CsaV3_1G012040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G012040
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPolyphenol oxidase
Locationchr1 : 7474781 .. 7475464 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAAACTCATCCTTAATGATTAAATTTAATTTACATATGTACATATTTGCTCAAAACAATAATTAAAACACAGGAGCTGGAATTCTAGAAAATCTTCCTCACTCTCCGATCCATGCTTGGTGTGACGATCCGAACCACAAAGGTCAGAACATGGGAATCTTCTACTCCGCCGCAAGAGACCCAATTTTCTACACCCATCACGCCAACGTCGATCGCTGTAGTCAATCTGGAAGTCCATCAACTGAAGGCGCAAAGACATTCCGACCCCGATTTCCTCAACACTTCCTTACTCTTCTACAACGAGAAAGCTGAACCCGTCTGTGTCTACGTTCGTGACTCTCTTGACACTAAAAAACTCGGCTACGTCTTCCAATCTATTGACATCCCATGGCTCAAATCTCGCCCCAAGCCTCTTAACAAGAAGGTCAAGTCCAAGAAGTCTATTGCTGCTAGCATTGTCCCATTCGGTGTTGGTGCAGCCCTTGATGAAAAAGCAAAGTCGATACACTTAAGAATAAAAATGCTTTGTAGAAGGAGGAATAATTGGCAAGAGAAAATCCTAACTTTTTATATATATGACTCCATGGTTTTTTGAGTACACTATTGGAAGTATATATAGAAAGTTTGGGAGGAAAAATTCTTACCCTACACTCACCCACAACAAAGTATACCTCAAAAATATC

mRNA sequence

ATGCTTGGTGTGACGATCCGAACCACAAAGGTCAGAACATGGGAATCTTCTACTCCGCCGCAAGAGACCCAATTTTCTACACCCATCACGCCAACGTCGATCGCTGTAGTCAATCTGGAAGTCCATCAACTGAAGGCGCAAAGACATTCCGACCCCGATTTCCTCAACACTTCCTTACTCTTCTACAACGAGAAAGCTGAACCCGTCTGTGTCTACGTTCGTGACTCTCTTGACACTAAAAAACTCGGCTACGTCTTCCAATCTATTGACATCCCATGGCTCAAATCTCGCCCCAAGCCTCTTAACAAGAAGGTCAAGTCCAAGAAGTCTATTGCTGCTAGCATTGTCCCATTCGGTGTTGGTGCAGCCCTTGATGAAAAAGCAAAGTCGATACACTTAAGAATAAAAATGCTTTGTAGAAGGAGGAATAATTGGCAAGAGAAAATCCTAACTTTTTATATATATGACTCCATGGTTTTTTGA

Coding sequence (CDS)

ATGCTTGGTGTGACGATCCGAACCACAAAGGTCAGAACATGGGAATCTTCTACTCCGCCGCAAGAGACCCAATTTTCTACACCCATCACGCCAACGTCGATCGCTGTAGTCAATCTGGAAGTCCATCAACTGAAGGCGCAAAGACATTCCGACCCCGATTTCCTCAACACTTCCTTACTCTTCTACAACGAGAAAGCTGAACCCGTCTGTGTCTACGTTCGTGACTCTCTTGACACTAAAAAACTCGGCTACGTCTTCCAATCTATTGACATCCCATGGCTCAAATCTCGCCCCAAGCCTCTTAACAAGAAGGTCAAGTCCAAGAAGTCTATTGCTGCTAGCATTGTCCCATTCGGTGTTGGTGCAGCCCTTGATGAAAAAGCAAAGTCGATACACTTAAGAATAAAAATGCTTTGTAGAAGGAGGAATAATTGGCAAGAGAAAATCCTAACTTTTTATATATATGACTCCATGGTTTTTTGA

Protein sequence

MLGVTIRTTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGVGAALDEKAKSIHLRIKMLCRRRNNWQEKILTFYIYDSMVF
Homology
[Close]
BLAST of CsaV3_1G012040 vs. NCBI nr
Match: KGN64653.1 (hypothetical protein Csa_1G073610 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 3.9e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MLGVTIRTTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQRHSDPDFLNTSLL 60
           MLGVTIRTTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQRHSDPDFLNTSLL
Sbjct: 1   MLGVTIRTTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQRHSDPDFLNTSLL 60

Query: 61  FYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGV 120
           FYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGV
Sbjct: 61  FYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGV 120

Query: 121 GAALDEKAKSIHLRIKMLCRRRNNWQEKILTFYIYDSMVF 161
           GAALDEKAKSIHLRIKMLCRRRNNWQEKILTFYIYDSMVF
Sbjct: 121 GAALDEKAKSIHLRIKMLCRRRNNWQEKILTFYIYDSMVF 160

[Close]
BLAST of CsaV3_1G012040 vs. NCBI nr
Match: KGN64654.1 (hypothetical protein Csa_1G073620 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 66/123 (53.66%), Postives = 77/123 (62.60%), Query Frame = 0 

Query: 8   TTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQR-HSDPDFLNTSLLFYNEKA 67
           T +   WE+STPPQETQ S PITP S A           ++    P   N S LFYNEKA
Sbjct: 59  TQRREHWETSTPPQETQSSAPITPASTAFGPFGKPSAGNEKTFKTPTISNASFLFYNEKA 118

Query: 68  EPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKK--SIAASIVPF-GVGAA 127
           E V VYVRDSL+TK L YVFQ ++IPWLK+RP P  K +KSKK  +  ASI PF GV  A
Sbjct: 119 EAVQVYVRDSLNTKTLSYVFQDVNIPWLKARPIP-RKTLKSKKPRATTASIFPFHGVRPA 178

[Close]
BLAST of CsaV3_1G012040 vs. NCBI nr
Match: AKN08990.1 (polyphenol oxidase [Luffa aegyptiaca])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 0 

Query: 45  KAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK 104
           K +   DPD+LN+S +FYNEKAE V VYVRD LD K LGYV+Q  DIPW+K+RP   NK 
Sbjct: 369 KREDLKDPDYLNSSFIFYNEKAEAVRVYVRDCLDLKNLGYVYQDADIPWIKTRPTKRNKP 428

Query: 105 VKSKKSIAASIVPFGVGAALDE 127
            K  K   AS VPFGVGAAL E
Sbjct: 429 KKKPKKQVASTVPFGVGAALAE 450

[Close]
BLAST of CsaV3_1G012040 vs. NCBI nr
Match: PON64214.1 (Polyphenol oxidase [Trema orientalis])

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-14
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 45  KAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK 104
           K +  +DPD+LN   LFY+E A+ V V VRD LDT+KLGYV+Q +DIPWLKSRP P   K
Sbjct: 404 KRRDFTDPDWLNAGFLFYDENAQLVRVKVRDCLDTRKLGYVYQDVDIPWLKSRPTPRKTK 463

Query: 105 VKSKKSIAASIVPFGVGAALDEKAKSI 132
             +K + ++S   FG   A +E+ K I
Sbjct: 464 A-TKVATSSSGSSFGAALAAEERKKPI 489

[Close]
BLAST of CsaV3_1G012040 vs. NCBI nr
Match: PON50737.1 (Polyphenol oxidase [Parasponia andersonii])

HSP 1 Score: 87.0 bits (214), Expect = 6.2e-14
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 45  KAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK 104
           K +  +DPD+LN   LFY+E A+ V V VRD LDT+KLGYV+Q +DIPWLKSRP P   K
Sbjct: 404 KRRDFTDPDWLNAGFLFYDENAQLVRVKVRDCLDTRKLGYVYQDVDIPWLKSRPTPRKTK 463

Query: 105 VKSKKSIAASIVPFGVGAALDEKAKSI 132
             +K + ++S   FG   A +E+ K I
Sbjct: 464 A-TKVATSSSGSSFGPALAAEERKKPI 489

[Close]
BLAST of CsaV3_1G012040 vs. Swiss-Prot
Match: sp|Q9FRX6|AS1_ANTMA (Aureusidin synthase OS=Antirrhinum majus OX=4151 GN=AS1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 50  SDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKP 101
           +DPDFL+ S +FY+E AE V V VRD LD KKLGYV+Q ++IPWL +RP P
Sbjct: 357 TDPDFLDASFVFYDENAEMVRVKVRDCLDEKKLGYVYQDVEIPWLNTRPTP 407

[Close]
BLAST of CsaV3_1G012040 vs. Swiss-Prot
Match: sp|P43309|PPO_MALDO (Polyphenol oxidase, chloroplastic OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 50  SDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKK 109
           +D D+L++  LFYNE AE V V VRD L+TK LGYV+Q +DIPWL S+P P   KV   K
Sbjct: 382 TDSDWLDSGFLFYNENAELVRVKVRDCLETKNLGYVYQDVDIPWLSSKPTPRRAKVALSK 441

[Close]
BLAST of CsaV3_1G012040 vs. Swiss-Prot
Match: sp|Q6UIL3|LAHY_LARTR ((+)-larreatricin hydroxylase, chloroplastic OS=Larrea tridentata OX=66636 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 42  HQLKAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKP 101
           + L  + +   D+LN   L ++E A+PV VYVRD+LD +KLGY +Q +DIPW+ S+PKP
Sbjct: 365 NSLGRKDYKKKDWLNAGFLLFDENAQPVRVYVRDALDERKLGYAYQEVDIPWINSKPKP 423

[Close]
BLAST of CsaV3_1G012040 vs. Swiss-Prot
Match: sp|Q9ZP19|PPO1_IPOBA (Polyphenol oxidase I, chloroplastic OS=Ipomoea batatas OX=4120 GN=co-1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-10
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 49  HSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK---- 108
           ++D D+LN + LFY+E  + V V + DSLD +K+GY +    +PWL S+P P  KK    
Sbjct: 296 YTDSDWLNATFLFYDENGQAVKVRIGDSLDNQKMGYKYAKTPLPWLDSKPVPTKKKGGYA 355

Query: 109 VKSKKSIAASIVP 118
            KSK    AS+ P
Sbjct: 356 SKSKAPFVASVFP 368

[Close]
BLAST of CsaV3_1G012040 vs. Swiss-Prot
Match: sp|Q06215|PPO_VICFA (Polyphenol oxidase A1, chloroplastic OS=Vicia faba OX=3906 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 45  KAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK 104
           K    +D D+L +  LFY+E    V V V+DSLD  KLGY +Q + IPW K++P P   K
Sbjct: 383 KKHDFTDKDWLESGFLFYDENKNLVRVNVKDSLDIDKLGYAYQDVPIPWEKAKPVPRRTK 442

Query: 105 VK 107
           V+
Sbjct: 443 VQ 444

[Close]
BLAST of CsaV3_1G012040 vs. TrEMBL
Match: tr|A0A0A0LSA5|A0A0A0LSA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073610 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.6e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MLGVTIRTTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQRHSDPDFLNTSLL 60
           MLGVTIRTTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQRHSDPDFLNTSLL
Sbjct: 1   MLGVTIRTTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQRHSDPDFLNTSLL 60

Query: 61  FYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGV 120
           FYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGV
Sbjct: 61  FYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGV 120

Query: 121 GAALDEKAKSIHLRIKMLCRRRNNWQEKILTFYIYDSMVF 161
           GAALDEKAKSIHLRIKMLCRRRNNWQEKILTFYIYDSMVF
Sbjct: 121 GAALDEKAKSIHLRIKMLCRRRNNWQEKILTFYIYDSMVF 160

[Close]
BLAST of CsaV3_1G012040 vs. TrEMBL
Match: tr|A0A0A0LUI6|A0A0A0LUI6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073620 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 66/123 (53.66%), Postives = 77/123 (62.60%), Query Frame = 0 

Query: 8   TTKVRTWESSTPPQETQFSTPITPTSIAVVNLEVHQLKAQR-HSDPDFLNTSLLFYNEKA 67
           T +   WE+STPPQETQ S PITP S A           ++    P   N S LFYNEKA
Sbjct: 59  TQRREHWETSTPPQETQSSAPITPASTAFGPFGKPSAGNEKTFKTPTISNASFLFYNEKA 118

Query: 68  EPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKKVKSKK--SIAASIVPF-GVGAA 127
           E V VYVRDSL+TK L YVFQ ++IPWLK+RP P  K +KSKK  +  ASI PF GV  A
Sbjct: 119 EAVQVYVRDSLNTKTLSYVFQDVNIPWLKARPIP-RKTLKSKKPRATTASIFPFHGVRPA 178

[Close]
BLAST of CsaV3_1G012040 vs. TrEMBL
Match: tr|A0A0U2D7M5|A0A0U2D7M5_LUFAE (Polyphenol oxidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 0 

Query: 45  KAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK 104
           K +   DPD+LN+S +FYNEKAE V VYVRD LD K LGYV+Q  DIPW+K+RP   NK 
Sbjct: 369 KREDLKDPDYLNSSFIFYNEKAEAVRVYVRDCLDLKNLGYVYQDADIPWIKTRPTKRNKP 428

Query: 105 VKSKKSIAASIVPFGVGAALDE 127
            K  K   AS VPFGVGAAL E
Sbjct: 429 KKKPKKQVASTVPFGVGAALAE 450

[Close]
BLAST of CsaV3_1G012040 vs. TrEMBL
Match: tr|A0A2P5CT40|A0A2P5CT40_9ROSA (Polyphenol oxidase OS=Trema orientalis OX=63057 GN=TorRG33x02_273880 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 45  KAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK 104
           K +  +DPD+LN   LFY+E A+ V V VRD LDT+KLGYV+Q +DIPWLKSRP P   K
Sbjct: 404 KRRDFTDPDWLNAGFLFYDENAQLVRVKVRDCLDTRKLGYVYQDVDIPWLKSRPTPRKTK 463

Query: 105 VKSKKSIAASIVPFGVGAALDEKAKSI 132
             +K + ++S   FG   A +E+ K I
Sbjct: 464 A-TKVATSSSGSSFGAALAAEERKKPI 489

[Close]
BLAST of CsaV3_1G012040 vs. TrEMBL
Match: tr|A0A2P5BPK0|A0A2P5BPK0_PARAD (Polyphenol oxidase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_221090 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-14
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 45  KAQRHSDPDFLNTSLLFYNEKAEPVCVYVRDSLDTKKLGYVFQSIDIPWLKSRPKPLNKK 104
           K +  +DPD+LN   LFY+E A+ V V VRD LDT+KLGYV+Q +DIPWLKSRP P   K
Sbjct: 404 KRRDFTDPDWLNAGFLFYDENAQLVRVKVRDCLDTRKLGYVYQDVDIPWLKSRPTPRKTK 463

Query: 105 VKSKKSIAASIVPFGVGAALDEKAKSI 132
             +K + ++S   FG   A +E+ K I
Sbjct: 464 A-TKVATSSSGSSFGPALAAEERKKPI 489

The following BLAST results are available for this feature:
BLAST of CsaV3_1G012040 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64653.13.9e-85100.00hypothetical protein Csa_1G073610 [Cucumis sativus][more]
KGN64654.12.6e-2053.66hypothetical protein Csa_1G073620 [Cucumis sativus][more]
AKN08990.11.7e-1962.20polyphenol oxidase [Luffa aegyptiaca][more]
PON64214.13.6e-1450.57Polyphenol oxidase [Trema orientalis][more]
PON50737.16.2e-1450.57Polyphenol oxidase [Parasponia andersonii][more]
BLAST of CsaV3_1G012040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G012040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FRX6|AS1_ANTMA1.4e-1262.75Aureusidin synthase OS=Antirrhinum majus OX=4151 GN=AS1 PE=1 SV=1[more]
sp|P43309|PPO_MALDO1.8e-1256.67Polyphenol oxidase, chloroplastic OS=Malus domestica OX=3750 PE=2 SV=1[more]
sp|Q6UIL3|LAHY_LARTR5.2e-1249.15(+)-larreatricin hydroxylase, chloroplastic OS=Larrea tridentata OX=66636 PE=1 S... [more]
sp|Q9ZP19|PPO1_IPOBA8.2e-1042.47Polyphenol oxidase I, chloroplastic OS=Ipomoea batatas OX=4120 GN=co-1 PE=1 SV=1[more]
sp|Q06215|PPO_VICFA1.2e-0845.16Polyphenol oxidase A1, chloroplastic OS=Vicia faba OX=3906 PE=1 SV=1[more]
BLAST of CsaV3_1G012040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSA5|A0A0A0LSA5_CUCSA2.6e-85100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073610 PE=4 SV=1[more]
tr|A0A0A0LUI6|A0A0A0LUI6_CUCSA1.7e-2053.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073620 PE=4 SV=1[more]
tr|A0A0U2D7M5|A0A0U2D7M5_LUFAE1.1e-1962.20Polyphenol oxidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1[more]
tr|A0A2P5CT40|A0A2P5CT40_9ROSA2.4e-1450.57Polyphenol oxidase OS=Trema orientalis OX=63057 GN=TorRG33x02_273880 PE=4 SV=1[more]
tr|A0A2P5BPK0|A0A2P5BPK0_PARAD4.1e-1450.57Polyphenol oxidase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_221090 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0004097catechol oxidase activity
Vocabulary: INTERPRO
TermDefinition
IPR022739Polyphenol_oxidase_cen
IPR008922Unchr_di-copper_centre
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006570 tyrosine metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004097 catechol oxidase activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G012040.1CsaV3_1G012040.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008922Uncharacterised domain, di-copper centreGENE3DG3DSA:1.10.1280.10coord: 38..95
e-value: 4.0E-8
score: 35.0
IPR008922Uncharacterised domain, di-copper centreSUPERFAMILYSSF48056Di-copper centre-containing domaincoord: 44..101
IPR022739Polyphenol oxidase, central domainPFAMPF12142PPO1_DWLcoord: 50..99
e-value: 8.3E-20
score: 70.2
NoneNo IPR availablePANTHERPTHR11474:SF67SUBFAMILY NOT NAMEDcoord: 49..137
NoneNo IPR availablePANTHERPTHR11474TYROSINASEcoord: 49..137

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G012040CSPI01G11870Wild cucumber (PI 183967)cpicucB001
CsaV3_1G012040Cucsa.126480Cucumber (Gy14) v1cgycucB174
CsaV3_1G012040CsGy1G011850Cucumber (Gy14) v2cgybcucB002
CsaV3_1G012040Cla019482Watermelon (97103) v1cucwmB013
CsaV3_1G012040MELO3C002579Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G012040ClCG03G005810Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G012040Lsi02G007290Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G012040MELO3C002579.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G012040Cla97C03G057100Watermelon (97103) v2cucwmbB030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G012040Cucumber (Chinese Long) v3cuccucB020
CsaV3_1G012040Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G012040Silver-seed gourdcarcucB0170
CsaV3_1G012040Silver-seed gourdcarcucB0672
CsaV3_1G012040Silver-seed gourdcarcucB0939
CsaV3_1G012040Silver-seed gourdcarcucB0969
CsaV3_1G012040Silver-seed gourdcarcucB0991
CsaV3_1G012040Cucumber (Gy14) v2cgybcucB104
CsaV3_1G012040Cucumber (Gy14) v1cgycucB018
CsaV3_1G012040Cucumber (Gy14) v1cgycucB073
CsaV3_1G012040Cucurbita maxima (Rimu)cmacucB0011
CsaV3_1G012040Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G012040Cucurbita maxima (Rimu)cmacucB0371
CsaV3_1G012040Cucurbita maxima (Rimu)cmacucB0465
CsaV3_1G012040Cucurbita maxima (Rimu)cmacucB0515
CsaV3_1G012040Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G012040Cucurbita moschata (Rifu)cmocucB0000
CsaV3_1G012040Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G012040Cucurbita moschata (Rifu)cmocucB0368
CsaV3_1G012040Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G012040Cucurbita moschata (Rifu)cmocucB0503
CsaV3_1G012040Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G012040Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G012040Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G012040Cucurbita pepo (Zucchini)cpecucB0244
CsaV3_1G012040Cucurbita pepo (Zucchini)cpecucB0585
CsaV3_1G012040Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G012040Cucurbita pepo (Zucchini)cpecucB0668
CsaV3_1G012040Cucurbita pepo (Zucchini)cpecucB0953
CsaV3_1G012040Wild cucumber (PI 183967)cpicucB129
CsaV3_1G012040Wild cucumber (PI 183967)cpicucB310
CsaV3_1G012040Bottle gourd (USVL1VR-Ls)cuclsiB065
CsaV3_1G012040Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G012040Bottle gourd (USVL1VR-Ls)cuclsiB056
CsaV3_1G012040Melon (DHL92) v3.5.1cucmeB083
CsaV3_1G012040Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G012040Melon (DHL92) v3.6.1cucmedB078
CsaV3_1G012040Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G012040Watermelon (Charleston Gray)cucwcgB012
CsaV3_1G012040Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G012040Watermelon (97103) v1cucwmB050
CsaV3_1G012040Watermelon (97103) v1cucwmB088
CsaV3_1G012040Watermelon (97103) v2cucwmbB001
CsaV3_1G012040Watermelon (97103) v2cucwmbB015
CsaV3_1G012040Watermelon (97103) v2cucwmbB022
CsaV3_1G012040Wax gourdcucwgoB000
CsaV3_1G012040Wax gourdcucwgoB026