CsGy1G010980 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G010980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionDynamin
LocationChr1 : 6893787 .. 6894325 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGAAGCTCCCACGAATATTTTGATACACCCTTCCCTTTCTGCACCAATTTCACCTTCTCACCAAACTCTACTTACCTCTCTTCACCTCCTAAATGCTTCCGCCTTTGATCCTCCAACTCCAAATACTTTTCCTCCACCTCCTCTGGATGCGCCTCCTCCAGCCCAATCTTCGACGAAATCGAACCCATCTCCCTCACCTTCTTCCTCGCTCTCCTCTCCTTCCACGCCACTACCACCCCCTACTTCGCGTCGTTCACCAATTTCAGGTTATATAACTCATTTCTTCTCAAATTTAAGTGCTCCTAAACTTTTAGGTTTATATTTATTTTCTTACGCACGGATCTTGCTCAGCCAGTTACCCGACCAAAATTAAACTTATTTCATTATATATTTTGTTGAACAGTGGGAAACAGATCCGCACCAGTGCAAATTGTGGCGATTGTGATTGCAACTACAATTATTTTCATAGGTGCACTTGTTGGGGGATTTTGTTACCTACGCCGACGAGTGTTACAAAATCCCGTATATTAG

mRNA sequence

ATGGCCATGGAAGCTCCCACGAATATTTTGATACACCCTTCCCTTTCTGCACCAATTTCACCTTCTCACCAAACTCTACTTACCTCTCTTCACCTCCTAAATGCTTCCGCCTTTGATCCTCCAACTCCAAATACTTTTCCTCCACCTCCTCTGGATGCGCCTCCTCCAGCCCAATCTTCGACGAAATCGAACCCATCTCCCTCACCTTCTTCCTCGCTCTCCTCTCCTTCCACGCCACTACCACCCCCTACTTCGCGTCGTTCACCAATTTCAGTGGGAAACAGATCCGCACCAGTGCAAATTGTGGCGATTGTGATTGCAACTACAATTATTTTCATAGGTGCACTTGTTGGGGGATTTTGTTACCTACGCCGACGAGTGTTACAAAATCCCGTATATTAG

Coding sequence (CDS)

ATGGCCATGGAAGCTCCCACGAATATTTTGATACACCCTTCCCTTTCTGCACCAATTTCACCTTCTCACCAAACTCTACTTACCTCTCTTCACCTCCTAAATGCTTCCGCCTTTGATCCTCCAACTCCAAATACTTTTCCTCCACCTCCTCTGGATGCGCCTCCTCCAGCCCAATCTTCGACGAAATCGAACCCATCTCCCTCACCTTCTTCCTCGCTCTCCTCTCCTTCCACGCCACTACCACCCCCTACTTCGCGTCGTTCACCAATTTCAGTGGGAAACAGATCCGCACCAGTGCAAATTGTGGCGATTGTGATTGCAACTACAATTATTTTCATAGGTGCACTTGTTGGGGGATTTTGTTACCTACGCCGACGAGTGTTACAAAATCCCGTATATTAG

Protein sequence

MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFPPPPLDAPPPAQSSTKSNPSPSPSSSLSSPSTPLPPPTSRRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGFCYLRRRVLQNPVY
Homology
[Close]
BLAST of CsGy1G010980 vs. NCBI nr
Match: KGN64559.1 (hypothetical protein Csa_1G064810 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 9.6e-37
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFXXXXXXXXXXXXXX 60
           MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFXXXXXXXXXXXXXX
Sbjct: 27  MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFXXXXXXXXXXXXXX 86

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGF 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGF
Sbjct: 87  XXXXXXXXXXXXXXXXXXXXXXXXXXRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGF 146

Query: 121 CYLRRRVLQNP 132
           CYLRRRVLQNP
Sbjct: 147 CYLRRRVLQNP 157

[Close]
BLAST of CsGy1G010980 vs. TrEMBL
Match: tr|A0A0A0LUB0|A0A0A0LUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.3e-37
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFXXXXXXXXXXXXXX 60
           MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFXXXXXXXXXXXXXX
Sbjct: 27  MAMEAPTNILIHPSLSAPISPSHQTLLTSLHLLNASAFDPPTPNTFXXXXXXXXXXXXXX 86

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGF 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGF
Sbjct: 87  XXXXXXXXXXXXXXXXXXXXXXXXXXRSPISVGNRSAPVQIVAIVIATTIIFIGALVGGF 146

Query: 121 CYLRRRVLQNP 132
           CYLRRRVLQNP
Sbjct: 147 CYLRRRVLQNP 157

The following BLAST results are available for this feature:
BLAST of CsGy1G010980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64559.19.6e-37100.00hypothetical protein Csa_1G064810 [Cucumis sativus][more]
BLAST of CsGy1G010980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G010980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G010980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUB0|A0A0A0LUB0_CUCSA6.3e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G010980.1CsGy1G010980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..93

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G010980CsaV3_1G011150Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G010980Cucumber (Gy14) v2cgybcgybB035
CsGy1G010980Cucurbita maxima (Rimu)cgybcmaB074
CsGy1G010980Cucurbita maxima (Rimu)cgybcmaB093
CsGy1G010980Cucurbita maxima (Rimu)cgybcmaB126
CsGy1G010980Cucurbita maxima (Rimu)cgybcmaB142
CsGy1G010980Cucurbita moschata (Rifu)cgybcmoB068
CsGy1G010980Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G010980Cucurbita moschata (Rifu)cgybcmoB116
CsGy1G010980Cucurbita moschata (Rifu)cgybcmoB133
CsGy1G010980Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G010980Cucurbita pepo (Zucchini)cgybcpeB023
CsGy1G010980Cucurbita pepo (Zucchini)cgybcpeB070
CsGy1G010980Cucumber (Chinese Long) v2cgybcuB001
CsGy1G010980Cucumber (Chinese Long) v2cgybcuB039
CsGy1G010980Bottle gourd (USVL1VR-Ls)cgyblsiB015
CsGy1G010980Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G010980Melon (DHL92) v3.5.1cgybmeB022
CsGy1G010980Melon (DHL92) v3.5.1cgybmeB076
CsGy1G010980Melon (DHL92) v3.6.1cgybmedB020
CsGy1G010980Melon (DHL92) v3.6.1cgybmedB072
CsGy1G010980Watermelon (Charleston Gray)cgybwcgB013
CsGy1G010980Watermelon (Charleston Gray)cgybwcgB033
CsGy1G010980Watermelon (97103) v1cgybwmB010
CsGy1G010980Watermelon (97103) v1cgybwmB044
CsGy1G010980Wild cucumber (PI 183967)cgybcpiB001
CsGy1G010980Wild cucumber (PI 183967)cgybcpiB037
CsGy1G010980Silver-seed gourdcarcgybB0637
CsGy1G010980Silver-seed gourdcarcgybB0788
CsGy1G010980Silver-seed gourdcarcgybB0919
CsGy1G010980Silver-seed gourdcarcgybB0992
CsGy1G010980Cucumber (Chinese Long) v3cgybcucB045
CsGy1G010980Watermelon (97103) v2cgybwmbB002
CsGy1G010980Watermelon (97103) v2cgybwmbB032
CsGy1G010980Wax gourdcgybwgoB020
CsGy1G010980Wax gourdcgybwgoB048