CsaV3_1G005920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G005920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionH/ACA ribonucleoprotein complex subunit 4
Locationchr1 : 3796870 .. 3798573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAGCATAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCACCCAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAGTGGCCTATTCTTCTGAAAAACTATGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCTTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCTAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTTGATCCGAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGAACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGTTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATCATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAATGATATTGGTGCTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATCGCAGAGATGACTACTGCAGTGATGGCAACCTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGACTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGGTGGGGACGTTTTGGTTGCAAGTGCTTTCGTTTCCGACTCTGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGATGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGATACTGCTGAAGAACCTTCTAATGAGGAGATTGTTGAGAATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGCTACACCTGAGACACCAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAATCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAA

mRNA sequence

ATGTCGAAGCATAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCACCCAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAGTGGCCTATTCTTCTGAAAAACTATGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCTTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCTAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTTGATCCGAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGAACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGTTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATCATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAATGATATTGGTGCTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATCGCAGAGATGACTACTGCAGTGATGGCAACCTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGACTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGGTGGGGACGTTTTGGTTGCAAGTGCTTTCGTTTCCGACTCTGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGATGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGATACTGCTGAAGAACCTTCTAATGAGGAGATTGTTGAGAATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGCTACACCTGAGACACCAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAATCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAA

Coding sequence (CDS)

ATGTCGAAGCATAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCACCCAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAGTGGCCTATTCTTCTGAAAAACTATGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCTTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCTAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTTGATCCGAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGAACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGTTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATCATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAATGATATTGGTGCTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATCGCAGAGATGACTACTGCAGTGATGGCAACCTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGACTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGGTGGGGACGTTTTGGTTGCAAGTGCTTTCGTTTCCGACTCTGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGATGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGATACTGCTGAAGAACCTTCTAATGAGGAGATTGTTGAGAATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGCTACACCTGAGACACCAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAATCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAA

Protein sequence

MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDTAEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE
Homology
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BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_011650148.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus])

HSP 1 Score: 869.8 bits (2246), Expect = 5.2e-249
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0 

Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 DSATAKPTAAEESGK 436
           DSATAKPTAAEESGK
Sbjct: 421 DSATAKPTAAEESGK 435

[Close]
BLAST of CsaV3_1G005920 vs. NCBI nr
Match: KGN64045.1 (hypothetical protein Csa_1G039120 [Cucumis sativus])

HSP 1 Score: 857.8 bits (2215), Expect = 2.0e-245
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0 

Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 DSATAKPT 429
           DSATAKPT
Sbjct: 421 DSATAKPT 428

[Close]
BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_008449192.1 (PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucumis melo])

HSP 1 Score: 856.7 bits (2212), Expect = 4.6e-245
Identity = 427/436 (97.94%), Postives = 431/436 (98.85%), Query Frame = 0 

Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVASAF +
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 DSATAKPTAAEESGKD 437
           +SATAKPTAAEESGKD
Sbjct: 421 ESATAKPTAAEESGKD 436

[Close]
BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_022941699.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata])

HSP 1 Score: 808.9 bits (2088), Expect = 1.1e-230
Identity = 402/435 (92.41%), Postives = 413/435 (94.94%), Query Frame = 0 

Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S  V SDEQP K+VADF+IKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVAS F SD
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFASD 437

Query: 422 SATAKPTAAEESGKD 437
           +AT K + A +  KD
Sbjct: 438 TATPKQSVAADEEKD 452

[Close]
BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_022971402.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 808.9 bits (2088), Expect = 1.1e-230
Identity = 402/435 (92.41%), Postives = 413/435 (94.94%), Query Frame = 0 

Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S  V+SDEQP K+VADF+IKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVAS F SD
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFASD 437

Query: 422 SATAKPTAAEESGKD 437
           +AT K   A +  KD
Sbjct: 438 TATPKQNVAADEEKD 452

[Close]
BLAST of CsaV3_1G005920 vs. TAIR10
Match: AT3G57150.1 (homologue of NAP57)

HSP 1 Score: 734.6 bits (1895), Expect = 4.7e-212
Identity = 356/412 (86.41%), Postives = 383/412 (92.96%), Query Frame = 0 

Query: 6   SKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYL 65
           SK       E    +  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+ 
Sbjct: 9   SKKKKQDKTENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHS 68

Query: 66  PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCID 125
           PLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCID
Sbjct: 69  PLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 128

Query: 126 RATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIR 185
           RATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIR
Sbjct: 129 RATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIR 188

Query: 186 TIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEK 245
           TIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE 
Sbjct: 189 TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGEN 248

Query: 246 DNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMI 305
           +NMVTMHDVMDAQ+ YDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMI
Sbjct: 249 NNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMI 308

Query: 306 PGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYP 365
           PGLLRFENDI  G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYP
Sbjct: 309 PGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 368

Query: 366 RKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASA 418
           RKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD ++A A
Sbjct: 369 RKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGA 420

[Close]
BLAST of CsaV3_1G005920 vs. TAIR10
Match: AT5G14460.1 (Pseudouridine synthase family protein)

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-20
Identity = 63/202 (31.19%), Postives = 98/202 (48.51%), Query Frame = 0 

Query: 79  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 138
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 139 KEYVCVARLHSAVPDV-----------------SKVARALETLTGAVFQRPPLISAVK-- 198
           K Y  V RL  A   +                   + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 199 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 247
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

[Close]
BLAST of CsaV3_1G005920 vs. Swiss-Prot
Match: sp|Q9LD90|CBF5_ARATH (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 734.6 bits (1895), Expect = 8.5e-211
Identity = 356/412 (86.41%), Postives = 383/412 (92.96%), Query Frame = 0 

Query: 6   SKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYL 65
           SK       E    +  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+ 
Sbjct: 9   SKKKKQDKTENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHS 68

Query: 66  PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCID 125
           PLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCID
Sbjct: 69  PLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 128

Query: 126 RATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIR 185
           RATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIR
Sbjct: 129 RATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIR 188

Query: 186 TIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEK 245
           TIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE 
Sbjct: 189 TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGEN 248

Query: 246 DNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMI 305
           +NMVTMHDVMDAQ+ YDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMI
Sbjct: 249 NNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMI 308

Query: 306 PGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYP 365
           PGLLRFENDI  G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYP
Sbjct: 309 PGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 368

Query: 366 RKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASA 418
           RKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD ++A A
Sbjct: 369 RKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGA 420

[Close]
BLAST of CsaV3_1G005920 vs. Swiss-Prot
Match: sp|Q5ZJH9|DKC1_CHICK (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 1.5e-170
Identity = 287/403 (71.22%), Postives = 345/403 (85.61%), Query Frame = 0 

Query: 3   KHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPS 62
           +   K S    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNV T HYTPLPS
Sbjct: 13  RKKDKRSLPDEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPS 72

Query: 63  GYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIV 122
           G  PLKR +++Y+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIV
Sbjct: 73  GANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 132

Query: 123 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQL 182
           CI+RATRLVKSQQ AGKEYV + RLH+A+   +++ARA+ETLTGA+FQRPPLI+AVKRQL
Sbjct: 133 CIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQL 192

Query: 183 RIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIL 242
           R+RTIYESKL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSGIL
Sbjct: 193 RVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGIL 252

Query: 243 GEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAK 302
           GE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAICYGAK
Sbjct: 253 GEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAK 312

Query: 303 LMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRD 362
           +M+PG+LR+E+ I   +E+V++TTKGEAI L IA MTTAV++TCDHGVVAKIKRV+M+RD
Sbjct: 313 IMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERD 372

Query: 363 TYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV 406
           TYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +  V
Sbjct: 373 TYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV 415

[Close]
BLAST of CsaV3_1G005920 vs. Swiss-Prot
Match: sp|Q9ESX5|DKC1_MOUSE (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 600.9 bits (1548), Expect = 1.5e-170
Identity = 288/429 (67.13%), Postives = 354/429 (82.52%), Query Frame = 0 

Query: 3   KHSSKSSAVSSDEQPPKEV---ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTP 62
           KH  K       E    E+    +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HYTP
Sbjct: 12  KHKKKKDRKPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTP 71

Query: 63  LPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGN 122
           LP G  PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG 
Sbjct: 72  LPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGC 131

Query: 123 LIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVK 182
           LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   ++++RALETLTGA+FQRPPLI+AVK
Sbjct: 132 LIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVK 191

Query: 183 RQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRS 242
           RQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRS
Sbjct: 192 RQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRS 251

Query: 243 GILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICY 302
           G++ EKD+MVTMHDV+DAQW YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICY
Sbjct: 252 GVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICY 311

Query: 303 GAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVM 362
           GAK+M+PGLLR+E+ I   +E+V++TTKGEAI + IA MTTAV++TCDHG+VAKIKRV+M
Sbjct: 312 GAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIM 371

Query: 363 DRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV--LPTGGDVLVASA 422
           +RDTYPRKWGLGP+AS KK +I +G LDKHGKP +NTP  W ++ +    +G + LV  A
Sbjct: 372 ERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTEA 431

Query: 423 FVSDSATAK 427
             +    A+
Sbjct: 432 VQAPQLAAE 440

[Close]
BLAST of CsaV3_1G005920 vs. Swiss-Prot
Match: sp|P40615|DKC1_RAT (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 596.3 bits (1536), Expect = 3.6e-169
Identity = 284/406 (69.95%), Postives = 346/406 (85.22%), Query Frame = 0 

Query: 3   KHSSKSSAVSSDEQPPKEV---ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTP 62
           KH  K       E    E+    DF+IKP+S    +DTSQWP+LLKN+DRLNVRT HYTP
Sbjct: 13  KHKKKKERKPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTP 72

Query: 63  LPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGN 122
           +P G  PLKR + EY+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG 
Sbjct: 73  IPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGC 132

Query: 123 LIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVK 182
           LIVCI+RATRLVKSQQ AGKEYV V RLH+A+   ++++RALETLTGA+FQRPPLI+AVK
Sbjct: 133 LIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVK 192

Query: 183 RQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRS 242
           RQLR+RTIYES+++EYD ++ L VFW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRS
Sbjct: 193 RQLRVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRS 252

Query: 243 GILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICY 302
           G++GE+D+MVTMHDV+DAQ+ YD+ +DESYLRRV+ PLE +LTS+KRLV+KDSAVNAICY
Sbjct: 253 GVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICY 312

Query: 303 GAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVM 362
           GAK+M+PGLLR+E+ I   +EVV++TTKGEA+ + IA MTTAV++TCDHGVVAKIKRV+M
Sbjct: 313 GAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIM 372

Query: 363 DRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV 406
           +RDTYPRKWGLGP+AS KK+LI +G LDKHG+P + TP  W R+ V
Sbjct: 373 ERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYV 418

[Close]
BLAST of CsaV3_1G005920 vs. Swiss-Prot
Match: sp|O60832|DKC1_HUMAN (H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3)

HSP 1 Score: 595.1 bits (1533), Expect = 8.1e-169
Identity = 282/406 (69.46%), Postives = 345/406 (84.98%), Query Frame = 0 

Query: 3   KHSSKSSAVSSDEQPPKEV---ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTP 62
           KH  K    S  E+   E+    +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HYTP
Sbjct: 12  KHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTP 71

Query: 63  LPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGN 122
           L  G  PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG 
Sbjct: 72  LACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGC 131

Query: 123 LIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVK 182
           LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   ++++RALETLTGA+FQRPPLI+AVK
Sbjct: 132 LIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVK 191

Query: 183 RQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRS 242
           RQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRS
Sbjct: 192 RQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRS 251

Query: 243 GILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICY 302
           G++ EKD+MVTMHDV+DAQW YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICY
Sbjct: 252 GVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICY 311

Query: 303 GAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVM 362
           GAK+M+PG+LR+E+ I   +E+V++TTKGEAI + IA MTTAV++TCDHG+VAKIKRV+M
Sbjct: 312 GAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIM 371

Query: 363 DRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV 406
           +RDTYPRKWGLGP+AS KK +I +G LDKHGKP ++TP  W +  V
Sbjct: 372 ERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYV 417

[Close]
BLAST of CsaV3_1G005920 vs. TrEMBL
Match: tr|A0A0A0LQ86|A0A0A0LQ86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039120 PE=4 SV=1)

HSP 1 Score: 857.8 bits (2215), Expect = 1.4e-245
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0 

Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 DSATAKPT 429
           DSATAKPT
Sbjct: 421 DSATAKPT 428

[Close]
BLAST of CsaV3_1G005920 vs. TrEMBL
Match: tr|A0A1S3BLH6|A0A1S3BLH6_CUCME (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491111 PE=4 SV=1)

HSP 1 Score: 856.7 bits (2212), Expect = 3.0e-245
Identity = 427/436 (97.94%), Postives = 431/436 (98.85%), Query Frame = 0 

Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVASAF +
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 DSATAKPTAAEESGKD 437
           +SATAKPTAAEESGKD
Sbjct: 421 ESATAKPTAAEESGKD 436

[Close]
BLAST of CsaV3_1G005920 vs. TrEMBL
Match: tr|A0A2P5FCR1|A0A2P5FCR1_9ROSA (tRNA pseudouridine synthase B family OS=Trema orientalis OX=63057 GN=TorRG33x02_087210 PE=4 SV=1)

HSP 1 Score: 768.1 bits (1982), Expect = 1.4e-218
Identity = 387/440 (87.95%), Postives = 403/440 (91.59%), Query Frame = 0 

Query: 3   KHSSKSSAVSS--------DEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRT 62
           KH SK  A  +         +   KE ADFMIKPQS+TP +DTSQWPILLKNYDRLNVRT
Sbjct: 14  KHRSKDEAPDTPKPVADLGSDPTQKEDADFMIKPQSYTPAIDTSQWPILLKNYDRLNVRT 73

Query: 63  GHYTPLPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDP 122
           GHYTPLPSGY PLKRPLAEYIRYGI+NLDKP+NPSSHEVVAWIKRILRV+KTGHSGTLDP
Sbjct: 74  GHYTPLPSGYSPLKRPLAEYIRYGIMNLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDP 133

Query: 123 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPL 182
           KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALETL+GAVFQRPPL
Sbjct: 134 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLSGAVFQRPPL 193

Query: 183 ISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQEL 242
           ISAVKRQLRIRTIYESKLLEYD DKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQEL
Sbjct: 194 ISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQEL 253

Query: 243 RRVRSGILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAV 302
           RRVRSGILGEKDNMVTMHDVMDAQW YDN++DESYLRRVIMPLEV+LTSYKRLVVKDSAV
Sbjct: 254 RRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVVKDSAV 313

Query: 303 NAICYGAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKI 362
           NAICYGAKLMIPGLLRFENDI AGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVA+I
Sbjct: 314 NAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVARI 373

Query: 363 KRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLV 422
           KRVVMDRDTYPRKWGLGPRASMKKKLI EGKLDKHGKPN NTPQEW RNLVLPTGGD +V
Sbjct: 374 KRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKPNGNTPQEWARNLVLPTGGDSVV 433

Query: 423 A--SAFVSDSATAKPTAAEE 433
           A  +A    +A  KPTA  E
Sbjct: 434 AGIAAASEPAAVEKPTAVVE 453

[Close]
BLAST of CsaV3_1G005920 vs. TrEMBL
Match: tr|A0A2C9UME4|A0A2C9UME4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G164400 PE=4 SV=1)

HSP 1 Score: 764.6 bits (1973), Expect = 1.6e-217
Identity = 379/436 (86.93%), Postives = 398/436 (91.28%), Query Frame = 0 

Query: 3   KHSSKSSAVSSDEQPPK------EVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGH 62
           KH  K++A + +E   K         DFMIKPQSFTP +DTSQWPILLKNYDRLNVRTGH
Sbjct: 13  KHKKKNTAQAMEEPDTKPKDTNDAAGDFMIKPQSFTPSIDTSQWPILLKNYDRLNVRTGH 72

Query: 63  YTPLPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKV 122
           YTPLPSGY PLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKV
Sbjct: 73  YTPLPSGYSPLKRPLVEYIRYGVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKV 132

Query: 123 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLIS 182
           TGNLIVCIDRATRLVKSQQGAGKEYVCVARLH  VPDV+KVARALETLTGAVFQRPPLIS
Sbjct: 133 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALETLTGAVFQRPPLIS 192

Query: 183 AVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRR 242
           AVKRQLRIRTIYESKLLEYD D+HLVVFWISCEAGTYVRT+CVHLGLILGVGGHMQELRR
Sbjct: 193 AVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 252

Query: 243 VRSGILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNA 302
           VRSGILGE+DNMVTMHDVMDAQW YDN++DESYLRRVIMPLEV+LTSYKRLVVKDSAVNA
Sbjct: 253 VRSGILGERDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNA 312

Query: 303 ICYGAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKR 362
           ICYGAKLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKR
Sbjct: 313 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKR 372

Query: 363 VVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVAS 422
           VVMDRDTYPRKWGLGPRASMKKKLI EGKLDKHGKPN NTPQEWMRNLVLPTGGD +VAS
Sbjct: 373 VVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKPNGNTPQEWMRNLVLPTGGDSIVAS 432

Query: 423 AFVSDSATAKPTAAEE 433
              +D    + +A  E
Sbjct: 433 LAAADEPAKEISAVNE 448

[Close]
BLAST of CsaV3_1G005920 vs. TrEMBL
Match: tr|A0A2P5D0R8|A0A2P5D0R8_PARAD (tRNA pseudouridine synthase B family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_106820 PE=4 SV=1)

HSP 1 Score: 764.2 bits (1972), Expect = 2.0e-217
Identity = 378/416 (90.87%), Postives = 395/416 (94.95%), Query Frame = 0 

Query: 17  PPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIR 76
           P ++ ADFMIKPQS+TP +DTSQWPILLKNYDRLNVRTGHYTPLPSGY PLKRPLAEYIR
Sbjct: 36  PTQKDADFMIKPQSYTPAIDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIR 95

Query: 77  YGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 136
           YGI+NLDKP+NPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 96  YGIMNLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 155

Query: 137 AGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 196
           AGKEYVCVARLHSAVPDV+KVARALETL+GAVFQRPPLISAVKRQLRIRTIYESKLLEYD
Sbjct: 156 AGKEYVCVARLHSAVPDVAKVARALETLSGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 215

Query: 197 ADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMD 256
            DKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMD
Sbjct: 216 PDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMD 275

Query: 257 AQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIG 316
           AQW YDN++DESYLRRVIMPLEV+LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDI 
Sbjct: 276 AQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIE 335

Query: 317 AGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 376
           AGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM
Sbjct: 336 AGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 395

Query: 377 KKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKPTAAEE 433
           KKKLI EGKLDKHGKPN NTPQEW RNLVLP GGD +VA      +A ++PT  E+
Sbjct: 396 KKKLIAEGKLDKHGKPNVNTPQEWARNLVLPPGGDSVVAGL----AAASEPTVVEK 447

The following BLAST results are available for this feature:
BLAST of CsaV3_1G005920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650148.15.2e-249100.00PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus][more]
KGN64045.12.0e-245100.00hypothetical protein Csa_1G039120 [Cucumis sativus][more]
XP_008449192.14.6e-24597.94PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucum... [more]
XP_022941699.11.1e-23092.41H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata][more]
XP_022971402.11.1e-23092.41H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima][more]
BLAST of CsaV3_1G005920 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57150.14.7e-21286.41homologue of NAP57[more]
AT5G14460.13.8e-2031.19Pseudouridine synthase family protein[more]
BLAST of CsaV3_1G005920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LD90|CBF5_ARATH8.5e-21186.41H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF... [more]
sp|Q5ZJH9|DKC1_CHICK1.5e-17071.22H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE... [more]
sp|Q9ESX5|DKC1_MOUSE1.5e-17067.13H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE... [more]
sp|P40615|DKC1_RAT3.6e-16969.95H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk... [more]
sp|O60832|DKC1_HUMAN8.1e-16969.46H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=... [more]
BLAST of CsaV3_1G005920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQ86|A0A0A0LQ86_CUCSA1.4e-245100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039120 PE=4 SV=1[more]
tr|A0A1S3BLH6|A0A1S3BLH6_CUCME3.0e-24597.94LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo O... [more]
tr|A0A2P5FCR1|A0A2P5FCR1_9ROSA1.4e-21887.95tRNA pseudouridine synthase B family OS=Trema orientalis OX=63057 GN=TorRG33x02_... [more]
tr|A0A2C9UME4|A0A2C9UME4_MANES1.6e-21786.93Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G164400 PE=4 SV=... [more]
tr|A0A2P5D0R8|A0A2P5D0R8_PARAD2.0e-21790.87tRNA pseudouridine synthase B family OS=Parasponia andersonii OX=3476 GN=PanWU01... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf
IPR015947PUA-like_sf
IPR032819TruB_C
IPR002501PsdUridine_synth_N
IPR004521Uncharacterised_CHP00451
IPR004802tRNA_PsdUridine_synth_B_fam
IPR002478PUA
IPR012960Dyskerin-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0006396 RNA processing
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0001510 RNA methylation
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
cellular_component GO:0009506 plasmodesma
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G005920.1CsaV3_1G005920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012960Dyskerin-likeSMARTSM01136DKCLD_2coord: 36..94
e-value: 1.4E-33
score: 127.6
IPR012960Dyskerin-likePFAMPF08068DKCLDcoord: 37..94
e-value: 1.5E-29
score: 101.7
IPR002478PUA domainSMARTSM00359pua_5coord: 285..359
e-value: 3.7E-24
score: 96.2
IPR002478PUA domainPFAMPF01472PUAcoord: 285..357
e-value: 6.9E-21
score: 73.9
IPR002478PUA domainPROSITEPS50890PUAcoord: 284..359
score: 19.008
NoneNo IPR availableGENE3DG3DSA:2.30.130.70coord: 277..368
e-value: 7.7E-168
score: 559.6
coord: 39..69
e-value: 7.7E-168
score: 559.6
NoneNo IPR availableGENE3DG3DSA:3.30.2350.10coord: 70..276
e-value: 7.7E-168
score: 559.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..530
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 421..567
NoneNo IPR availableCDDcd02572PseudoU_synth_hDyskerincoord: 76..258
e-value: 1.60015E-133
score: 388.543
IPR004802tRNA pseudouridine synthase B familyTIGRFAMTIGR00425TIGR00425coord: 44..369
e-value: 1.4E-160
score: 531.6
IPR004802tRNA pseudouridine synthase B familyPANTHERPTHR23127CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5coord: 4..503
IPR004521Uncharacterised domain CHP00451TIGRFAMTIGR00451TIGR00451coord: 281..356
e-value: 2.7E-8
score: 32.0
IPR002501Pseudouridine synthase II, N-terminalPFAMPF01509TruB_Ncoord: 98..214
e-value: 2.3E-19
score: 70.1
IPR032819tRNA pseudouridylate synthase B, C-terminalPFAMPF16198TruB_C_2coord: 215..281
e-value: 6.5E-23
score: 80.5
IPR015947PUA-like superfamilySUPERFAMILYSSF88697PUA domain-likecoord: 284..365
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILYSSF55120Pseudouridine synthasecoord: 37..282

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G005920CSPI01G06060Wild cucumber (PI 183967)cpicucB001
CsaV3_1G005920Cucsa.113160Cucumber (Gy14) v1cgycucB143
CsaV3_1G005920CsGy1G005770Cucumber (Gy14) v2cgybcucB002
CsaV3_1G005920Cla018571Watermelon (97103) v1cucwmB070
CsaV3_1G005920MELO3C002022Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G005920ClCG04G011850Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G005920Lsi02G001140Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G005920MELO3C002022.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G005920Cla97C04G078760Watermelon (97103) v2cucwmbB054
CsaV3_1G005920Bhi08G000925Wax gourdcucwgoB052
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G005920Watermelon (97103) v2cucwmbB058
CsaV3_1G005920Watermelon (97103) v2cucwmbB078
CsaV3_1G005920Wax gourdcucwgoB008
CsaV3_1G005920Wax gourdcucwgoB074
CsaV3_1G005920Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G005920Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G005920Cucumber (Chinese Long) v3cuccucB037
CsaV3_1G005920Cucumber (Chinese Long) v3cuccucB047
CsaV3_1G005920Silver-seed gourdcarcucB0115
CsaV3_1G005920Silver-seed gourdcarcucB0272
CsaV3_1G005920Silver-seed gourdcarcucB0418
CsaV3_1G005920Silver-seed gourdcarcucB0630
CsaV3_1G005920Cucumber (Gy14) v2cgybcucB004
CsaV3_1G005920Cucumber (Gy14) v2cgybcucB203
CsaV3_1G005920Cucumber (Gy14) v2cgybcucB200
CsaV3_1G005920Cucumber (Gy14) v2cgybcucB250
CsaV3_1G005920Cucumber (Gy14) v1cgycucB241
CsaV3_1G005920Cucumber (Gy14) v1cgycucB315
CsaV3_1G005920Cucumber (Gy14) v1cgycucB434
CsaV3_1G005920Cucumber (Gy14) v1cgycucB507
CsaV3_1G005920Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G005920Cucurbita maxima (Rimu)cmacucB0185
CsaV3_1G005920Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G005920Cucurbita maxima (Rimu)cmacucB0324
CsaV3_1G005920Cucurbita maxima (Rimu)cmacucB0479
CsaV3_1G005920Cucurbita maxima (Rimu)cmacucB0815
CsaV3_1G005920Cucurbita maxima (Rimu)cmacucB0816
CsaV3_1G005920Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G005920Cucurbita moschata (Rifu)cmocucB0170
CsaV3_1G005920Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G005920Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G005920Cucurbita moschata (Rifu)cmocucB0799
CsaV3_1G005920Cucurbita moschata (Rifu)cmocucB0800
CsaV3_1G005920Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G005920Cucurbita pepo (Zucchini)cpecucB0471
CsaV3_1G005920Cucurbita pepo (Zucchini)cpecucB0472
CsaV3_1G005920Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G005920Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G005920Wild cucumber (PI 183967)cpicucB003
CsaV3_1G005920Wild cucumber (PI 183967)cpicucB253
CsaV3_1G005920Wild cucumber (PI 183967)cpicucB256
CsaV3_1G005920Wild cucumber (PI 183967)cpicucB311
CsaV3_1G005920Bottle gourd (USVL1VR-Ls)cuclsiB059
CsaV3_1G005920Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G005920Bottle gourd (USVL1VR-Ls)cuclsiB093
CsaV3_1G005920Melon (DHL92) v3.5.1cucmeB001
CsaV3_1G005920Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G005920Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G005920Melon (DHL92) v3.5.1cucmeB062
CsaV3_1G005920Melon (DHL92) v3.6.1cucmedB001
CsaV3_1G005920Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G005920Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G005920Melon (DHL92) v3.6.1cucmedB059
CsaV3_1G005920Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G005920Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G005920Watermelon (Charleston Gray)cucwcgB099
CsaV3_1G005920Watermelon (97103) v1cucwmB011
CsaV3_1G005920Watermelon (97103) v1cucwmB043
CsaV3_1G005920Watermelon (97103) v1cucwmB107