CsaV3_1G008770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G008770
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5476606 .. 5476883 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACAGTACGGAATTTGAAAAAGATGTTCTGACTGCGACTGTGACTTAGCAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

mRNA sequence

ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACACAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

Coding sequence (CDS)

ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACACAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

Protein sequence

MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLFTLTVFLRHPDVAHLSRL
Homology
[Close]
BLAST of CsaV3_1G008770 vs. NCBI nr
Match: KGN64337.1 (hypothetical protein Csa_1G046320 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 4.6e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60
          MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF
Sbjct: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60

Query: 61 TLTVFLRHPDVAHLSRL 78
          TLTVFLRHPDVAHLSRL
Sbjct: 61 TLTVFLRHPDVAHLSRL 77

[Close]
BLAST of CsaV3_1G008770 vs. TrEMBL
Match: tr|A0A0A0LU60|A0A0A0LU60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046320 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60
          MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF
Sbjct: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60

Query: 61 TLTVFLRHPDVAHLSRL 78
          TLTVFLRHPDVAHLSRL
Sbjct: 61 TLTVFLRHPDVAHLSRL 77

The following BLAST results are available for this feature:
BLAST of CsaV3_1G008770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64337.14.6e-39100.00hypothetical protein Csa_1G046320 [Cucumis sativus][more]
BLAST of CsaV3_1G008770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LU60|A0A0A0LU60_CUCSA3.0e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G008770.1CsaV3_1G008770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G008770CsGy1G008680Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G008770Cucumber (Chinese Long) v3cuccucB002
CsaV3_1G008770Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G008770Cucumber (Chinese Long) v3cuccucB040
CsaV3_1G008770Silver-seed gourdcarcucB0529
CsaV3_1G008770Silver-seed gourdcarcucB0655
CsaV3_1G008770Silver-seed gourdcarcucB1048
CsaV3_1G008770Cucumber (Gy14) v2cgybcucB009
CsaV3_1G008770Cucumber (Gy14) v2cgybcucB206
CsaV3_1G008770Cucumber (Gy14) v1cgycucB109
CsaV3_1G008770Cucumber (Gy14) v1cgycucB316
CsaV3_1G008770Cucumber (Gy14) v1cgycucB433
CsaV3_1G008770Cucumber (Gy14) v1cgycucB595
CsaV3_1G008770Cucurbita maxima (Rimu)cmacucB0074
CsaV3_1G008770Cucurbita maxima (Rimu)cmacucB0121
CsaV3_1G008770Cucurbita maxima (Rimu)cmacucB0186
CsaV3_1G008770Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G008770Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G008770Cucurbita maxima (Rimu)cmacucB0484
CsaV3_1G008770Cucurbita moschata (Rifu)cmocucB0061
CsaV3_1G008770Cucurbita moschata (Rifu)cmocucB0105
CsaV3_1G008770Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G008770Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G008770Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G008770Cucurbita pepo (Zucchini)cpecucB0435
CsaV3_1G008770Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G008770Cucurbita pepo (Zucchini)cpecucB0801
CsaV3_1G008770Wild cucumber (PI 183967)cpicucB001
CsaV3_1G008770Wild cucumber (PI 183967)cpicucB013
CsaV3_1G008770Wild cucumber (PI 183967)cpicucB074
CsaV3_1G008770Wild cucumber (PI 183967)cpicucB258
CsaV3_1G008770Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G008770Bottle gourd (USVL1VR-Ls)cuclsiB057
CsaV3_1G008770Bottle gourd (USVL1VR-Ls)cuclsiB075
CsaV3_1G008770Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G008770Melon (DHL92) v3.5.1cucmeB002
CsaV3_1G008770Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G008770Melon (DHL92) v3.5.1cucmeB047
CsaV3_1G008770Melon (DHL92) v3.5.1cucmeB066
CsaV3_1G008770Melon (DHL92) v3.6.1cucmedB002
CsaV3_1G008770Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G008770Melon (DHL92) v3.6.1cucmedB044
CsaV3_1G008770Melon (DHL92) v3.6.1cucmedB062
CsaV3_1G008770Watermelon (Charleston Gray)cucwcgB014
CsaV3_1G008770Watermelon (Charleston Gray)cucwcgB067
CsaV3_1G008770Watermelon (Charleston Gray)cucwcgB079
CsaV3_1G008770Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G008770Watermelon (97103) v1cucwmB041
CsaV3_1G008770Watermelon (97103) v1cucwmB059
CsaV3_1G008770Watermelon (97103) v1cucwmB096
CsaV3_1G008770Watermelon (97103) v2cucwmbB000
CsaV3_1G008770Watermelon (97103) v2cucwmbB068
CsaV3_1G008770Watermelon (97103) v2cucwmbB056
CsaV3_1G008770Watermelon (97103) v2cucwmbB088
CsaV3_1G008770Wax gourdcucwgoB033
CsaV3_1G008770Wax gourdcucwgoB073
CsaV3_1G008770Wax gourdcucwgoB100