CsaV3_1G004670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 2964181 .. 2964477 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGTGAGTACAATAATCAATGGTATATGTATATACTATGTATGGAATACCTGATCGTTCTGAGCTTTTCTGAATCATCTTTGTTTCTGAGTATGAATTTAAGGGGAGAGATGAAAAGGGGTTGTGAGAAAATCAGTTTGAAAGTGGATGGAGACAAAAGCTTGTTTTATAATTTAGTCGGATTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAA

mRNA sequence

ATGAACAGTGAGTACAATAATCAATGGTATATGTATATACTATGTATGGAATACCTGATCGTTCTGAGCTTTTCTGAATCATCTTTGTTTCTGAGTATGAATTTAAGGGGAGAGATGAAAAGGGGTTGTGAGAAAATCAGTTTGAAAGTGGATGGAGACAAAAGCTTGTTTTATAATTTAGTCGGATTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAA

Coding sequence (CDS)

ATGAACAGTGAGTACAATAATCAATGGTATATGTATATACTATGTATGGAATACCTGATCGTTCTGAGCTTTTCTGAATCATCTTTGTTTCTGAGTATGAATTTAAGGGGAGAGATGAAAAGGGGTTGTGAGAAAATCAGTTTGAAAGTGGATGGAGACAAAAGCTTGTTTTATAATTTAGTCGGATTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAA

Protein sequence

MNSEYNNQWYMYILCMEYLIVLSFSESSLFLSMNLRGEMKRGCEKISLKVDGDKSLFYNLVGFEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
Homology
[Close]
BLAST of CsaV3_1G004670 vs. NCBI nr
Match: KGN63912.1 (hypothetical protein Csa_1G025925 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MNSEYNNQWYMYILCMEYLIVLSFSESSLFLSMNLRGEMKRGCEKISLKVDGDKSLFYNL 60
          MNSEYNNQWYMYILCMEYLIVLSFSESSLFLSMNLRGEMKRGCEKISLKVDGDKSLFYNL
Sbjct: 1  MNSEYNNQWYMYILCMEYLIVLSFSESSLFLSMNLRGEMKRGCEKISLKVDGDKSLFYNL 60

Query: 61 VGFE 65
          VGFE
Sbjct: 61 VGFE 64

[Close]
BLAST of CsaV3_1G004670 vs. TrEMBL
Match: tr|A0A0A0LT02|A0A0A0LT02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025925 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MNSEYNNQWYMYILCMEYLIVLSFSESSLFLSMNLRGEMKRGCEKISLKVDGDKSLFYNL 60
          MNSEYNNQWYMYILCMEYLIVLSFSESSLFLSMNLRGEMKRGCEKISLKVDGDKSLFYNL
Sbjct: 1  MNSEYNNQWYMYILCMEYLIVLSFSESSLFLSMNLRGEMKRGCEKISLKVDGDKSLFYNL 60

Query: 61 VGFE 65
          VGFE
Sbjct: 61 VGFE 64

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004670 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63912.11.0e-27100.00hypothetical protein Csa_1G025925 [Cucumis sativus][more]
BLAST of CsaV3_1G004670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT02|A0A0A0LT02_CUCSA6.8e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025925 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004670.1CsaV3_1G004670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G004670CSPI01G04710Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G004670Cucumber (Gy14) v2cgybcucB002
CsaV3_1G004670Cucumber (Gy14) v1cgycucB143
CsaV3_1G004670Cucurbita maxima (Rimu)cmacucB0060
CsaV3_1G004670Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G004670Cucurbita moschata (Rifu)cmocucB0046
CsaV3_1G004670Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G004670Cucurbita pepo (Zucchini)cpecucB0444
CsaV3_1G004670Cucurbita pepo (Zucchini)cpecucB0815
CsaV3_1G004670Bottle gourd (USVL1VR-Ls)cuclsiB030
CsaV3_1G004670Bottle gourd (USVL1VR-Ls)cuclsiB082
CsaV3_1G004670Melon (DHL92) v3.5.1cucmeB036
CsaV3_1G004670Melon (DHL92) v3.6.1cucmedB051
CsaV3_1G004670Watermelon (Charleston Gray)cucwcgB059
CsaV3_1G004670Watermelon (Charleston Gray)cucwcgB089
CsaV3_1G004670Watermelon (97103) v1cucwmB035
CsaV3_1G004670Watermelon (97103) v1cucwmB106
CsaV3_1G004670Watermelon (97103) v2cucwmbB051
CsaV3_1G004670Wax gourdcucwgoB068