CsaV3_1G003100 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G003100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 1936184 .. 1936840 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTCTGGAAAAGAAGAATTCCTTTATGGAAGAAGAAAATAATTGAAGAGGAAGAAGAGAAGGAGGAGGAGGAGGAGGAGGAGGATGAGAATGAGGAAGAGGAGGAGGAGGCAGAGAATGAGAATGAGAATGAGGAGGAGGAGGAGGCAGAGAATGAGAATGAGGAGGAGGAGGCAGAGAATGAGAATGAGAAAGAGGAGGTAGAGAATGAGAATGAGAAAGAGGAGGTAGAGAATGAGAATGAGAAGGAGGAAGCAGAGAATGAGGAGGAGGCAGAGAGTGAGGAGGAGGAGAAAGAGCAAGTGCAAGTCCAGCAAGAAGAAGAGAAAGTGCAAGTCCAGGAAGAAGAAAAGCAGGAGGAGGAAGAAGTCCAACAAGCACAACAGCCACGACAACAGCCACGACAACAGCCACGACAACAGCCACGACAACAGCCACGACAACAGCCACAACAACAGCCACGACAACAGCCACAACAACAGCCACGACAACAGCCACAACAAGCCCAAGGGCAAGAGAGATCTGTTTGCAACTGTGAAAATAGTTCATGCAAGCACCACCGTTGTGGCTGTAAAACCAATCAACTGCCCTGTATCGCTGGATGCCATTGTACTGGCAATCGAAATTGCAAAAATCCCTTTACACATATATAA

mRNA sequence

GGAGGAGGAGAAAGAGCAAGTGCAAGTCCAGCAAGAAGAAGAGAAAGTGCAAGTCCAGGAAGAAGAAAAGCAGGAGGAGGAAGAAGTCCAACAAGCACAACAGCCACGACAACAGCCACGACAACACCACGACAACAGCCACAACAAGCCCAAGGGCAAGAGAGATCTGTTTGCAACTGTGAAAATAGTTCATGCAAGCACCACCGTTGTGGCTGTAAAACCAATCAACTGCCCTGTATCGCTGGATGCCATTGTACTGGCAATCGAAATTGCAAAAATCCCTTTACACATATATAA

Coding sequence (CDS)

GGAGGAGGAGAAAGAGCAAGTGCAAGTCCAGCAAGAAGAAGAGAAAGTGCAAGTCCAGGAAGAAGAAAAGCAGGAGGAGGAAGAAGTCCAACAAGCACAACAGCCACGACAACAGCCACGACAACACCACGACAACAGCCACAACAAGCCCAAGGGCAAGAGAGATCTGTTTGCAACTGTGAAAATAGTTCATGCAAGCACCACCGTTGTGGCTGTAAAACCAATCAACTGCCCTGTATCGCTGGATGCCATTGTACTGGCAATCGAAATTGCAAAAATCCCTTTACACATATATAA

Protein sequence

GGGERASASPARRRESASPGRRKAGGGRSPTSTTATTTATTTPRQQPQQAQGQERSVCNCENSSCKHHRCGCKTNQLPCIAGCHCTGNRNCKNPFTHI
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033467Tesmin/TSO1-like_CXC
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G003100.1CsaV3_1G003100.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033467Tesmin/TSO1-like CXC domainSMARTSM01114CXC_2coord: 53..97
e-value: 2.0E-4
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..54

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G003100CSPI01G03030Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G003100Silver-seed gourdcarcucB0419
CsaV3_1G003100Silver-seed gourdcarcucB0494
CsaV3_1G003100Silver-seed gourdcarcucB0497
CsaV3_1G003100Silver-seed gourdcarcucB0549
CsaV3_1G003100Silver-seed gourdcarcucB0627
CsaV3_1G003100Silver-seed gourdcarcucB0629
CsaV3_1G003100Cucumber (Gy14) v2cgybcucB002
CsaV3_1G003100Cucumber (Gy14) v2cgybcucB003
CsaV3_1G003100Cucumber (Gy14) v2cgybcucB013
CsaV3_1G003100Cucumber (Gy14) v1cgycucB144
CsaV3_1G003100Cucumber (Gy14) v1cgycucB146
CsaV3_1G003100Cucumber (Gy14) v1cgycucB314
CsaV3_1G003100Cucurbita maxima (Rimu)cmacucB0061
CsaV3_1G003100Cucurbita maxima (Rimu)cmacucB0077
CsaV3_1G003100Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G003100Cucurbita maxima (Rimu)cmacucB0115
CsaV3_1G003100Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G003100Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G003100Cucurbita moschata (Rifu)cmocucB0242
CsaV3_1G003100Cucurbita moschata (Rifu)cmocucB0047
CsaV3_1G003100Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G003100Cucurbita moschata (Rifu)cmocucB0103
CsaV3_1G003100Cucurbita moschata (Rifu)cmocucB0230
CsaV3_1G003100Cucurbita moschata (Rifu)cmocucB0463
CsaV3_1G003100Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G003100Cucurbita pepo (Zucchini)cpecucB0431
CsaV3_1G003100Cucurbita pepo (Zucchini)cpecucB0445
CsaV3_1G003100Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G003100Cucurbita pepo (Zucchini)cpecucB0798
CsaV3_1G003100Wild cucumber (PI 183967)cpicucB002
CsaV3_1G003100Wild cucumber (PI 183967)cpicucB016
CsaV3_1G003100Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G003100Bottle gourd (USVL1VR-Ls)cuclsiB042
CsaV3_1G003100Bottle gourd (USVL1VR-Ls)cuclsiB071
CsaV3_1G003100Melon (DHL92) v3.5.1cucmeB020
CsaV3_1G003100Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G003100Melon (DHL92) v3.5.1cucmeB046
CsaV3_1G003100Melon (DHL92) v3.6.1cucmedB018
CsaV3_1G003100Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G003100Melon (DHL92) v3.6.1cucmedB043
CsaV3_1G003100Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G003100Watermelon (Charleston Gray)cucwcgB062
CsaV3_1G003100Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G003100Watermelon (Charleston Gray)cucwcgB077
CsaV3_1G003100Watermelon (97103) v1cucwmB069
CsaV3_1G003100Watermelon (97103) v1cucwmB071
CsaV3_1G003100Watermelon (97103) v1cucwmB094
CsaV3_1G003100Watermelon (97103) v2cucwmbB053
CsaV3_1G003100Watermelon (97103) v2cucwmbB055
CsaV3_1G003100Watermelon (97103) v2cucwmbB066
CsaV3_1G003100Wax gourdcucwgoB046
CsaV3_1G003100Wax gourdcucwgoB088
CsaV3_1G003100Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G003100Cucumber (Chinese Long) v3cuccucB004