CsaV3_1G010940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6780655 .. 6781096 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGAGGAACACCACTCATAGAATATACTTTTGAATTCATAGATATAACATCAAATTTGATTACATTCACAGAGGCACAGAGTATCTATAGAAACAAAAATTTTGAGTTAACTATATCCATCCAATGGTCCAATTCAAAACCAGAGCTTCTCTTTGTGCGGCCATGGTTGAATTGAAGCTTCTCCCGATAGTATATAATGCGGTGCTTGCTCAGAGAAGGAGCATACGTGGGAGGGAACATTCCCTAAGTCTTTGCTGGACAAATTTGAATGGGCGAATGGATATACAAACAGAAAGGTTTGGGCTTTACCTGAAGATTATCATCGCACTCTGAAGAGAACTCCAAAGCTTTCTTTTCCGAACTTTGATGGGTCACAATGTCATCGCAGTTGCGTCAAGGAAAGTGATCTAACCAAGCAGCACCCCAGTGTTATATGA

mRNA sequence

ATGCTTCGAGGAACACCACTCATAGAATATACTTTTGAATTCATAGATATAACATCAAATTTGATTACATTCACAGAGGCACAGAAGAAGGAGCATACGTGGGAGGGAACATTCCCTAAGTCTTTGCTGGACAAATTTGAATGGGCGAATGGATATACAAACAGAAAGGTTTGGGCTTTACCTGAAGATTATCATCGCACTCTGAAGAGAACTCCAAAGCTTTCTTTTCCGAACTTTGATGGGTCACAATGTCATCGCAGTTGCGTCAAGGAAAGTGATCTAACCAAGCAGCACCCCAGTGTTATATGA

Coding sequence (CDS)

ATGCTTCGAGGAACACCACTCATAGAATATACTTTTGAATTCATAGATATAACATCAAATTTGATTACATTCACAGAGGCACAGAAGAAGGAGCATACGTGGGAGGGAACATTCCCTAAGTCTTTGCTGGACAAATTTGAATGGGCGAATGGATATACAAACAGAAAGGTTTGGGCTTTACCTGAAGATTATCATCGCACTCTGAAGAGAACTCCAAAGCTTTCTTTTCCGAACTTTGATGGGTCACAATGTCATCGCAGTTGCGTCAAGGAAAGTGATCTAACCAAGCAGCACCCCAGTGTTATATGA

Protein sequence

MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWALPEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI
Homology
[Close]
BLAST of CsaV3_1G010940 vs. NCBI nr
Match: KGN64540.1 (hypothetical protein Csa_1G063640 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 7.9e-55
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60
           MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL
Sbjct: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60

Query: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 103
           PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI
Sbjct: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 102

[Close]
BLAST of CsaV3_1G010940 vs. Swiss-Prot
Match: sp|Q7XPY7|BGL14_ORYSJ (Probable inactive beta-glucosidase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU14 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-05
Identity = 35/84 (41.67%), Postives = 42/84 (50.00%), Query Frame = 0 

Query: 17  ITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWALPEDYHRTLKRTPKLSF 76
           I   LI+   A +K     G F  SLLD FEW  GYT R  + L   +++TLKRTPKLS 
Sbjct: 431 IQGYLISLASAIRKGADVRGYFVWSLLDDFEWNFGYTLR--FGLYHVHYKTLKRTPKLSV 490

Query: 77  PNF----DGSQCHRSCVKESDLTK 97
             +     GS   R    ES L K
Sbjct: 491 DWYRKFLTGSLLRRKFRDESQLHK 512

[Close]
BLAST of CsaV3_1G010940 vs. TrEMBL
Match: tr|A0A0A0LRM1|A0A0A0LRM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063640 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.2e-55
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60
           MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL
Sbjct: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60

Query: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 103
           PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI
Sbjct: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 102

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010940 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64540.17.9e-55100.00hypothetical protein Csa_1G063640 [Cucumis sativus][more]
BLAST of CsaV3_1G010940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7XPY7|BGL14_ORYSJ6.7e-0541.67Probable inactive beta-glucosidase 14 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
BLAST of CsaV3_1G010940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRM1|A0A0A0LRM1_CUCSA5.2e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063640 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017853Glycoside_hydrolase_SF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010940.1CsaV3_1G010940.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.20.20.80coord: 8..82
e-value: 1.1E-6
score: 29.4
IPR017853Glycoside hydrolase superfamilySUPERFAMILYSSF51445(Trans)glycosidasescoord: 20..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010940CsGy1G010760Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010940Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010940Silver-seed gourdcarcucB0529
CsaV3_1G010940Silver-seed gourdcarcucB0672
CsaV3_1G010940Silver-seed gourdcarcucB0969
CsaV3_1G010940Silver-seed gourdcarcucB1049
CsaV3_1G010940Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010940Cucumber (Gy14) v1cgycucB018
CsaV3_1G010940Cucumber (Gy14) v1cgycucB089
CsaV3_1G010940Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010940Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010940Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010940Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010940Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010940Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010940Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010940Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010940Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010940Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010940Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010940Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010940Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010940Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010940Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010940Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010940Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010940Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010940Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010940Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010940Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010940Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010940Watermelon (97103) v1cucwmB013
CsaV3_1G010940Watermelon (97103) v1cucwmB050
CsaV3_1G010940Watermelon (97103) v2cucwmbB001
CsaV3_1G010940Watermelon (97103) v2cucwmbB030
CsaV3_1G010940Wax gourdcucwgoB037
CsaV3_1G010940Wax gourdcucwgoB026
CsaV3_1G010940Wax gourdcucwgoB053