S+ P+LDQWV E   + +++L+ II+EL+VYKRFKHALE      
Sbjct: 30  NSLYRRISPVGDPRVSIVPVLDQWVREGRPIGREQLQSIIRELKVYKRFKHALE------ 89

Query: 89  SLQTPFHLQISKWMSDKRYFPLSTADIATRMNLILRVHGLEQVEDYFNN-MPSQLKRCQV 148
                    +S WM+D+RY P S AD+ATRMNLILRVHGLEQVE YFNN +P +L+  +V
Sbjct: 90  ---------VSYWMTDRRYIPPSIADLATRMNLILRVHGLEQVESYFNNFIPHRLRGFEV 149

Query: 149 HIALLNCYAHEKYADKANAVLQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDSPLKETD 208
           + ALLNCYAHEK   KA +V+Q++++M FAKT L YNI MNLY+QIG  E+LD+ + E +
Sbjct: 150 YTALLNCYAHEKSVQKAESVMQELRDMEFAKTPLSYNILMNLYYQIGNIEKLDALMHEME 209

Query: 209 VD--HDQFTYTTRLSAYATAFDFTGIEKIMEQME 240
               +D++T+T RLSAYA + D  GI+ I+ +ME
Sbjct: 210 EKGCYDRYTFTIRLSAYAASSDSKGIDNIVARME 228

The following BLAST results are available for this feature:

BLAST of CsaV3_1G012240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653151.1	3.9e-121	93.72	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g...	[more]
XP_011653157.1	9.7e-80	83.96	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_008442448.1	2.7e-74	76.02	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_008442434.1	6.1e-74	77.25	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_022140106.1	1.6e-66	68.04	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momor...	[more]

BLAST of CsaV3_1G012240 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20710.1	1.2e-39	39.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21705.1	5.7e-34	36.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G02820.1	5.2e-27	33.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09450.1	1.5e-26	33.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02370.1	3.9e-22	30.66	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_1G012240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SKU6\|PP166_ARATH	2.1e-38	39.72	Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidop...	[more]
sp\|Q84JR3\|PP334_ARATH	1.0e-32	36.78	Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidop...	[more]
sp\|Q9SY07\|PP302_ARATH	9.4e-26	33.03	Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidop...	[more]
sp\|Q94B59\|PP372_ARATH	2.7e-25	33.02	Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidop...	[more]
sp\|Q9FZ24\|PPR4_ARATH	6.9e-21	30.66	Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidop...	[more]

BLAST of CsaV3_1G012240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV44\|A0A0A0LV44_CUCSA	6.4e-80	83.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1	[more]
tr\|A0A1S3B6G4\|A0A1S3B6G4_CUCME	1.8e-74	76.02	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A1S3B572\|A0A1S3B572_CUCME	4.0e-74	77.25	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A0A0LSC2\|A0A0A0LSC2_CUCSA	1.0e-61	99.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1	[more]
tr\|A0A2R6QLF3\|A0A2R6QLF3_ACTCH	1.1e-58	55.14	Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G012240.1	CsaV3_1G012240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 94..239 e-value: 2.9E-10 score: 42.0
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 29..237
None	No IPR available	PANTHER	PTHR24015:SF1625	SUBFAMILY NOT NAMED	coord: 29..237

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G012240	Cla019500	Watermelon (97103) v1	cucwmB013
CsaV3_1G012240	ClCG03G005990	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G012240	Lsi02G007460	Bottle gourd (USVL1VR-Ls)	cuclsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G012240	Silver-seed gourd	carcucB0170
CsaV3_1G012240	Silver-seed gourd	carcucB0193
CsaV3_1G012240	Silver-seed gourd	carcucB0582
CsaV3_1G012240	Silver-seed gourd	carcucB0672
CsaV3_1G012240	Silver-seed gourd	carcucB0991
CsaV3_1G012240	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G012240	Cucumber (Gy14) v2	cgybcucB248
CsaV3_1G012240	Cucumber (Gy14) v1	cgycucB018
CsaV3_1G012240	Cucumber (Gy14) v1	cgycucB165
CsaV3_1G012240	Cucumber (Gy14) v1	cgycucB174
CsaV3_1G012240	Cucurbita maxima (Rimu)	cmacucB0011
CsaV3_1G012240	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G012240	Cucurbita maxima (Rimu)	cmacucB0465
CsaV3_1G012240	Cucurbita maxima (Rimu)	cmacucB0515
CsaV3_1G012240	Cucurbita maxima (Rimu)	cmacucB0774
CsaV3_1G012240	Cucurbita maxima (Rimu)	cmacucB1005
CsaV3_1G012240	Cucurbita moschata (Rifu)	cmocucB0000
CsaV3_1G012240	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G012240	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G012240	Cucurbita moschata (Rifu)	cmocucB0503
CsaV3_1G012240	Cucurbita moschata (Rifu)	cmocucB0759
CsaV3_1G012240	Cucurbita moschata (Rifu)	cmocucB0989
CsaV3_1G012240	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G012240	Cucurbita pepo (Zucchini)	cpecucB0060
CsaV3_1G012240	Cucurbita pepo (Zucchini)	cpecucB0585
CsaV3_1G012240	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G012240	Cucurbita pepo (Zucchini)	cpecucB0668
CsaV3_1G012240	Cucurbita pepo (Zucchini)	cpecucB0812
CsaV3_1G012240	Cucurbita pepo (Zucchini)	cpecucB0953
CsaV3_1G012240	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G012240	Wild cucumber (PI 183967)	cpicucB202
CsaV3_1G012240	Wild cucumber (PI 183967)	cpicucB310
CsaV3_1G012240	Bottle gourd (USVL1VR-Ls)	cuclsiB020
CsaV3_1G012240	Bottle gourd (USVL1VR-Ls)	cuclsiB056
CsaV3_1G012240	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G012240	Melon (DHL92) v3.5.1	cucmeB092
CsaV3_1G012240	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G012240	Melon (DHL92) v3.6.1	cucmedB085
CsaV3_1G012240	Watermelon (Charleston Gray)	cucwcgB012
CsaV3_1G012240	Watermelon (Charleston Gray)	cucwcgB015
CsaV3_1G012240	Watermelon (97103) v1	cucwmB050
CsaV3_1G012240	Watermelon (97103) v1	cucwmB088
CsaV3_1G012240	Watermelon (97103) v2	cucwmbB001
CsaV3_1G012240	Watermelon (97103) v2	cucwmbB022
CsaV3_1G012240	Watermelon (97103) v2	cucwmbB030
CsaV3_1G012240	Wax gourd	cucwgoB026
CsaV3_1G012240	Wax gourd	cucwgoB041
CsaV3_1G012240	Wax gourd	cucwgoB080
CsaV3_1G012240	Cucumber (Chinese Long) v3	cuccucB030
CsaV3_1G012240	Cucumber (Chinese Long) v3	cuccucB044