CsaV3_1G004210 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGAAAGAGAAGACTCTCCTTCTCCTTCTCCTTCTCCTTCTCATCTTCATCATCTTCATCATCATCTTCATCATCTCCCTCCTCCTTCTCCTCGTGAATCTCTCTGTTTCTTCTTCAAAATCCTTTTCCATTCCCTTCAAATCTTCTCCAGAAACAAACGCCATTTCCTCTCCATCTTCCTCCTCCTCTCCCTACCTCTCTCTCTCCTCCTCTTCACCCTCTCTCTCTCCTCTCACCCTCTCAAATCCCATATCCTCCACCTCGAATCCGTCCTCCGCCATTCCCCCACCCGTTTCGAATTCCGCCATGTCTTCTCCGAGTCCCGTAACGACGCTTTCTCCCTCCTCCGTCTTCGTGCCGCCTTCTTCCTCCCCATCTACGCCTTTTCCCTCTTCCTCGCTGTCTCCACCGTCTCCTCAACTCTTCTCTCCTTCCATTCCAAACGCCCTTCTCTCAAATCCTCTCTCTCCGGCTTCAAAACCTCCTGGACTCGTCCTCTTGTTACCACCATTTGCATCTACGCCATTCTCGTAGCCTACTCTATTGTCCCTAACACCCTCGCTTCCATTTCCCCATCTCCAGCTTTCAGGTTTGTGGTTTTGGTGTTTGGCCTTGTCTTCGAGGTGTATTTGATTTCGATTACGAGTTTAGGACTCGTTGTTTCGATTGCCGAAGAGAGATTTGGTTTTGACGCAATTCGTTATGCAGCGGGGTTGATGGCGGATCGGAGATTGAGTGGTTCGATTCTTACGGCGATGTTTCTTGTTGGGTCGAGTTTGATCTCGTCGGAGATGGAGGGGCTTATGGATGGGGTTGATCATTGGATGAGGTCAACGGCAGCGGTGACGACGAATGTGGCGGTGAGCGTTGGGGACAAGATCGGGTTAATTTCTTTGTACGGTATGGTAATTATTTTCGGATACGTGGTAACAACGGTTTTTTACTGTGAGTGTAGAAAGAGGGATTTTGTTAGGGTGGAAAATGAAGAGGATCATGATCATATTGTCATGGTTTAA ATGTCTGAAAGAGAAGACTCTCCTTCTCCTTCTCCTTCTCCTTCTCATCTTCATCATCTTCATCATCATCTTCATCATCTCCCTCCTCCTTCTCCTCGTGAATCTCTCTGTTTCTTCTTCAAAATCCTTTTCCATTCCCTTCAAATCTTCTCCAGAAACAAACGCCATTTCCTCTCCATCTTCCTCCTCCTCTCCCTACCTCTCTCTCTCCTCCTCTTCACCCTCTCTCTCTCCTCTCACCCTCTCAAATCCCATATCCTCCACCTCGAATCCGTCCTCCGCCATTCCCCCACCCGTTTCGAATTCCGCCATGTCTTCTCCGAGTCCCGTAACGACGCTTTCTCCCTCCTCCGTCTTCGTGCCGCCTTCTTCCTCCCCATCTACGCCTTTTCCCTCTTCCTCGCTGTCTCCACCGTCTCCTCAACTCTTCTCTCCTTCCATTCCAAACGCCCTTCTCTCAAATCCTCTCTCTCCGGCTTCAAAACCTCCTGGACTCGTCCTCTTGTTACCACCATTTGCATCTACGCCATTCTCGTAGCCTACTCTATTGTCCCTAACACCCTCGCTTCCATTTCCCCATCTCCAGCTTTCAGGTTTGTGGTTTTGGTGTTTGGCCTTGTCTTCGAGGTGTATTTGATTTCGATTACGAGTTTAGGACTCGTTGTTTCGATTGCCGAAGAGAGATTTGGTTTTGACGCAATTCGTTATGCAGCGGGGTTGATGGCGGATCGGAGATTGAGTGGTTCGATTCTTACGGCGATGTTTCTTGTTGGGTCGAGTTTGATCTCGTCGGAGATGGAGGGGCTTATGGATGGGGTTGATCATTGGATGAGGTCAACGGCAGCGGTGACGACGAATGTGGCGGTGAGCGTTGGGGACAAGATCGGGTTAATTTCTTTGTACGGTATGGTAATTATTTTCGGATACGTGGTAACAACGGTTTTTTACTGTGAGTGTAGAAAGAGGGATTTTGTTAGGGTGGAAAATGAAGAGGATCATGATCATATTGTCATGGTTTAA ATGTCTGAAAGAGAAGACTCTCCTTCTCCTTCTCCTTCTCCTTCTCATCTTCATCATCTTCATCATCATCTTCATCATCTCCCTCCTCCTTCTCCTCGTGAATCTCTCTGTTTCTTCTTCAAAATCCTTTTCCATTCCCTTCAAATCTTCTCCAGAAACAAACGCCATTTCCTCTCCATCTTCCTCCTCCTCTCCCTACCTCTCTCTCTCCTCCTCTTCACCCTCTCTCTCTCCTCTCACCCTCTCAAATCCCATATCCTCCACCTCGAATCCGTCCTCCGCCATTCCCCCACCCGTTTCGAATTCCGCCATGTCTTCTCCGAGTCCCGTAACGACGCTTTCTCCCTCCTCCGTCTTCGTGCCGCCTTCTTCCTCCCCATCTACGCCTTTTCCCTCTTCCTCGCTGTCTCCACCGTCTCCTCAACTCTTCTCTCCTTCCATTCCAAACGCCCTTCTCTCAAATCCTCTCTCTCCGGCTTCAAAACCTCCTGGACTCGTCCTCTTGTTACCACCATTTGCATCTACGCCATTCTCGTAGCCTACTCTATTGTCCCTAACACCCTCGCTTCCATTTCCCCATCTCCAGCTTTCAGGTTTGTGGTTTTGGTGTTTGGCCTTGTCTTCGAGGTGTATTTGATTTCGATTACGAGTTTAGGACTCGTTGTTTCGATTGCCGAAGAGAGATTTGGTTTTGACGCAATTCGTTATGCAGCGGGGTTGATGGCGGATCGGAGATTGAGTGGTTCGATTCTTACGGCGATGTTTCTTGTTGGGTCGAGTTTGATCTCGTCGGAGATGGAGGGGCTTATGGATGGGGTTGATCATTGGATGAGGTCAACGGCAGCGGTGACGACGAATGTGGCGGTGAGCGTTGGGGACAAGATCGGGTTAATTTCTTTGTACGGTATGGTAATTATTTTCGGATACGTGGTAACAACGGTTTTTTACTGTGAGTGTAGAAAGAGGGATTTTGTTAGGGTGGAAAATGAAGAGGATCATGATCATATTGTCATGGTTTAA MSEREDSPSPSPSPSHLHHLHHHLHHLPPPSPRESLCFFFKILFHSLQIFSRNKRHFLSIFLLLSLPLSLLLFTLSLSSHPLKSHILHLESVLRHSPTRFEFRHVFSESRNDAFSLLRLRAAFFLPIYAFSLFLAVSTVSSTLLSFHSKRPSLKSSLSGFKTSWTRPLVTTICIYAILVAYSIVPNTLASISPSPAFRFVVLVFGLVFEVYLISITSLGLVVSIAEERFGFDAIRYAAGLMADRRLSGSILTAMFLVGSSLISSEMEGLMDGVDHWMRSTAAVTTNVAVSVGDKIGLISLYGMVIIFGYVVTTVFYCECRKRDFVRVENEEDHDHIVMV
BLAST of CsaV3_1G004210 vs. NCBI nr
Match: XP_022997441.1 (uncharacterized protein LOC111492360 [Cucurbita maxima] >XP_022997442.1 uncharacterized protein LOC111492360 [Cucurbita maxima]) HSP 1 Score: 471.1 bits (1211), Expect = 3.2e-129 Identity = 258/310 (83.23%), Postives = 277/310 (89.35%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. NCBI nr
Match: XP_023546373.1 (uncharacterized protein LOC111805502 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 354.4 bits (908), Expect = 4.4e-94 Identity = 190/232 (81.90%), Postives = 207/232 (89.22%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. NCBI nr
Match: XP_023546390.1 (uncharacterized protein LOC111805514 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 311.6 bits (797), Expect = 3.3e-81 Identity = 165/203 (81.28%), Postives = 181/203 (89.16%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. NCBI nr
Match: XP_011649097.1 (PREDICTED: uncharacterized protein LOC105434581 [Cucumis sativus]) HSP 1 Score: 305.1 bits (780), Expect = 3.1e-79 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. NCBI nr
Match: XP_020413271.1 (uncharacterized protein LOC18790496 [Prunus persica] >ONI27607.1 hypothetical protein PRUPE_1G096000 [Prunus persica]) HSP 1 Score: 284.6 bits (727), Expect = 4.3e-73 Identity = 157/285 (55.09%), Postives = 208/285 (72.98%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. TAIR10
Match: AT4G16850.1 (unknown protein) HSP 1 Score: 180.3 bits (456), Expect = 2.1e-45 Identity = 112/281 (39.86%), Postives = 164/281 (58.36%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. TrEMBL
Match: tr|A0A251QV24|A0A251QV24_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G096000 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73 Identity = 157/285 (55.09%), Postives = 208/285 (72.98%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. TrEMBL
Match: tr|A0A2P5BBB7|A0A2P5BBB7_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_327080 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 3.5e-71 Identity = 155/282 (54.96%), Postives = 212/282 (75.18%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. TrEMBL
Match: tr|M5Y204|M5Y204_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa024378mg PE=4 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 2.9e-70 Identity = 150/273 (54.95%), Postives = 200/273 (73.26%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. TrEMBL
Match: tr|A0A2P6Q3G0|A0A2P6Q3G0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0006011 PE=4 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 6.5e-70 Identity = 148/298 (49.66%), Postives = 218/298 (73.15%), Query Frame = 0
BLAST of CsaV3_1G004210 vs. TrEMBL
Match: tr|A0A0A0LV14|A0A0A0LV14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024930 PE=4 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 6.5e-70 Identity = 148/163 (90.80%), Postives = 150/163 (92.02%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |