CsaV3_1G011150 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCATGGAAGCTCCCACGAATATTTTGATACACCCTTCCCTTTCTGCACCAATTTCACCTTCTCACCAAACTCTACTTACCTCTCTTCACCTCCTAAATGCTTCCGCCTTTGATCCTCCAACTCCAAATACTTTTCCTCCACCTCCTCTGGATGCGCCTCCTCCAGCTCAATCTTCGACGAAATCGAACCCATCTCCCTCACCTTCTTCCTCGCTCTCCTCTCCTTCCACGCCACTACCACCCCCTACCTCGCGTCGTTCACCAATTTCAGGTTATATAACTCATTTCTTCTCAAATTTAAGTGCTCCTAATCTTTTAGGTTTATATTTATTTTCTTACGCACGGATCTTGCTCAGCCAGTTACCCGACCAAAATTAAACTTATTTCATTATATATATTTTGTTGAACAGTGGGAAACAGATCCGCACCAGTGCAAATTGTGGCGATTGTGATTGCAACTACAATTATTTTCATAGGTGCACTTGTTGGGGGATTTTGTTACCTACGCCGACGAGTGTTACAAAATCCCGTATATTAGCTTCTGGATTTCTCCTCTTCTTTTACTCTTTTTGTATTCGTAAAAATATAGCGACTCATTTTTTTTTTTTTGGTTTTCCCTTTTCCTTAAATATCAAATCTTTAATAATAACTCCATTTTCATTTCTCTTCTGTACTTCTGTTCCCTTTCTTGTCAAAGTCTGTAATGCCTATATATATTTTGTATATCTTCCATTGGCTAATACATAGTGAAATATATTACTTTCTGCCTTCTGTTAAACTGAATGACAAAAATTTTGGACTATGGAGAGACATGGTTCTTGCTGTTCTTCGAGGTCAAAAGGTCGATGGATATGTTCTTGGCACAAAAACTCAACCACCTTAGTCCTTAAAGTCTAATGGTGAAGTTGGTTCTTCTACTTCAATTATTAATCCAACCTTTTAAGAATGGACAACAACAAACTAAGCTCTCCTTGGATGGTTACTTGGTTCGATGACCCTAGCCGCTTGTGGCATCAGAGGTCGTTAATCTGATAATGTCAAGAGAGTTATGGTTGGCCTTAGAGGAACTCTATGGTGCAACTAGCAAGAGTCCATATAAATCAATTGGGATAATCCTTCAAAATACTAGAAAAGGAACAATGAGAATGACAGAATATCTATCCATGATGAAACAAACATTGGAAAATATGCAACTAGCAGGATCACCAATTTCTCATGAAGATTTATTCTCTTATGTCTTAGTAGGCCTTGACGTCGAATATATTCCAATTGTGTGTGATATAGAAGGTAAGAACTCTCCAACCTGGCATGATGTTTAA ATGGCCATGGAAGCTCCCACGAATATTTTGATACACCCTTCCCTTTCTGCACCAATTTCACCTTCTCACCAAACTCTACTTACCTCTCTTCACCTCCTAAATGCTTCCGCCTTTGATCCTCCAACTCCAAATACTTTTCCTCCACCTCCTCTGGATGCGCCTCCTCCAGCTCAATCTTCGACGAAATCGAACCCATCTCCCTCACCTTCTTCCTCGCTCTCCTCTCCTTCCACGCCACTACCACCCCCTACCTCGCGTCGTTCACCAATTTCAGTGGGAAACAGATCCGCACCAGTGCAAATTGTGGCGATTGTGATTGCAACTACAATTATTTTCATAGGTGCACTTGTTGGGGGATTTTGTTACCTACGCCGACGAGTGTTACAAAATCCCCCGCTTGTGGCATCAGAGGTCGTTAATCTGATAATGTCAAGAGAGTTATGGTTGGCCTTAGAGGAACTCTATGGTGCAACTAGCAAGAGTCCATATAAATCAATTGGGATAATCCTTCAAAATACTAGAAAAGGAACAATGAGAATGACAGAATATCTATCCATGATGAAACAAACATTGGAAAATATGCAACTAGCAGGATCACCAATTTCTCATGAAGATTTATTCTCTTATGTCTTAGTAGGCCTTGACGTCGAATATATTCCAATTGTGTGTGATATAGAAGGTAAGAACTCTCCAACCTGGCATGATGTTTAA ATGGCCATGGAAGCTCCCACGAATATTTTGATACACCCTTCCCTTTCTGCACCAATTTCACCTTCTCACCAAACTCTACTTACCTCTCTTCACCTCCTAAATGCTTCCGCCTTTGATCCTCCAACTCCAAATACTTTTCCTCCACCTCCTCTGGATGCGCCTCCTCCAGCTCAATCTTCGACGAAATCGAACCCATCTCCCTCACCTTCTTCCTCGCTCTCCTCTCCTTCCACGCCACTACCACCCCCTACCTCGCGTCGTTCACCAATTTCAGTGGGAAACAGATCCGCACCAGTGCAAATTGTGGCGATTGTGATTGCAACTACAATTATTTTCATAGGTGCACTTGTTGGGGGATTTTGTTACCTACGCCGACGAGTGTTACAAAATCCCCCGCTTGTGGCATCAGAGGTCGTTAATCTGATAATGTCAAGAGAGTTATGGTTGGCCTTAGAGGAACTCTATGGTGCAACTAGCAAGAGTCCATATAAATCAATTGGGATAATCCTTCAAAATACTAGAAAAGGAACAATGAGAATGACAGAATATCTATCCATGATGAAACAAACATTGGAAAATATGCAACTAGCAGGATCACCAATTTCTCATGAAGATTTATTCTCTTATGTCTTAGTAGGCCTTGACGTCGAATATATTCCAATTGTGTGTGATATAGAAGGTAAGAACTCTCCAACCTGGCATGATGTTTAA MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFPPPPLDAPPPAQSSTKSNPSPSPSSSLSSPSTPLPPPTSRRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGFCYLRRRVLQNPPLVASEVVNLIMSRELWLALEELYGATSKSPYKSIGIILQNTRKGTMRMTEYLSMMKQTLENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIEGKNSPTWHDV
BLAST of CsaV3_1G011150 vs. NCBI nr
Match: KGN64559.1 (hypothetical protein Csa_1G064810 [Cucumis sativus]) HSP 1 Score: 370.9 bits (951), Expect = 3.2e-99 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]) HSP 1 Score: 117.5 bits (293), Expect = 6.3e-23 Identity = 53/105 (50.48%), Postives = 78/105 (74.29%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]) HSP 1 Score: 117.5 bits (293), Expect = 6.3e-23 Identity = 53/105 (50.48%), Postives = 78/105 (74.29%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia]) HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18 Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. NCBI nr
Match: XP_022142770.1 (uncharacterized protein LOC111012809 [Momordica charantia]) HSP 1 Score: 97.1 bits (240), Expect = 8.8e-17 Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. TrEMBL
Match: tr|A0A0A0LUB0|A0A0A0LUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 2.1e-99 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. TrEMBL
Match: tr|A0A151U7R7|A0A151U7R7_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_008029 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12 Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. TrEMBL
Match: tr|A0A2K3MLQ3|A0A2K3MLQ3_TRIPR (Glutamate receptor OS=Trifolium pratense OX=57577 GN=L195_g047885 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12 Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. TrEMBL
Match: tr|A0A1S3EII4|A0A1S3EII4_CICAR (uncharacterized protein LOC101501674 OS=Cicer arietinum OX=3827 GN=LOC101501674 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11 Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 0
BLAST of CsaV3_1G011150 vs. TrEMBL
Match: tr|A0A2K3NEN7|A0A2K3NEN7_TRIPR (Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024786 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11 Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |