CsaV3_1G001880 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G001880
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	CCR4-NOT transcription complex subunit 4
Location	chr1 : 1213691 .. 1219583 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGATGTTCGAACAACAGTCATACTCCCTAAGACATTAAGTAATAAAATATATTTACACAAAGCGAATGAAGGAAGATACAATTGTTAGAGAACATGTCTTAGACATGATGATGCAATTCAACATCGTTGAAGTAAAAGGTGAACGCATTAATCAGACTAATCAGGTTAGATTTATCTTACAAACTCTTCCAAAGAGTTTCAGACAAATACGTTACTGGATAAGATAAAGCTCAACTTGATCATTCTTCTGAATGAGCTTCAATGATTTCAATCTCTTACTTTAAGCAATAAAAAAAAAAAGTTAGTTTTTAAGTGAATCGTCCTCTAAAAACAGAGTTGGACCCTCAAAACCTAGATCGGAAAGGAGGAAGAAAATGGATCACATTAACATACCAAACAAACCTAACCTCCCTCCCCCTCTCAATTTCCCTTAAAGGGCCGAAGTTGTTGGGGGTTTTTTCGGCCCAAGAAATGGCCCAAATCAAATGGAATGGAAAACGTCATCGTTTAAATCGTCTCTTTGGGGAAGCACACGAAGGCAGGATGTTTCGCCCTTCAATATAAAGCCAATATGAAGGGGAGGGGATGAGTGGGTAAGAACGAAAATTTAGGAAAAGAAGAGGGATATTATGGTAAATTAGTTGGTATTTAAATGAAATCTCGGCCCTCTGTTTTTTTCCTAGTCTGTGGAAAAGAGCGAGCGAAGCAGAGGAGTTTCCGTTATCCATTCTCTTTCTCTCTCCCTTTCTCTCCCCCGAACCATTTTTTCTCTCTCCCGGAAAAAAATATCCACACAAATTAGGGTTTCTTCTCATCGTTCTTCTTCCTTCAATTCGATTTCAACTCTTCAATCATGGTTACTGATTCGATCGCCAATGCTTCAATTTCTTTGGCACCCAACGCTCGGGATTTGCCCCTGCCCAAGAAGAAGAGGGTGAGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTGTTCAAACGTAAATCTTCTCATTTTTTTTCTCTTTTGATTTTAATGATGTAGAGTTTGTTTTTGTTGATATTTTATTGTTTTTGTTTTTGTTTCTTGTAATTTGTTGTGATTGTTTTTGTTTTGGGGGTTTCAGGTTAGGAATTCAAAATTGAAGCAATCCAAGCTTGACGTTCGTCGGGAACAATGGCTTTCTCGAGGTATAACCATTAATTATGTTTGAATTTGTTGTTTGATTGAAGATGTTTATGAAACGGGATTGATGCATGTGGGAATTTGTTTTTAATCGATTTGGGTTCACGAGTGATAGGTGCTGTAAAGAACAAAAAATGGAACGAGGAAGACAATCGGCTGGATTCAGTGGTTATTAAAACGAGGAAAGATGATGACCTTTCCTCTGAAAAAATAAATATGAGGGAAATAGGAGAAGAGAATGACAGATCGGTCCACCACCATAGCGATTATTCGGACTCACCGTCTAATAGCCCCCCTAGTCTTGGCAGTAGTATATTGGGTGGAAATGATTCGGGTCCTCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCGTAGCAGCTCTAGTGGCTGTCGCTCAGGGAGTATAACGGAGGAGGAGGAAGAAGAAGAAGGAGATGATGACTGCTTGGATGATTGGGAGGCTATTGCCGATGCCCTAGCCGCCACTGACAAGCAACATGATCAATGTTCAGAGTCTTCCCCCAGAGGCAATGTTATTTCTCAATTGGATTCTTGTGGAGACAGAAGAAACGAGTTGGGCGTAGGAGATGGTGACTCGAGTGTTGAGCGTGGGAGAATAGTGCAGAGGGCTTCGATGAATTGCCGAGCATGGAGGCCTGATGATGCCTTTCGTCCTCAGAGTTTGCCCACGTTATCAAAACAGCTTAGTTTACCGACTACAGATCGGCGTTTTGGATGTGGAGGGGTCTCTTGGGCCTGTGGTGGTGTTATTCCTGTGCCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAGTTTTTTACCTTGTTTCTGTGGATTTCGACTATGCCTTTTCTGTCATAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGCTGCAGAAAGCCATATGATCGTGATCCTGCCGACAATGAAACAAACGTACTTGCTGGCAGCCCAACGTTACCATTGGCTCGTTCTTGTAGCATGATTTCAAGGTCTTAGGTAGTGTTCAGTTTCTGTGAGTTAATGTACGTCTGGTCTCACTTTTTTTTTTCCTTTTGTTCCTGCGTCTTGGGTATTATGCTAGTCTTGGGCTCTGATTTTCATAGTAATAGAAGTGGCATTTGGGTGTTGAAGTATGGTTATGAGATTGAGAACCTTTAAACTGAACTGTTTCGTACATGAGTGTGGTTCTTATCTTATCGTACATTTGCCAATGTAGAGGACCTATTTCGTACTTAATATGTGAATAGACGAGGTGGTATAGAAATGAATACATGGAATAATGAAACAACGTTTGGTTTTTCCACTTATTTATTTGTATTTGCATATATGCTGAAACTGTTCTACTTATCACGTTCCTCTGTCTGTCTGAGTTCATGTATTTGCCAATAAATTGTATGTTACATAAGTCTTTTTGCTTGTTTATTTTGGGATAAGAAGTTTGAAATCAGCCTAAGTAAATCTCAATTTGTGTTGCTTTTTAGAGTTTAGACATATAGGCTAATTAGGTTTTTATGACTGTGTACCTTGAATGCAACATACATGTAAAATAACATTTTCTCAAGAGTTAACAGTGAGCATGGTTTGATATTGAAGAATCTATAGTTTGATACATCTTAACACATCTTCGTCATTTAAAATGACTCTTTAATGTCCAATGATTGGAAACCCCTTATTTTAACTTTTTGGTTTTGGCCTGTTTTAACTTTGCAGCCTTACCTTTGCCTTGATTCTTCTTATTGGAAGAGATTTCGTGTGTTTGTGTGTGGTGGGGGTGGGTGTTCCTTTTTATGATGCTTCTTATGCTTTAAAGATGGACTCCTGTGTCTCTCATATGTGTCTTTACATATGACTTTTCAAATTGAATAAAACAGTTCTTAAAAAAATGTTTGTCTCCATGAAAGAGACAATAAAGAAACTGTGATCTAAGCTTGAAAGACAGTGATTTAGCCGGCAGTTTTCCTTGGATGGTGAAAATGCAACGTCGATTTTGGTCAGACCATTCGTCTGTACTTCACTGGCAGTGGCAGGGCAGGACATGGACGACGAGTTTCTCATAGTTTATGTAATTGGTTGATCCTTCACAGGAATAACGTTCACCATTTGAGCTTGTACATCATGTATTCATTAGGCCATTGGTGATCTTCCTTCCTTTCAATGAGGTCCTACTCTACTCATTTGCTATTGATATTGACTTACTCGGTGCAAGTTATTTAGAAAATATTGATTGTTGATTGGTGGTCTCTATTGGAAACTATTACAATTTCTGTAAATGAACAGATTGGAGATTGGATTCATGGAGTTTGGATTGATTATCTTAGTGCTTGGATACCCCTTCTGTAGCTCTTTAAAGGTCATTCCAAACATGCTCAAATTTATGTCTGCTGTTTTAAATGGTTATTCTATTCTATATTTGTCGTACTTTTTTCTTAAGGTTTATCTCCATGGACCATGAACGAGGCCTCTGCCCGTCAGCACAGGTGGTTGGCCGTTTCTGTCAGAGTTTACAAGGTTAGTGCTTGTTGATTATCTTGTTGATAGCCTCAACACTATTATAAAATTGGTAGCGAAATTGTTTCAGAACATGTTCATTACATTAGGGACATTTTTTAAATAAGTTCTGATTATTCATACAAACAGAAGGGATGCTGTTGGAATGTCATTGTCTTTTTCAAGTACAATGGCTTATTAATGTTGGACTACATTGTGTTAGTGGCATTGTTGTCATTCACCATCCTCTCGATGTCATCCTTAATACAAGACTGTGATCTATGATGCTCAGGAAGTGTCTTCCACCACTCCATGAAGGTAGATTTCTTTAACAACATATCATCTTCAATCTCATTGATCCATCGCTTCATCTTCCTCTCCAGCTCTATAATTTCTCTTGAACATTCAGCGTACATTTTGGTTTTGGTTTTGATACGGATCTCCTCTACTTTTGCCCAAAGAGTTGATTCTTCACTAGGATCTGACATTTTTTTATTATGCTCAAGCCATCTTTGTGTAAATCTGTAACGTTTCGGCCTTCCTTTTATCAGATAAGGACCAGTGTCATCATTCTTTGAATGTCTATAGTAGTTAGCAATATCTAGAGGCTCAACAAGACGGCGAAACCTGGTTCCGAGTTTTATCCATTCATCGTCGCCCTCAAATTCCTCTGGGAGCTCGTATCTTTTGAGCATTTCTACAGTCTCATCCCATATACCTGCTAGTTCAAGTCTCTTGATATTAGCTTGGAAATCTATTGGATCCTTCTGGAGTTTAAATACATCATAGTATCCGAAACCATCAACCTTACAAACAGCTCTGTAATCTACTTCTAGCCAATTCAAATGATCCTCGATATTCTGTTTCTTTACTTCCATCCTTTCTTTATTTCTCGTTTTCTGCTCTTCATATGCGCCTGCTGCCCGAAGATTCAATAAAGCTCTTGTACTCTGTAATTTCACATTTGATGGTTAGAGTTCATTGTACCAAGTCCCGTTAGGGATACCTTATCCTTTAGGTAAGGCAAAAAATCAGTATTGATACTTTTAGATACTTTTCATAATGTGATTTGGTGCATTGAACATTGGGTGTATTTTATTGTATCTATATTTCATGTGTATTTGTCTTCTTAGGTATAGGAGTCGAAGAATATAATATGAGAGATAAAGATGGAGAGAGCAAGAAGATTAGAGAACTTACTAGGCCAAGTTCATTCAATGCTTCAGTTATTGCCGTGTTCCTGCCTGTTAAGGACAATGGCAGCTTAGCCAATTCATCTAGGCGAATGGCATGCAGTAGCTCCAAGTTTTGCTGCATTTTAGATTCATAACCCCAATGGGCCTTTAAACTCTGTTGAGCAATGTGATCACATTCGCTCTCAGAGCTCAACTGACAAGCATAGAATAGTATTTGTAAAACAGCATCTGGGTTGGTCACCACCACCGCTTTCTCACTCTCAGTGAAGAAAATGTATGTGCCAAAAGGGCTATAAGGACTCAATTTCACAAAGCTTTGCAATGTGTCTAGCAAAAGGTTAGTGTTTCCCATGAGACGACATGCAGCGTTGCTTACCACAGCCGATGCATTCCTCATCACCGTCATAAAGAATTCGGTAGCTACGTTTCCATTCACTGTTGACCCAAGTGATCTCGAGTTCAGGCAGTTGAGGATGGTTTGTAGTTGTGGTTGTAAGGATGACAGAGGAGCAAGATGGATTCGTGGAACGATGTCGTATCTGGTGACAAAGTGCACAAATTGGGTGGACCATTTCTCCCTTTTGAGAGCATGGTAGAAAATGAAGTTACCAACAAGGGGAGATCCAAATGTGATACATGTAGGAGTGAAGTTGGTGTATGGGTTTGAGTCTGGGTTTCTTTGCTGTTCCAACAGCCAGATGGTTGCAAGAATGGCTATCGAACCTCCGGCTGAGTGGCCGGTAAACACCACAGACTTGTTCACTCTCAGAACCTGAGAAAACGAAATCCCTCAATAGTTAAGAGAAGTGATAGGGTTTTGTTGGAAGCCTGGATTTATTGAAATTGCATAGGGAAATAATGCAATTTCTAAATATGGAGTACGATACCTAATCATCTTTGTTGTAATCATAGCATTGCAAAAATGTCAAAGCAAAATTTTATTCAACTTTTTGTGTTCATACCTTCAAATATCTAATTTTTGTCCTATATTTTTCAAGAAAGCCTATTT

mRNA sequence

ATGGTTACTGATTCGATCGCCAATGCTTCAATTTCTTTGGCACCCAACGCTCGGGATTTGCCCCTGCCCAAGAAGAAGAGGGTTAGGAATTCAAAATTGAAGCAATCCAAGCTTGACGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTAAAGAACAAAAAATGGAACGAGGAAGACAATCGGCTGGATTCAGTGGTTATTAAAACGAGGAAAGATGATGACCTTTCCTCTGAAAAAATAAATATGAGGGAAATAGGAGAAGAGAATGACAGATCGGTCCACCACCATAGCGATTATTCGGACTCACCGTCTAATAGCCCCCCTAGTCTTGGCAGTAGTATATTGGGTGGAAATGATTCGGGTCCTCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCGTAGCAGCTCTAGTGGCTGTCGCTCAGGGAGTATAACGGAGGAGGAGGAAGAAGAAGAAGGAGATGATGACTGCTTGGATGATTGGGAGGCTATTGCCGATGCCCTAGCCGCCACTGACAAGCAACATGATCAATGTTCAGAGTCTTCCCCCAGAGGCAATGTTATTTCTCAATTGGATTCTTGTGGAGACAGAAGAAACGAGTTGGGCGTAGGAGATGGTGACTCGAGTGTTGAGCGTGGGAGAATAGTGCAGAGGGCTTCGATGAATTGCCGAGCATGGAGGCCTGATGATGCCTTTCGTCCTCAGAGTTTGCCCACGTTATCAAAACAGCTTAGTTTACCGACTACAGATCGGCGTTTTGGATGTGGAGGGGTCTCTTGGGCCTGTGGTGGTGTTATTCCTGTGCCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAGTTTTTTACCTTGTTTCTGTGGATTTCGACTATGCCTTTTCTGTCATAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGCTGCAGAAAGCCATATGATCGTGATCCTGCCGACAATGAAACAAACGTACTTGCTGGCAGCCCAACGTTACCATTGGCTCGTTCTTGTAGCATGATTTCAAGGTCTTAG

Coding sequence (CDS)

ATGGTTACTGATTCGATCGCCAATGCTTCAATTTCTTTGGCACCCAACGCTCGGGATTTGCCCCTGCCCAAGAAGAAGAGGGTTAGGAATTCAAAATTGAAGCAATCCAAGCTTGACGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTAAAGAACAAAAAATGGAACGAGGAAGACAATCGGCTGGATTCAGTGGTTATTAAAACGAGGAAAGATGATGACCTTTCCTCTGAAAAAATAAATATGAGGGAAATAGGAGAAGAGAATGACAGATCGGTCCACCACCATAGCGATTATTCGGACTCACCGTCTAATAGCCCCCCTAGTCTTGGCAGTAGTATATTGGGTGGAAATGATTCGGGTCCTCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCGTAGCAGCTCTAGTGGCTGTCGCTCAGGGAGTATAACGGAGGAGGAGGAAGAAGAAGAAGGAGATGATGACTGCTTGGATGATTGGGAGGCTATTGCCGATGCCCTAGCCGCCACTGACAAGCAACATGATCAATGTTCAGAGTCTTCCCCCAGAGGCAATGTTATTTCTCAATTGGATTCTTGTGGAGACAGAAGAAACGAGTTGGGCGTAGGAGATGGTGACTCGAGTGTTGAGCGTGGGAGAATAGTGCAGAGGGCTTCGATGAATTGCCGAGCATGGAGGCCTGATGATGCCTTTCGTCCTCAGAGTTTGCCCACGTTATCAAAACAGCTTAGTTTACCGACTACAGATCGGCGTTTTGGATGTGGAGGGGTCTCTTGGGCCTGTGGTGGTGTTATTCCTGTGCCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAGTTTTTTACCTTGTTTCTGTGGATTTCGACTATGCCTTTTCTGTCATAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGCTGCAGAAAGCCATATGATCGTGATCCTGCCGACAATGAAACAAACGTACTTGCTGGCAGCCCAACGTTACCATTGGCTCGTTCTTGTAGCATGATTTCAAGGTCTTAG

Protein sequence

MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS

Homology

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BLAST of CsaV3_1G001880 vs. NCBI nr
Match: XP_004138290.2 (PREDICTED: uncharacterized protein LOC101211244 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 1.2e-163
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0


Query: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60
           MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX 120
           NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX
Sbjct: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQC 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQC
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQC 180

Query: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240
           SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP
Sbjct: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
           TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 350
           CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 349

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BLAST of CsaV3_1G001880 vs. NCBI nr
Match: XP_008453149.1 (PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo])

HSP 1 Score: 572.4 bits (1474), Expect = 1.1e-159
Identity = 339/349 (97.13%), Postives = 344/349 (98.57%), Query Frame = 0


Query: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60
           MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX 120
           NRLDSVVIKTRKDD+LSSEKINMREIGEENDRSVHHHSDYSDSPSNS XXXXXXXXXXXX
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQC 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQ DQC
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240
           SESSPRGNV+SQLDSCGDRRNELGVGDGDS+VERGRIVQRASMNCRAWRPDDAFRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
           TLSKQLSLP TDRRFGCGGV WACGGV+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 350
           CHKRILEEDGRCPGCRKPYDRDPADNETN+L GSPTLPLARSCSMISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISRS 349

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BLAST of CsaV3_1G001880 vs. NCBI nr
Match: KGN63623.1 (hypothetical protein Csa_1G006330 [Cucumis sativus])

HSP 1 Score: 537.0 bits (1382), Expect = 4.9e-149
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 28  VRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIG 87
           VRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIG
Sbjct: 2   VRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIG 61

Query: 88  EENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 147
           EENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 62  EENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 148 XXXXXXXXXXXXLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGD 207
           XXXXXXXXXXXXLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGD
Sbjct: 122 XXXXXXXXXXXXLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGD 181

Query: 208 GDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGV 267
           GDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGV
Sbjct: 182 GDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGV 241

Query: 268 IPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNE 327
           IPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNE
Sbjct: 242 IPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNE 301

Query: 328 TNVLAGSPTLPLARSCSMISRS 350
           TNVLAGSPTLPLARSCSMISRS
Sbjct: 302 TNVLAGSPTLPLARSCSMISRS 323

[Close]

BLAST of CsaV3_1G001880 vs. NCBI nr
Match: XP_022134843.1 (uncharacterized protein LOC111007016 [Momordica charantia])

HSP 1 Score: 517.3 bits (1331), Expect = 4.0e-143
Identity = 289/349 (82.81%), Postives = 305/349 (87.39%), Query Frame = 0


Query: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60
           MVTDSI NASISLAP+ARDLPLPKKKRV+NSKLKQSKLDVRREQWLSRGAVKNKKWNEED
Sbjct: 1   MVTDSITNASISLAPSARDLPLPKKKRVKNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX 120
           NRLDSVVIKT KDD+LSS+KINMREIG +N  SVHH SD+S+SPSNS             
Sbjct: 61  NRLDSVVIKTSKDDNLSSKKINMREIGGDNGGSVHHDSDFSESPSNS----PPSLASSIL 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQC 180
                    XXXXXXXXXXXXXXXXXXXXXXXXXX    LDDWEAIADALAATDKQHDQC
Sbjct: 121 GGNDSGPHFXXXXXXXXXXXXXXXXXXXXXXXXXXDDDGLDDWEAIADALAATDKQHDQC 180

Query: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240
           SESSPRG+ +SQLDSCGD RNELGVGDGDS +E GRI QRA M+CRAWRPDDAFRPQSLP
Sbjct: 181 SESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQRAPMSCRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
           TLSKQLSLP TDRR+GCGG+ WACGGV+ VPTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 350
           CHKRILEEDGRCPGCRKPY+ DPAD+ETNV  GSPTLPLARSCSMISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPLARSCSMISRS 345

[Close]

BLAST of CsaV3_1G001880 vs. NCBI nr
Match: XP_023529902.1 (uncharacterized protein LOC111792615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 514.2 bits (1323), Expect = 3.4e-142
Identity = 280/349 (80.23%), Postives = 292/349 (83.67%), Query Frame = 0


Query: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60
           MVTDSI NAS+SLAPNA DLPLPKKKRVR SKLKQSKLDVRREQWLSRGAVKNKKWN ED
Sbjct: 1   MVTDSITNASVSLAPNAGDLPLPKKKRVRYSKLKQSKLDVRREQWLSRGAVKNKKWN-ED 60

Query: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX 120
           NRLDSVV+KTRKDDDLSS KIN REIGE+N+RSVHHHSD+S+SPSNS             
Sbjct: 61  NRLDSVVVKTRKDDDLSSNKINSREIGEQNNRSVHHHSDFSESPSNS---PPSLGSSILC 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQC 180
                       XXXXXXXXXXXXXXXX           LDDWEAIADALAATDKQHDQC
Sbjct: 121 GNDSVPHFTGSSXXXXXXXXXXXXXXXXLTEEDEGDDDCLDDWEAIADALAATDKQHDQC 180

Query: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240
           SESSP GN++SQLDSCGD RNELGVGDGDSS+E G+IVQRASMNCRAWRPDDAFRPQSLP
Sbjct: 181 SESSPSGNIVSQLDSCGDSRNELGVGDGDSSIELGKIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
           TLSKQLSLP TDR FG GG+SWACGGV+PVPTSCPICFEDLD TDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRHFGYGGISWACGGVMPVPTSCPICFEDLDFTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 350
           CHKRILEEDGRCPGCRKPYDRD  DNETNV  GSP   LARS SMISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDHGDNETNVDGGSPMFLLARSYSMISRS 345

[Close]

BLAST of CsaV3_1G001880 vs. TAIR10
Match: AT3G48070.2 (RING/U-box superfamily protein)

HSP 1 Score: 203.4 bits (516), Expect = 2.3e-52
Identity = 165/356 (46.35%), Postives = 201/356 (56.46%), Query Frame = 0


Query: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60
           M++DSI NAS + AP ARD    KK+  R++KLKQSKL +RREQWLS+ A+ NK   EE 
Sbjct: 1   MISDSITNASATSAPTARDFG-KKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEE- 60

Query: 61  NRLDSVVIKTRKDDDLSSEKINMREIG------EENDRSVHHHSDYSDSPSNSXXXXXXX 120
                       +  + SEK + R++       +E++   H H  + +S SNS       
Sbjct: 61  ---------MESNRRIGSEKPDQRDLPRPVENLDEDNNGTHRHESFIESLSNS------- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATD 180
                              XXXXXXXXXXXXXXXXXXXXXXXX  LDDWEAIADALAA D
Sbjct: 121 ----PNSILSGMNSIPNFSXXXXXXXXXXXXXXXXXXXXXXXXGCLDDWEAIADALAADD 180

Query: 181 KQHDQCS--ESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDD 240
           ++H++ +  ES      I Q    G     L     DS        +R   + +AWRPDD
Sbjct: 181 EKHEKENPPESCQEHEDIKQSALIGGADVVLRDAKADSQ-------RRKQKSNQAWRPDD 240

Query: 241 AFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCF 300
             RPQ LP L KQ S P  +  F           V  VP+SCPIC+EDLDLTDS+FLPC 
Sbjct: 241 KLRPQGLPNLEKQRSFPVMNLHF---------SSVTVVPSSCPICYEDLDLTDSNFLPCP 300

Query: 301 CGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISR 349
           CGFRLCLFCHK I + DGRCPGCRKPY+R+    E +V  G  T+ LARS SM  R
Sbjct: 301 CGFRLCLFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCR 318

[Close]

BLAST of CsaV3_1G001880 vs. TAIR10
Match: AT5G62910.1 (RING/U-box superfamily protein)

HSP 1 Score: 175.3 bits (443), Expect = 6.8e-44
Identity = 179/358 (50.00%), Postives = 215/358 (60.06%), Query Frame = 0


Query: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60
           M+TDSI NAS + AP  RD    KK+  +++K+KQ+KL +RREQWLS+ AV NK+  EE 
Sbjct: 1   MITDSITNASATSAP--RDSG-KKKRNNKSAKMKQNKLGLRREQWLSQVAVSNKEVKEER 60

Query: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX 120
           +                +                             XXXXXXXXXXXXX
Sbjct: 61  S---------------VNRSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDK----- 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+DDWEA+ADALAA ++     
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDWEAVADALAAEEEIEKKS 180

Query: 181 -----QHDQCSESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRP 240
                  +Q S      NV     S  D  + +GV   D   E  R+  R   + RAWR 
Sbjct: 181 RPLESVKEQVSVGQSASNVCD--SSISDASDVVGV--EDPKQECLRVSSRKQTSNRAWRL 240

Query: 241 DDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLP 300
           DD  RPQ LP L+KQLS P  D+RF            + +P+SCPIC+EDLDLTDS+FLP
Sbjct: 241 DDDLRPQGLPNLAKQLSFPELDKRFSS----------VAIPSSCPICYEDLDLTDSNFLP 300

Query: 301 CFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISR 349
           C CGFRLCLFCHK I + DGRCPGCRKPY+R+    ET++  G  T+ LARS SM  +
Sbjct: 301 CPCGFRLCLFCHKTICDGDGRCPGCRKPYERNMVKAETSIQGGGLTIRLARSSSMFCK 326

[Close]

BLAST of CsaV3_1G001880 vs. TAIR10
Match: AT1G74870.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 5.6e-14
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 274 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDR-DPADNETNV-L 333
           CPIC E +D TD  F PC CGFR+CLFCH +I E + RCP CRK Y +      E     
Sbjct: 212 CPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYKKTSKKSGEVGYQQ 271

Query: 334 AGSPTLPLARSCSMISRS 350
            G  T+PL+ S   + R+
Sbjct: 272 RGRGTIPLSPSFRGLDRA 289

[Close]

BLAST of CsaV3_1G001880 vs. TAIR10
Match: AT3G45630.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-11
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 273 SCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRIL------EEDGRCPGCRKPYDRD 323
           +CP+C E++DLTD    PC CG+++C++C   I+      + +GRCP CR PYD++
Sbjct: 8   TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPYDKE 63

[Close]

BLAST of CsaV3_1G001880 vs. TAIR10
Match: AT5G60170.2 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-11
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 273 SCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEE------DGRCPGCRKPYDRD 323
           +CP+C E++DLTD    PC CG+++C++C   I++       +GRCP CR PYD++
Sbjct: 8   TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYDKE 63

[Close]

BLAST of CsaV3_1G001880 vs. Swiss-Prot
Match: sp|O95628|CNOT4_HUMAN (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 271 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYDRDPA 325
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of CsaV3_1G001880 vs. Swiss-Prot
Match: sp|Q8BT14|CNOT4_MOUSE (CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 271 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYDRDPA 325
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of CsaV3_1G001880 vs. Swiss-Prot
Match: sp|P34909|NOT4_YEAST (General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MOT2 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-10
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 274 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRIL---EEDGRCPGCRKPYD 321
           CP+C E +D+TD +F PC CG+++C FC+  I    E +GRCP CR+ YD
Sbjct: 33  CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYD 82

[Close]

BLAST of CsaV3_1G001880 vs. Swiss-Prot
Match: sp|Q09818|YAC4_SCHPO (Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-09
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 274 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEE-DGRCPGCRKPYDRD 323
           CP+C E++D++D +F PC CG+R+C FC   I E+ +GRCP CR+ Y  +
Sbjct: 18  CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTEE 67

[Close]

BLAST of CsaV3_1G001880 vs. Swiss-Prot
Match: sp|A2YU42|CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica OX=39946 GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 5.0e-04
Identity = 21/58 (36.21%), Postives = 28/58 (48.28%), Query Frame = 0


Query: 282 DLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPL 340
           D      LPC C F++C  C    ++  G CPGC+ PY     D   +V+   PTL L
Sbjct: 158 DERGDDILPCECDFKICADCFADAVKNGGACPGCKDPYKATELD---DVVGARPTLSL 212

[Close]

BLAST of CsaV3_1G001880 vs. TrEMBL
Match: tr|A0A1S3BVJ1|A0A1S3BVJ1_CUCME (uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 7.0e-160
Identity = 339/349 (97.13%), Postives = 344/349 (98.57%), Query Frame = 0


Query: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60
           MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXX 120
           NRLDSVVIKTRKDD+LSSEKINMREIGEENDRSVHHHSDYSDSPSNS XXXXXXXXXXXX
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQC 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQ DQC
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240
           SESSPRGNV+SQLDSCGDRRNELGVGDGDS+VERGRIVQRASMNCRAWRPDDAFRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
           TLSKQLSLP TDRRFGCGGV WACGGV+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 350
           CHKRILEEDGRCPGCRKPYDRDPADNETN+L GSPTLPLARSCSMISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISRS 349

[Close]

BLAST of CsaV3_1G001880 vs. TrEMBL
Match: tr|A0A0A0LP94|A0A0A0LP94_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G006330 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 3.3e-149
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 28  VRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIG 87
           VRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIG
Sbjct: 2   VRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIG 61

Query: 88  EENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 147
           EENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 62  EENDRSVHHHSDYSDSPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 148 XXXXXXXXXXXXLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGD 207
           XXXXXXXXXXXXLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGD
Sbjct: 122 XXXXXXXXXXXXLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGD 181

Query: 208 GDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGV 267
           GDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGV
Sbjct: 182 GDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGV 241

Query: 268 IPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNE 327
           IPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNE
Sbjct: 242 IPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNE 301

Query: 328 TNVLAGSPTLPLARSCSMISRS 350
           TNVLAGSPTLPLARSCSMISRS
Sbjct: 302 TNVLAGSPTLPLARSCSMISRS 323

[Close]

BLAST of CsaV3_1G001880 vs. TrEMBL
Match: tr|W9QL69|W9QL69_9ROSA (CCR4-NOT transcription complex subunit 4 OS=Morus notabilis OX=981085 GN=L484_008926 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 208/349 (59.60%), Postives = 242/349 (69.34%), Query Frame = 0


Query: 1   MVTDSIANASI-SLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEE 60
           M++DS+ANASI S A N++D  L KKKR R +KLKQ KLDVRREQWLS+GAVKNK   EE
Sbjct: 1   MISDSVANASIPSAAYNSKD--LGKKKRARTAKLKQCKLDVRREQWLSQGAVKNKCCKEE 60

Query: 61  DNRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXX 120
            N     V    K+++ S   +  R  G END  +HH+    +S S+S            
Sbjct: 61  TNG----VRTGNKENNRSLGNLEARSRGGENDGLIHHNDSDLESLSSS---PTSLNSGVL 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQ 180
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX LDDWEA+ADALAA DKQ +Q
Sbjct: 121 GGNDSGTNFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLDDWEAVADALAANDKQENQ 180

Query: 181 CSESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSL 240
           CSES P    IS+  S     N  GV  G+S  E  R   R++ N RAWRPDDAFRPQSL
Sbjct: 181 CSESPPEREQISETVSACQATN--GVSGGNSKPEFTRTEPRSAGNSRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSLPTTDRR-FGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLC 300
           P LSKQLSLP +DR+ +GCGGV WAC  ++  P+SCPIC+EDLDLTD+SFLPC CGFRLC
Sbjct: 241 PNLSKQLSLPNSDRQHYGCGGVPWACNNIMVPPSSCPICYEDLDLTDTSFLPCLCGFRLC 300

Query: 301 LFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMIS 348
           LFCHKRIL+EDGRCPGCRKPY+R+  + E  V  GS T  LARSCSMI+
Sbjct: 301 LFCHKRILDEDGRCPGCRKPYERNAVEREARVPGGSLTFRLARSCSMIT 338

[Close]

BLAST of CsaV3_1G001880 vs. TrEMBL
Match: tr|A0A2P5EKN2|A0A2P5EKN2_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_181500 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.1e-79
Identity = 217/351 (61.82%), Postives = 248/351 (70.66%), Query Frame = 0


Query: 1   MVTDSIANASISLAP-NARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEE 60
           M +DS+ANASI  AP N++D  L KKKR R +KLKQ KLDVRREQWLS+ AVKNK   +E
Sbjct: 1   MDSDSVANASIPSAPYNSKD--LGKKKRARTAKLKQCKLDVRREQWLSQVAVKNKCCKDE 60

Query: 61  DNRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXX 120
            N      ++T K+ + S   + MR IGEEN   VHH+          XXXXXXXXXXXX
Sbjct: 61  MNG-----VQTGKERNRSLGNLEMRRIGEENGGQVHHN---DSDXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQ 180
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX LDDWEA+ADALAA DK  + 
Sbjct: 121 GSNDSGTNFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLDDWEAVADALAANDKPENP 180

Query: 181 CSESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSL 240
           C+E  P    ISQ+ S     N   +G G+S  E    V R S N RAWRPDDA RPQ L
Sbjct: 181 CAELPPEHEPISQMASSCQGTNGSVLGIGNSKPECATTVSRVSGNSRAWRPDDALRPQCL 240

Query: 241 PTLSKQLSLPTTDRR-FGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLC 300
           P LSKQLSLP +DR+ +GCGGV WAC  +IP P+SCPICFEDLDLTD+SF PC CGFRLC
Sbjct: 241 PNLSKQLSLPNSDRQHYGCGGVPWACNNIIPPPSSCPICFEDLDLTDTSFFPCLCGFRLC 300

Query: 301 LFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 350
           LFCHKRILEEDGRCPGCRKPY+R+P + E +V  G  T  LARSCS+I+RS
Sbjct: 301 LFCHKRILEEDGRCPGCRKPYERNPVEAEASVRGGGLTFRLARSCSVITRS 341

[Close]

BLAST of CsaV3_1G001880 vs. TrEMBL
Match: tr|A0A2P5A5V4|A0A2P5A5V4_PARAD (43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_365760 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.3e-77
Identity = 215/351 (61.25%), Postives = 247/351 (70.37%), Query Frame = 0


Query: 1   MVTDSIANASISLAP-NARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEE 60
           MV+DS+ANASI  AP N++D  L KKKR R +KLKQ KLDVRREQWLS+ AVKNK   +E
Sbjct: 1   MVSDSVANASIPSAPYNSKD--LGKKKRARTAKLKQCKLDVRREQWLSQVAVKNKCCKDE 60

Query: 61  DNRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSXXXXXXXXXXXX 120
            N      ++T K+ + S   + MR IGEEN    HH+          XXXXXXXXXXXX
Sbjct: 61  MNG-----VQTGKERNRSLGNLEMRRIGEENGGQGHHN---DXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDWEAIADALAATDKQHDQ 180
           X          XXXXXXXXXXXXXXXXXXXXXXXXXXXX LDDWEA+ADALAA DK  + 
Sbjct: 121 XSNDSGTNFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLDDWEAVADALAANDKPENP 180

Query: 181 CSESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSL 240
           C++  P    +SQ+ S         +G G+S  E    V R S N RAWRPDDA RPQ L
Sbjct: 181 CAKLPPEHEPVSQMASSCQGTIGSVLGIGNSKPECATTVSRVSGNSRAWRPDDALRPQCL 240

Query: 241 PTLSKQLSLPTTDRR-FGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLC 300
           P LSKQLSLP +DR+ +GCGGV WAC  +IP P+SCPICFEDLDLTD+SFLPC CGFRLC
Sbjct: 241 PNLSKQLSLPNSDRQHYGCGGVPWACNNIIPPPSSCPICFEDLDLTDTSFLPCLCGFRLC 300

Query: 301 LFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 350
           LFCHKRILEEDGRCPGCRKPY+ +P + E +V  G  T  LARSCSMI+RS
Sbjct: 301 LFCHKRILEEDGRCPGCRKPYECNPVEAEASVRGGGLTFRLARSCSMITRS 341

The following BLAST results are available for this feature:

BLAST of CsaV3_1G001880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138290.2	1.2e-163	100.00	PREDICTED: uncharacterized protein LOC101211244 [Cucumis sativus]	[more]
XP_008453149.1	1.1e-159	97.13	PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo]	[more]
KGN63623.1	4.9e-149	100.00	hypothetical protein Csa_1G006330 [Cucumis sativus]	[more]
XP_022134843.1	4.0e-143	82.81	uncharacterized protein LOC111007016 [Momordica charantia]	[more]
XP_023529902.1	3.4e-142	80.23	uncharacterized protein LOC111792615 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G001880 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48070.2	2.3e-52	46.35	RING/U-box superfamily protein	[more]
AT5G62910.1	6.8e-44	50.00	RING/U-box superfamily protein	[more]
AT1G74870.1	5.6e-14	46.15	RING/U-box superfamily protein	[more]
AT3G45630.1	2.0e-11	42.86	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G60170.2	4.5e-11	42.86	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CsaV3_1G001880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O95628\|CNOT4_HUMAN	1.3e-12	52.73	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 S...	[more]
sp\|Q8BT14\|CNOT4_MOUSE	1.3e-12	52.73	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 ...	[more]
sp\|P34909\|NOT4_YEAST	3.6e-10	50.00	General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisia...	[more]
sp\|Q09818\|YAC4_SCHPO	1.1e-09	48.00	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharo...	[more]
sp\|A2YU42\|CSLD2_ORYSI	5.0e-04	36.21	Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica OX=39946 GN=CSL...	[more]

BLAST of CsaV3_1G001880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BVJ1\|A0A1S3BVJ1_CUCME	7.0e-160	97.13	uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=...	[more]
tr\|A0A0A0LP94\|A0A0A0LP94_CUCSA	3.3e-149	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G006330 PE=4 SV=1	[more]
tr\|W9QL69\|W9QL69_9ROSA	1.2e-79	59.60	CCR4-NOT transcription complex subunit 4 OS=Morus notabilis OX=981085 GN=L484_00...	[more]
tr\|A0A2P5EKN2\|A0A2P5EKN2_9ROSA	6.1e-79	61.82	43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_181500 PE=...	[more]
tr\|A0A2P5A5V4\|A0A2P5A5V4_PARAD	4.3e-77	61.25	43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_365760...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G001880.1	CsaV3_1G001880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14570	zf-RING_4	coord: 274..320 e-value: 1.3E-18 score: 66.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..194
None	No IPR available	PANTHER	PTHR42657	FAMILY NOT NAMED	coord: 1..349
None	No IPR available	CDD	cd16618	mRING-HC-C4C4_CNOT4	coord: 274..317 e-value: 1.26297E-17 score: 74.5732
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 272..324
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 270..331 e-value: 5.0E-18 score: 66.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 274..316 score: 9.17

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G001880	CSPI01G01830	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G001880	Cucsa.197300	Cucumber (Gy14) v1	cgycucB314
CsaV3_1G001880	CmaCh10G001560	Cucurbita maxima (Rimu)	cmacucB0058
CsaV3_1G001880	CmaCh11G001830	Cucurbita maxima (Rimu)	cmacucB0112
CsaV3_1G001880	CmoCh11G001250	Cucurbita moschata (Rifu)	cmocucB0091
CsaV3_1G001880	CmoCh10G001680	Cucurbita moschata (Rifu)	cmocucB0044
CsaV3_1G001880	Cp4.1LG18g08170	Cucurbita pepo (Zucchini)	cpecucB0442
CsaV3_1G001880	Cp4.1LG04g15230	Cucurbita pepo (Zucchini)	cpecucB0814
CsaV3_1G001880	Carg10379	Silver-seed gourd	carcucB0395
CsaV3_1G001880	Carg18155	Silver-seed gourd	carcucB0646
CsaV3_1G001880	Cla019155	Watermelon (97103) v1	cucwmB105
CsaV3_1G001880	MELO3C017131	Melon (DHL92) v3.5.1	cucmeB053
CsaV3_1G001880	ClCG06G016630	Watermelon (Charleston Gray)	cucwcgB088
CsaV3_1G001880	Lsi06G015120	Bottle gourd (USVL1VR-Ls)	cuclsiB081
CsaV3_1G001880	MELO3C017131.2	Melon (DHL92) v3.6.1	cucmedB050
CsaV3_1G001880	Cla97C06G126220	Watermelon (97103) v2	cucwmbB076
CsaV3_1G001880	Bhi02G000295	Wax gourd	cucwgoB103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G001880	Cucumber (Chinese Long) v3	cuccucB002
CsaV3_1G001880	Cucumber (Chinese Long) v3	cuccucB025
CsaV3_1G001880	Cucumber (Chinese Long) v3	cuccucB035
CsaV3_1G001880	Silver-seed gourd	carcucB0530
CsaV3_1G001880	Silver-seed gourd	carcucB1047
CsaV3_1G001880	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G001880	Cucumber (Gy14) v2	cgybcucB008
CsaV3_1G001880	Cucumber (Gy14) v1	cgycucB110
CsaV3_1G001880	Cucumber (Gy14) v1	cgycucB435
CsaV3_1G001880	Cucumber (Gy14) v1	cgycucB520
CsaV3_1G001880	Cucurbita maxima (Rimu)	cmacucB0239
CsaV3_1G001880	Cucurbita maxima (Rimu)	cmacucB0272
CsaV3_1G001880	Cucurbita maxima (Rimu)	cmacucB0478
CsaV3_1G001880	Cucurbita maxima (Rimu)	cmacucB0814
CsaV3_1G001880	Cucurbita moschata (Rifu)	cmocucB0094
CsaV3_1G001880	Cucurbita moschata (Rifu)	cmocucB0227
CsaV3_1G001880	Cucurbita moschata (Rifu)	cmocucB0261
CsaV3_1G001880	Cucurbita moschata (Rifu)	cmocucB0468
CsaV3_1G001880	Cucurbita moschata (Rifu)	cmocucB0798
CsaV3_1G001880	Cucurbita pepo (Zucchini)	cpecucB0023
CsaV3_1G001880	Cucurbita pepo (Zucchini)	cpecucB0470
CsaV3_1G001880	Cucurbita pepo (Zucchini)	cpecucB0638
CsaV3_1G001880	Cucurbita pepo (Zucchini)	cpecucB0740
CsaV3_1G001880	Wild cucumber (PI 183967)	cpicucB012
CsaV3_1G001880	Wild cucumber (PI 183967)	cpicucB131
CsaV3_1G001880	Wild cucumber (PI 183967)	cpicucB254
CsaV3_1G001880	Bottle gourd (USVL1VR-Ls)	cuclsiB036
CsaV3_1G001880	Bottle gourd (USVL1VR-Ls)	cuclsiB049
CsaV3_1G001880	Melon (DHL92) v3.5.1	cucmeB005
CsaV3_1G001880	Melon (DHL92) v3.5.1	cucmeB015
CsaV3_1G001880	Melon (DHL92) v3.6.1	cucmedB005
CsaV3_1G001880	Melon (DHL92) v3.6.1	cucmedB013
CsaV3_1G001880	Melon (DHL92) v3.6.1	cucmedB064
CsaV3_1G001880	Watermelon (Charleston Gray)	cucwcgB006
CsaV3_1G001880	Watermelon (Charleston Gray)	cucwcgB017
CsaV3_1G001880	Watermelon (Charleston Gray)	cucwcgB070
CsaV3_1G001880	Watermelon (97103) v1	cucwmB044
CsaV3_1G001880	Watermelon (97103) v1	cucwmB061
CsaV3_1G001880	Watermelon (97103) v2	cucwmbB004
CsaV3_1G001880	Watermelon (97103) v2	cucwmbB059
CsaV3_1G001880	Wax gourd	cucwgoB061