CsaV3_1G012020 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G012020
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Polyphenol oxidase
Location	chr1 : 7463942 .. 7464607 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTGTTTGGACTTGGAGGGCTTCACGGCGTCACGACTCTTAGCAGCGATAACTTTATTTGCATTGGCGGATTCGCTGTTGTCGCCGGATGTTCTTAACTGCGTGACAAAAGGAAAACACCAGCAGGGGACGATGGATGTTGCCCACCTGAAATCGAAGAAATTATTGAGTTTGTCCCCCCGGTCATTCCAACACCCCGTATCCGACCCGCTGCCCATACAATGACCACAACCCAGCTTGATGATTTGAAAAAAGGGATTGAAAAGATGAGAGCCCTTAGTGACGATGACCCTCGTAGTTTGTATCAACAAGCTAATGTCCACTGTGCCCATTGCAATGATGCATCCTTCTGAATCAGTAGCTAAAGTTCAAGTTCATAGCAACGCTTTATTCTTCCCACCTCACCGTGCTTATCTTTACTTCTTTGAGAGATTTTTAAGTTCTTTGATTGGGAACCCAGATTTTGCTATACCTTTTTGGAATTGGGATACACCTGATGGCATGTACAATATGACTGAACCCTACAACGACCCGAATTCATCGCTTTACGATAAGTTCCGCGATCCACTTCTCATGTTAAAAAAAAATTGCTTTATCTTAACTACGACAGAAAAACCGAAGACCATGGTTTCGACATTGTTGAATGTAAACTCCATTGGATGA

mRNA sequence

ATGTACTGTTTGGACTTGGAGGGCTTCACGGCGTCACGACTCTTAGCAGCGATAACTTTATTTGCATTGGCGGATTCGCTGTTGTCGCCGGATGTTCTTAACTGCGTGACAAAAGGAAAACACCAGCAGGGGACGATGGATGTTGCCCACCTGAAATCGAAGAAATTATTGAGTTTGTCCCCCCGGTCATTCCAACACCCCCTAATGTCCACTGTGCCCATTGCAATGATGCATCCTTCTGAATCAGTAGCTAAAGTTCAAGTTCATAGCAACGCTTTATTCTTCCCACCTCACCGTGCTTATCTTTACTTCTTTGAGAGATTTTTAAGTTCTTTGATTGGGAACCCAGATTTTGCTATACCTTTTTGGAATTGGGATACACCTGATGGCATGTACAATATGACTGAACCCTACAACGACCCGAATTCATCGCTTTACGATAAGTTCCGCGATCCACTTCTCATGTTAAAAAAAAATTGCTTTATCTTAACTACGACAGAAAAACCGAAGACCATGGTTTCGACATTGTTGAATGTAAACTCCATTGGATGA

Coding sequence (CDS)

ATGTACTGTTTGGACTTGGAGGGCTTCACGGCGTCACGACTCTTAGCAGCGATAACTTTATTTGCATTGGCGGATTCGCTGTTGTCGCCGGATGTTCTTAACTGCGTGACAAAAGGAAAACACCAGCAGGGGACGATGGATGTTGCCCACCTGAAATCGAAGAAATTATTGAGTTTGTCCCCCCGGTCATTCCAACACCCCCTAATGTCCACTGTGCCCATTGCAATGATGCATCCTTCTGAATCAGTAGCTAAAGTTCAAGTTCATAGCAACGCTTTATTCTTCCCACCTCACCGTGCTTATCTTTACTTCTTTGAGAGATTTTTAAGTTCTTTGATTGGGAACCCAGATTTTGCTATACCTTTTTGGAATTGGGATACACCTGATGGCATGTACAATATGACTGAACCCTACAACGACCCGAATTCATCGCTTTACGATAAGTTCCGCGATCCACTTCTCATGTTAAAAAAAAATTGCTTTATCTTAACTACGACAGAAAAACCGAAGACCATGGTTTCGACATTGTTGAATGTAAACTCCATTGGATGA

Protein sequence

MYCLDLEGFTASRLLAAITLFALADSLLSPDVLNCVTKGKHQQGTMDVAHLKSKKLLSLSPRSFQHPLMSTVPIAMMHPSESVAKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSSLYDKFRDPLLMLKKNCFILTTTEKPKTMVSTLLNVNSIG

Homology

[Close]

BLAST of CsaV3_1G012020 vs. NCBI nr
Match: KGN64650.1 (hypothetical protein Csa_1G073100 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 3.2e-83
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MYCLDLEGFTASRLLAAITLFALADSLLSPDVLNCVTKGKHQQGTMDVAHLKSKKLLSLS 60
           MYCLDLEGFTASRLLAAITLFALADSLLSPDVLNCVTKGKHQQGTMDVAHLKSKKLLSLS
Sbjct: 1   MYCLDLEGFTASRLLAAITLFALADSLLSPDVLNCVTKGKHQQGTMDVAHLKSKKLLSLS 60

Query: 61  PRSFQHPLMSTVPIAMMHPSESVAKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAI 120
           PRSFQHPLMSTVPIAMMHPSESVAKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAI
Sbjct: 61  PRSFQHPLMSTVPIAMMHPSESVAKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAI 120

Query: 121 PFWNWDTPDGMYNMTEPYNDPNSSLYDKFRDPLLM 156
           PFWNWDTPDGMYNMTEPYNDPNSSLYDKFRDPLL+
Sbjct: 121 PFWNWDTPDGMYNMTEPYNDPNSSLYDKFRDPLLI 155

[Close]

BLAST of CsaV3_1G012020 vs. NCBI nr
Match: XP_008446626.1 (PREDICTED: polyphenol oxidase I, chloroplastic-like [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           + +VHSNALFFP HRAYLYFFER L   IGNPDFAIPFWNWD+P GM+ M E YN P+SS
Sbjct: 342 RFEVHSNALFFPFHRAYLYFFERILRHYIGNPDFAIPFWNWDSPPGMH-MPEFYNRPSSS 401

Query: 145 LYDKFRDP 153
           LYD  RDP
Sbjct: 402 LYDNLRDP 408

[Close]

BLAST of CsaV3_1G012020 vs. NCBI nr
Match: XP_004146641.1 (PREDICTED: polyphenol oxidase, chloroplastic-like [Cucumis sativus] >KGN64649.1 hypothetical protein Csa_1G073090 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 88  VHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSSLYD 147
           VHSNALFFP HRAYLYFFER L   IGNP+FAIPFWNWD+P GMY M E YN P+SSLYD
Sbjct: 179 VHSNALFFPFHRAYLYFFERILRHYIGNPNFAIPFWNWDSPPGMY-MPEFYNRPSSSLYD 238

Query: 148 KFRDP 153
             RDP
Sbjct: 239 HLRDP 242

[Close]

BLAST of CsaV3_1G012020 vs. NCBI nr
Match: XP_022994369.1 (polyphenol oxidase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 84  AKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNS 143
           A++QVH NALFFP HRAYLYFFER L  LI  PDFAIPFWNWD   GM  M E Y+ PNS
Sbjct: 174 AEMQVHWNALFFPFHRAYLYFFERILGHLINEPDFAIPFWNWDNKKGM-QMPEIYDHPNS 233

Query: 144 SLYDKFRD 152
            LYDK R+
Sbjct: 234 PLYDKLRN 240

[Close]

BLAST of CsaV3_1G012020 vs. NCBI nr
Match: XP_023542623.1 (polyphenol oxidase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 5.2e-17
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 84  AKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNS 143
           A++QVH NALFFP HRAYLYFFER L  LI  P+F IPFWNWD  +GM  M + Y++PNS
Sbjct: 171 AEMQVHWNALFFPFHRAYLYFFERILGHLINEPNFVIPFWNWDNNEGM-QMPKIYDNPNS 230

Query: 144 SLYDKFRDP 153
            LYDK R+P
Sbjct: 231 PLYDKLRNP 238

[Close]

BLAST of CsaV3_1G012020 vs. Swiss-Prot
Match: sp|Q6UIL3|LAHY_LARTR ((+)-larreatricin hydroxylase, chloroplastic OS=Larrea tridentata OX=66636 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-16
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 86  VQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSSL 145
           +QVH + LF P HR YLYF+ER L SLI +P FAIPFWNWD P GM+ M   + DPNS L
Sbjct: 185 IQVHHSWLFLPFHRWYLYFYERILGSLIDDPTFAIPFWNWDAPKGMH-MPHMFIDPNSPL 244

Query: 146 YDKFRDP 153
           YD  R+P
Sbjct: 245 YDAKRNP 250

[Close]

BLAST of CsaV3_1G012020 vs. Swiss-Prot
Match: sp|P43309|PPO_MALDO (Polyphenol oxidase, chloroplastic OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           ++Q+H++ LFFP HR YLYFFE+ L  LI +P FA+PFWNWD+P GM  +   Y DP S 
Sbjct: 192 ELQIHNSWLFFPFHRYYLYFFEKILGKLINDPTFALPFWNWDSPAGM-PLPAIYADPKSP 251

Query: 145 LYDKFR 151
           LYDK R
Sbjct: 252 LYDKLR 256

[Close]

BLAST of CsaV3_1G012020 vs. Swiss-Prot
Match: sp|Q9ZP19|PPO1_IPOBA (Polyphenol oxidase I, chloroplastic OS=Ipomoea batatas OX=4120 GN=co-1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           ++QVH++ LFFP HR YLYF+ER L  LIG+P F +PFWNWD P GM  + +  ND  SS
Sbjct: 105 EIQVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWNWDNPGGMV-LPDFLNDSTSS 164

Query: 145 LYDKFRD 152
           LYD  R+
Sbjct: 165 LYDSNRN 170

[Close]

BLAST of CsaV3_1G012020 vs. Swiss-Prot
Match: sp|Q9MB14|PPO2_IPOBA (Polyphenol oxidase II, chloroplastic OS=Ipomoea batatas OX=4120 GN=co-2 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           ++QVH++ LFFP HR YLYF+ER L  LIG+P F +PFWNWDTP GM  + + + + NS 
Sbjct: 195 EIQVHNSWLFFPFHRWYLYFYERILGKLIGDPTFGLPFWNWDTPAGML-IPQYFRNQNSP 254

Query: 145 LYDKFRD----PLLM 156
           LYD+ R+    PL+M
Sbjct: 255 LYDENRNQSHLPLVM 268

[Close]

BLAST of CsaV3_1G012020 vs. Swiss-Prot
Match: sp|Q06215|PPO_VICFA (Polyphenol oxidase A1, chloroplastic OS=Vicia faba OX=3906 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           K+QVH + LFFP HR YLYF+ER L SLI +P FA+PFWN+D PDGM  +   Y D  S 
Sbjct: 198 KLQVHGSWLFFPFHRWYLYFYERILGSLINDPTFALPFWNYDAPDGM-QLPTIYADKASP 257

Query: 145 LYDKFRD 152
           LYD+ R+
Sbjct: 258 LYDELRN 263

[Close]

BLAST of CsaV3_1G012020 vs. TrEMBL
Match: tr|A0A0A0LRV2|A0A0A0LRV2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073100 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.1e-83
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MYCLDLEGFTASRLLAAITLFALADSLLSPDVLNCVTKGKHQQGTMDVAHLKSKKLLSLS 60
           MYCLDLEGFTASRLLAAITLFALADSLLSPDVLNCVTKGKHQQGTMDVAHLKSKKLLSLS
Sbjct: 1   MYCLDLEGFTASRLLAAITLFALADSLLSPDVLNCVTKGKHQQGTMDVAHLKSKKLLSLS 60

Query: 61  PRSFQHPLMSTVPIAMMHPSESVAKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAI 120
           PRSFQHPLMSTVPIAMMHPSESVAKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAI
Sbjct: 61  PRSFQHPLMSTVPIAMMHPSESVAKVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAI 120

Query: 121 PFWNWDTPDGMYNMTEPYNDPNSSLYDKFRDPLLM 156
           PFWNWDTPDGMYNMTEPYNDPNSSLYDKFRDPLL+
Sbjct: 121 PFWNWDTPDGMYNMTEPYNDPNSSLYDKFRDPLLI 155

[Close]

BLAST of CsaV3_1G012020 vs. TrEMBL
Match: tr|A0A1S3BFJ5|A0A1S3BFJ5_CUCME (polyphenol oxidase I, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489300 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           + +VHSNALFFP HRAYLYFFER L   IGNPDFAIPFWNWD+P GM+ M E YN P+SS
Sbjct: 342 RFEVHSNALFFPFHRAYLYFFERILRHYIGNPDFAIPFWNWDSPPGMH-MPEFYNRPSSS 401

Query: 145 LYDKFRDP 153
           LYD  RDP
Sbjct: 402 LYDNLRDP 408

[Close]

BLAST of CsaV3_1G012020 vs. TrEMBL
Match: tr|A0A0A0LUI1|A0A0A0LUI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073090 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.5e-20
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 88  VHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSSLYD 147
           VHSNALFFP HRAYLYFFER L   IGNP+FAIPFWNWD+P GMY M E YN P+SSLYD
Sbjct: 179 VHSNALFFPFHRAYLYFFERILRHYIGNPNFAIPFWNWDSPPGMY-MPEFYNRPSSSLYD 238

Query: 148 KFRDP 153
             RDP
Sbjct: 239 HLRDP 242

[Close]

BLAST of CsaV3_1G012020 vs. TrEMBL
Match: tr|W9S216|W9S216_9ROSA (Polyphenol oxidase OS=Morus notabilis OX=981085 GN=L484_012121 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           ++QVH N LFFP HR YLYF+ER L  LIG+PDFAIPFWNWD PDGM       +DPNS 
Sbjct: 195 ELQVHFNWLFFPFHRWYLYFYERILGKLIGDPDFAIPFWNWDHPDGMTMPAMFTSDPNSD 254

Query: 145 LYDKFRDP 153
           LYD  R P
Sbjct: 255 LYDVNRSP 262

[Close]

BLAST of CsaV3_1G012020 vs. TrEMBL
Match: tr|A0A0N7EI22|A0A0N7EI22_MORAL (Polyphenol oxidase OS=Morus alba var. multicaulis OX=170012 GN=PPO1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 85  KVQVHSNALFFPPHRAYLYFFERFLSSLIGNPDFAIPFWNWDTPDGMYNMTEPYNDPNSS 144
           ++QVH N LFFP HR YLYF+ER L  LIG+PDFAIPFWNWD PDGM       +DPNS 
Sbjct: 195 ELQVHFNWLFFPFHRWYLYFYERILGKLIGDPDFAIPFWNWDHPDGMTMPAMFTSDPNSD 254

Query: 145 LYDKFRDP 153
           LYD  R P
Sbjct: 255 LYDVNRSP 262

The following BLAST results are available for this feature:

BLAST of CsaV3_1G012020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64650.1	3.2e-83	99.35	hypothetical protein Csa_1G073100 [Cucumis sativus]	[more]
XP_008446626.1	3.0e-20	73.53	PREDICTED: polyphenol oxidase I, chloroplastic-like [Cucumis melo]	[more]
XP_004146641.1	1.1e-19	76.92	PREDICTED: polyphenol oxidase, chloroplastic-like [Cucumis sativus] >KGN64649.1 ...	[more]
XP_022994369.1	3.1e-17	69.12	polyphenol oxidase, chloroplastic-like [Cucurbita maxima]	[more]
XP_023542623.1	5.2e-17	65.22	polyphenol oxidase, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G012020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G012020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6UIL3\|LAHY_LARTR	1.8e-16	61.19	(+)-larreatricin hydroxylase, chloroplastic OS=Larrea tridentata OX=66636 PE=1 S...	[more]
sp\|P43309\|PPO_MALDO	1.1e-15	57.58	Polyphenol oxidase, chloroplastic OS=Malus domestica OX=3750 PE=2 SV=1	[more]
sp\|Q9ZP19\|PPO1_IPOBA	2.0e-15	56.72	Polyphenol oxidase I, chloroplastic OS=Ipomoea batatas OX=4120 GN=co-1 PE=1 SV=1	[more]
sp\|Q9MB14\|PPO2_IPOBA	2.0e-15	53.33	Polyphenol oxidase II, chloroplastic OS=Ipomoea batatas OX=4120 GN=co-2 PE=2 SV=...	[more]
sp\|Q06215\|PPO_VICFA	5.7e-15	58.21	Polyphenol oxidase A1, chloroplastic OS=Vicia faba OX=3906 PE=1 SV=1	[more]

BLAST of CsaV3_1G012020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRV2\|A0A0A0LRV2_CUCSA	2.1e-83	99.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073100 PE=4 SV=1	[more]
tr\|A0A1S3BFJ5\|A0A1S3BFJ5_CUCME	2.0e-20	73.53	polyphenol oxidase I, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489300...	[more]
tr\|A0A0A0LUI1\|A0A0A0LUI1_CUCSA	7.5e-20	76.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073090 PE=4 SV=1	[more]
tr\|W9S216\|W9S216_9ROSA	2.9e-16	64.71	Polyphenol oxidase OS=Morus notabilis OX=981085 GN=L484_012121 PE=4 SV=1	[more]
tr\|A0A0N7EI22\|A0A0N7EI22_MORAL	2.9e-16	64.71	Polyphenol oxidase OS=Morus alba var. multicaulis OX=170012 GN=PPO1 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR002227	Tyrosinase_Cu-bd
IPR008922	Unchr_di-copper_centre

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004097	catechol oxidase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G012020.1	CsaV3_1G012020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008922	Uncharacterised domain, di-copper centre	GENE3D	G3DSA:1.10.1280.10		coord: 47..180 e-value: 2.1E-20 score: 75.5
IPR008922	Uncharacterised domain, di-copper centre	SUPERFAMILY	SSF48056	Di-copper centre-containing domain	coord: 70..168
IPR002227	Tyrosinase copper-binding domain	PFAM	PF00264	Tyrosinase	coord: 74..135 e-value: 2.1E-13 score: 51.0
None	No IPR available	PANTHER	PTHR11474	TYROSINASE	coord: 84..152
None	No IPR available	PANTHER	PTHR11474:SF69	SUBFAMILY NOT NAMED	coord: 84..152

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G012020	CsGy1G011830	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G012020	MELO3C002577	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G012020	MELO3C002576.2	Melon (DHL92) v3.6.1	cucmedB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G012020	Silver-seed gourd	carcucB0170
CsaV3_1G012020	Silver-seed gourd	carcucB0672
CsaV3_1G012020	Silver-seed gourd	carcucB0939
CsaV3_1G012020	Silver-seed gourd	carcucB0969
CsaV3_1G012020	Silver-seed gourd	carcucB0991
CsaV3_1G012020	Cucumber (Gy14) v2	cgybcucB104
CsaV3_1G012020	Cucumber (Gy14) v1	cgycucB018
CsaV3_1G012020	Cucumber (Gy14) v1	cgycucB073
CsaV3_1G012020	Cucumber (Gy14) v1	cgycucB174
CsaV3_1G012020	Cucurbita maxima (Rimu)	cmacucB0011
CsaV3_1G012020	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G012020	Cucurbita maxima (Rimu)	cmacucB0371
CsaV3_1G012020	Cucurbita maxima (Rimu)	cmacucB0465
CsaV3_1G012020	Cucurbita maxima (Rimu)	cmacucB0515
CsaV3_1G012020	Cucurbita maxima (Rimu)	cmacucB1005
CsaV3_1G012020	Cucurbita moschata (Rifu)	cmocucB0000
CsaV3_1G012020	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G012020	Cucurbita moschata (Rifu)	cmocucB0368
CsaV3_1G012020	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G012020	Cucurbita moschata (Rifu)	cmocucB0503
CsaV3_1G012020	Cucurbita moschata (Rifu)	cmocucB0989
CsaV3_1G012020	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G012020	Cucurbita pepo (Zucchini)	cpecucB0059
CsaV3_1G012020	Cucurbita pepo (Zucchini)	cpecucB0244
CsaV3_1G012020	Cucurbita pepo (Zucchini)	cpecucB0585
CsaV3_1G012020	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G012020	Cucurbita pepo (Zucchini)	cpecucB0668
CsaV3_1G012020	Cucurbita pepo (Zucchini)	cpecucB0953
CsaV3_1G012020	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G012020	Wild cucumber (PI 183967)	cpicucB129
CsaV3_1G012020	Wild cucumber (PI 183967)	cpicucB310
CsaV3_1G012020	Bottle gourd (USVL1VR-Ls)	cuclsiB065
CsaV3_1G012020	Bottle gourd (USVL1VR-Ls)	cuclsiB020
CsaV3_1G012020	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G012020	Bottle gourd (USVL1VR-Ls)	cuclsiB056
CsaV3_1G012020	Melon (DHL92) v3.5.1	cucmeB083
CsaV3_1G012020	Melon (DHL92) v3.5.1	cucmeB092
CsaV3_1G012020	Melon (DHL92) v3.6.1	cucmedB078
CsaV3_1G012020	Melon (DHL92) v3.6.1	cucmedB085
CsaV3_1G012020	Watermelon (Charleston Gray)	cucwcgB012
CsaV3_1G012020	Watermelon (Charleston Gray)	cucwcgB015
CsaV3_1G012020	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G012020	Watermelon (97103) v1	cucwmB013
CsaV3_1G012020	Watermelon (97103) v1	cucwmB050
CsaV3_1G012020	Watermelon (97103) v1	cucwmB088
CsaV3_1G012020	Watermelon (97103) v2	cucwmbB001
CsaV3_1G012020	Watermelon (97103) v2	cucwmbB015
CsaV3_1G012020	Watermelon (97103) v2	cucwmbB022
CsaV3_1G012020	Watermelon (97103) v2	cucwmbB030
CsaV3_1G012020	Wax gourd	cucwgoB000
CsaV3_1G012020	Wax gourd	cucwgoB026
CsaV3_1G012020	Cucumber (Chinese Long) v3	cuccucB020
CsaV3_1G012020	Cucumber (Chinese Long) v3	cuccucB044