Cp4.1LG18g08170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g08170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCCR4-NOT transcription complex subunit 4
LocationCp4.1LG18 : 7630570 .. 7633926 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTTATTCTGTGGAAAAGAGCGGACGAAGCAGAGGAGTTTCCGTTATCCATTTTTTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCCCTCGAAGATCTTCTCTCTCCCGGGAAATAAAAATATCCACACAAATTAGGGTTTCCTTGCGAATTTGGTTTCTTCAATTCGATTTCAACTCTTCCATCATGGTTACTGATTCGATCGCTAATGCTTCAATTTCTCTGGCCCCTAACGCCCGGGATTTGCCCCTGTCCAAGAAGAGGAGGGTGAGGACTCTCTCTCTCTTTTTGTTCAAACGTAAATCTTCTCATTTTTTCTTTTAATTTTAATGCCGGAGAGTTTTATTGTTTTTTTTTTTCTTTGATGATTACTGAATTTTCCCCCTAATTTGGTCGTAATTGTTTCGGCTGGGGATTTCAGGCTAGGAACTCCAAATTGAAGCAGTCCAAGCTTGACGTTCGTCGCGAGCAATGGCTTTCTCGAGGTATAACCACTAATTATGTTTCAATTTGTTGTTAATTGAATATATTGATGGAACGGACTTCATGCATGCGATAATTTGTATTTAATCGATTTGGGTTCACGAGTGATAGGTGCGATAAAGAACAAAAAATGGAGCGAAGAAGACAATCGGCTTGAGTCAGAGGTCGTCAAAACGGTGGAAGATGATAAACTTTCCTCCAAAAAAATAAATAGGAGGGAAATAGGAGAAGAGGACGACAGATCGGTCCACCATCACAGCGATTGTTCGGAGTCGCCGTCCAATAGCCCCCCTAGTATTGGAAGTAGTATCTTGGGTGGTAATGATTCGGGTCACCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCGCAGCAGTTCTAGTGGTTGTCGCTCGGGGAGTATAACGGAGGAGGAGGAAGATGAAGGAGATGATGACTGCTTGGAAGATTGGGAGGCTTTTGCCGATACCCTAATCGCCACTGACAAGCAGCATGATCAATGCTCCGAGTCTTCCCCTAGGGGCGATGTTGTTTCTCAATTGGGTTCTTGCGAAGACAGCAGAAATGAGTTAGGCGTAGGAGATGGTGATTCGAGCATTGAGCATGGGAGAATTGCGCGGAGGGCTTCAATGAATGGCCGAGCATGGAGGCCTGATGATGCCGATCGTCCCCAGAGTTTGCCCACATTATCAAAACAGCTTAGTTTACCGAATACAGATCGGCGTTTTGGATGTGGAGGCGTCCCTTGGGCTTGTGGTGGTGTTGTGCCTGTACCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAACTTTTTACCTTGTCCCTGTGGATTCCGGCTATGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGTTGTCCTGGTTGCAGGAAGCCATATGATCGTGATCCTGCGGATAACGAGACAAACGAACACAGTGGCAGCCCGACGTTCCCATTGGCTCGTTCTTGTAGCATGATTTCAAGGTCTTAGGTAGTGTTCAGTTTCTGTGAGTTGTTAATGTACGTCTGCTCCACTTTTCTTTTCTTTTATTTTTCTGTCCTGCGTCTCTTGGGTACTATAGTAGTCTTGGGCTCTGATTTTCATAGTAATAGAAGTGGCATTTGGGTGTTGAAGTATGGTAATGAGATTGAGAACCTTTAAACTGAATTTCCTACAAGAGTGTGGTTCTTATCTTGTGGTACATTTGCCAATGTAGAGGACTTAATTCGTACTTGATATGTGAATAGATGAGATGGTATAGAAATAAATACATGGAATAATGATACAACGTTTGTCTGTTTTTCTTCACTTCCTTCTTTATTTGTATTTGCATATATTTCATAGGAATGCTGAAACTGTTCTATTTGTCGTCACCTTCCTCCTCATTCTTGTTGATCTTATGAGATTTAGTGTCATACTTGATTACTTCCTTGGAGTTATATAGCATAAAATGAAATGTGGAAATATTTGCAATACCTTCAGTTATGGTGTAGGAAACTATGATCCAAACTTGAAAGACAGCTATGCAGCTGGAAGTCTACTTGGATGAGTTGATTGTTGATGGGTTGTCTTAAGCTATCGGGGAGGAGAACGAAGCATTCTCGGAAATCTCTTTCTAGCAGATAGGGTTTGCTCAAAGAGACGATATTTGCTAACGATGGGCTTGAACTGTTACGTAAGCTATTCCAATTGCTGCGAACGAGGATTTTATCTGCTAGGCTTTTCTGTTCCAAATGGTTGCTCTGATGTGAATGTTTTGGCTCATTTTTCCTTTCTATAATATAATTTTCATGCTGTGTCTATATAAGGTTTATGTTCAACTTAAAATTGATTTCTAATTATCCCAATATCTTCTAGAGGGCTAAACGGCATTTGTCTCCATGAACAAGGCCTCTGCTCCTCAGCCCAGGTGGTCGGCAGTTTCTGTCGGAGATTACAAGGTTAGTTCTTATCTTCTTGAAAGCTCCGCCGTAAGTATAAAATTGGTGTCGAAATTGTTCCTGAACATATTCATTAAAAAGTTTAGTACAATTTTAGCACATTTTTTAGAGTAAGTTTCTAATTATTCATACAAACAGAAAGGATCCGGTTGGAACATTATTGTTTTATAAGTACAATGCCTTCATTAAGGTCGGACTACATCGAGTTAGTAGCATCCTCGGTATTCGCCATCCTCTCGATATCGTCCCTAATACAAGACTGTGATCTATGATGCTCAGGAAGTGTCTTCCACCACTCCATGAAAGTAGATTTCTTTAACAACATATCATTTTCAATCTCATTGACCCATCTCTTCATCTTCTTCTCCAACTCTAAGATTTCTCTTGAACATTCAGCGTACAGTTTGGTTCTGGTTTGGATACGAAGCTCCTCTACCTCTGCCCAAAGAGTCGATACTTCACTCGGCTCCGTCATCTTTTGATTATGTTCGAGCCATCTTTGTGTAAATCTGTAACGTTTTGGCCTTCCCTTTATCATATAAGGACCAGTATCATCATTCTTGGAGTGTCTATAGTAGTTAGCAATATCTAGAGGCTCATAGAGACAGCGAAACCTGGTTCCGATTTGTATCCATTCGTCCTGGCCCTCAAATTCATCCGGGAGCTCGTATCTTTTGAGCATTTCTACGATCTCGTCCCATATACCTGCTTGCTCAAGCCTCTTGATATTAGCTTGGAAGTCTTTCGGATCCTTCTGGAGTTTAAATGCATCATAATATCCCAAACCGTCAACCTTACATACATCTCTGTAATTTTCTTCTAGCCAATTCAATAGTTTCTCGATATCTTGTTTCTTTAGACTCATCCTTTCTTGATTTTTGATTTTCTGCTCTTCGTACGAGCCAGCTGCT

mRNA sequence

TGCTTATTCTGTGGAAAAGAGCGGACGAAGCAGAGGAGTTTCCGTTATCCATTTTTTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCCCTCGAAGATCTTCTCTCTCCCGGGAAATAAAAATATCCACACAAATTAGGGTTTCCTTGCGAATTTGGTTTCTTCAATTCGATTTCAACTCTTCCATCATGGTTACTGATTCGATCGCTAATGCTTCAATTTCTCTGGCCCCTAACGCCCGGGATTTGCCCCTGTCCAAGAAGAGGAGGGCTAGGAACTCCAAATTGAAGCAGTCCAAGCTTGACGTTCGTCGCGAGCAATGGCTTTCTCGAGGTGCGATAAAGAACAAAAAATGGAGCGAAGAAGACAATCGGCTTGAGTCAGAGGTCGTCAAAACGGTGGAAGATGATAAACTTTCCTCCAAAAAAATAAATAGGAGGGAAATAGGAGAAGAGGACGACAGATCGGTCCACCATCACAGCGATTGTTCGGAGTCGCCGTCCAATAGCCCCCCTAGTATTGGAAGTAGTATCTTGGGTGGTAATGATTCGGGTCACCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCGCAGCAGTTCTAGTGGTTGTCGCTCGGGGAGTATAACGGAGGAGGAGGAAGATGAAGGAGATGATGACTGCTTGGAAGATTGGGAGGCTTTTGCCGATACCCTAATCGCCACTGACAAGCAGCATGATCAATGCTCCGAGTCTTCCCCTAGGGGCGATGTTGTTTCTCAATTGGGTTCTTGCGAAGACAGCAGAAATGAGTTAGGCGTAGGAGATGGTGATTCGAGCATTGAGCATGGGAGAATTGCGCGGAGGGCTTCAATGAATGGCCGAGCATGGAGGCCTGATGATGCCGATCGTCCCCAGAGTTTGCCCACATTATCAAAACAGCTTAGTTTACCGAATACAGATCGGCGTTTTGGATGTGGAGGCGTCCCTTGGGCTTGTGGTGGTGTTGTGCCTGTACCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAACTTTTTACCTTGTCCCTGTGGATTCCGGCTATGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGTTGTCCTGGTTGCAGGAAGCCATATGATCGTGATCCTGCGGATAACGAGACAAACGAACACAGTGGCAGCCCGACGTTCCCATTGGCTCGTTCTTGTAGCATGATTTCAAGGTCTTAGGTAGTGTTCAGTTTCTGTGAGTTGTTAATTTATGGTGTAGGAAACTATGATCCAAACTTGAAAGACAGCTATGCAGCTGGAAGTCTACTTGGATGAGTTGATTGTTGATGGGTTGTCTTAAGCTATCGGGGAGGAGAACGAAGCATTCTCGGAAATCTCTTTCTAGCAGATAGGGTTTGCTCAAAGAGACGATATTTGCTAACGATGGGCTTGAACTGTTACAGGGCTAAACGGCATTTGTCTCCATGAACAAGGCCTCTGCTCCTCAGCCCAGGTGGTCGGCAGTTTCTGTCGGAGATTACAAGGTTAGTTCTTATCTTCTTGAAAGCTCCGCCGTAAGTATAAAATTGGTGTCGAAATTGTTCCTGAACATATTCATTAAAAAGTTTAGTACAATTTTAGCACATTTTTTAGAGTAAGTTTCTAATTATTCATACAAACAGAAAGGATCCGGTTGGAACATTATTGTTTTATAAGTACAATGCCTTCATTAAGGTCGGACTACATCGAGTTAGTAGCATCCTCGGTATTCGCCATCCTCTCGATATCGTCCCTAATACAAGACTGTGATCTATGATGCTCAGGAAGTGTCTTCCACCACTCCATGAAAGTAGATTTCTTTAACAACATATCATTTTCAATCTCATTGACCCATCTCTTCATCTTCTTCTCCAACTCTAAGATTTCTCTTGAACATTCAGCGTACAGTTTGGTTCTGGTTTGGATACGAAGCTCCTCTACCTCTGCCCAAAGAGTCGATACTTCACTCGGCTCCGTCATCTTTTGATTATGTTCGAGCCATCTTTGTGTAAATCTGTAACGTTTTGGCCTTCCCTTTATCATATAAGGACCAGTATCATCATTCTTGGAGTGTCTATAGTAGTTAGCAATATCTAGAGGCTCATAGAGACAGCGAAACCTGGTTCCGATTTGTATCCATTCGTCCTGGCCCTCAAATTCATCCGGGAGCTCGTATCTTTTGAGCATTTCTACGATCTCGTCCCATATACCTGCTTGCTCAAGCCTCTTGATATTAGCTTGGAAGTCTTTCGGATCCTTCTGGAGTTTAAATGCATCATAATATCCCAAACCGTCAACCTTACATACATCTCTGTAATTTTCTTCTAGCCAATTCAATAGTTTCTCGATATCTTGTTTCTTTAGACTCATCCTTTCTTGATTTTTGATTTTCTGCTCTTCGTACGAGCCAGCTGCT

Coding sequence (CDS)

ATGGTTACTGATTCGATCGCTAATGCTTCAATTTCTCTGGCCCCTAACGCCCGGGATTTGCCCCTGTCCAAGAAGAGGAGGGCTAGGAACTCCAAATTGAAGCAGTCCAAGCTTGACGTTCGTCGCGAGCAATGGCTTTCTCGAGGTGCGATAAAGAACAAAAAATGGAGCGAAGAAGACAATCGGCTTGAGTCAGAGGTCGTCAAAACGGTGGAAGATGATAAACTTTCCTCCAAAAAAATAAATAGGAGGGAAATAGGAGAAGAGGACGACAGATCGGTCCACCATCACAGCGATTGTTCGGAGTCGCCGTCCAATAGCCCCCCTAGTATTGGAAGTAGTATCTTGGGTGGTAATGATTCGGGTCACCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCGCAGCAGTTCTAGTGGTTGTCGCTCGGGGAGTATAACGGAGGAGGAGGAAGATGAAGGAGATGATGACTGCTTGGAAGATTGGGAGGCTTTTGCCGATACCCTAATCGCCACTGACAAGCAGCATGATCAATGCTCCGAGTCTTCCCCTAGGGGCGATGTTGTTTCTCAATTGGGTTCTTGCGAAGACAGCAGAAATGAGTTAGGCGTAGGAGATGGTGATTCGAGCATTGAGCATGGGAGAATTGCGCGGAGGGCTTCAATGAATGGCCGAGCATGGAGGCCTGATGATGCCGATCGTCCCCAGAGTTTGCCCACATTATCAAAACAGCTTAGTTTACCGAATACAGATCGGCGTTTTGGATGTGGAGGCGTCCCTTGGGCTTGTGGTGGTGTTGTGCCTGTACCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAACTTTTTACCTTGTCCCTGTGGATTCCGGCTATGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGTTGTCCTGGTTGCAGGAAGCCATATGATCGTGATCCTGCGGATAACGAGACAAACGAACACAGTGGCAGCCCGACGTTCCCATTGGCTCGTTCTTGTAGCATGATTTCAAGGTCTTAG

Protein sequence

MVTDSIANASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEEDNRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGGNDSGHHFTGSSSSSSCRSSSSGCRSGSITEEEEDEGDDDCLEDWEAFADTLIATDKQHDQCSESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISRS
Homology
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BLAST of Cp4.1LG18g08170 vs. Swiss-Prot
Match: CNOT4_MOUSE (CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-13
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1 

Query: 270 PTSCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRI-LEEDGRCPGCRKPYDRDPA 324
           P  CP+C E L++ D NF PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]
BLAST of Cp4.1LG18g08170 vs. Swiss-Prot
Match: CNOT4_HUMAN (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-13
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1 

Query: 270 PTSCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRI-LEEDGRCPGCRKPYDRDPA 324
           P  CP+C E L++ D NF PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]
BLAST of Cp4.1LG18g08170 vs. Swiss-Prot
Match: NOT4_YEAST (General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-12
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 273 CPICFEDLDLTDSNFLPCPCGFRLCLFCHKRIL---EEDGRCPGCRKPYD 320
           CP+C E +D+TD NF PCPCG+++C FC+  I    E +GRCP CR+ YD
Sbjct: 33  CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYD 82

[Close]
BLAST of Cp4.1LG18g08170 vs. Swiss-Prot
Match: YAC4_SCHPO (Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16C9.04c PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-10
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 273 CPICFEDLDLTDSNFLPCPCGFRLCLFCHKRILEE-DGRCPGCRKPYDRD 322
           CP+C E++D++D NF PC CG+R+C FC   I E+ +GRCP CR+ Y  +
Sbjct: 18  CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTEE 67

[Close]
BLAST of Cp4.1LG18g08170 vs. TrEMBL
Match: A0A0A0LP94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G006330 PE=4 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 1.9e-156
Identity = 280/321 (87.23%), Postives = 298/321 (92.83%), Query Frame = 1 

Query: 29  RNSKLKQSKLDVRREQWLSRGAIKNKKWSEEDNRLESEVVKTVEDDKLSSKKINRREIGE 88
           RNSKLKQSKLDVRREQWLSRGA+KNKKW+EEDNRL+S V+KT +DD LSS+KIN REIGE
Sbjct: 3   RNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIGE 62

Query: 89  EDDRSVHHHSDCSESPSNSPPSIGSSILGGNDSGHHFTGSSSSSSCRSSSSGCRSGSITE 148
           E+DRSVHHHSD S+SPSNSPPS+GSSILGGNDSG HFTGSSSSSSCRSSSSGCRSGSITE
Sbjct: 63  ENDRSVHHHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITE 122

Query: 149 E-EEDEGDDDCLEDWEAFADTLIATDKQHDQCSESSPRGDVVSQLGSCEDSRNELGVGDG 208
           E EE+EGDDDCL+DWEA AD L ATDKQHDQCSESSPRG+V+SQL SC D RNELGVGDG
Sbjct: 123 EEEEEEGDDDCLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGDG 182

Query: 209 DSSIEHGRIARRASMNGRAWRPDDADRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVV 268
           DSS+E GRI +RASMN RAWRPDDA RPQSLPTLSKQLSLP TDRRFGCGGV WACGGV+
Sbjct: 183 DSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGVI 242

Query: 269 PVPTSCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNET 328
           PVPTSCPICFEDLDLTDS+FLPC CGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNET
Sbjct: 243 PVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNET 302

Query: 329 NEHSGSPTFPLARSCSMISRS 349
           N  +GSPT PLARSCSMISRS
Sbjct: 303 NVLAGSPTLPLARSCSMISRS 323

[Close]
BLAST of Cp4.1LG18g08170 vs. TrEMBL
Match: W9QL69_9ROSA (CCR4-NOT transcription complex subunit 4 OS=Morus notabilis GN=L484_008926 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 2.2e-99
Identity = 207/348 (59.48%), Postives = 254/348 (72.99%), Query Frame = 1 

Query: 1   MVTDSIANASI-SLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEE 60
           M++DS+ANASI S A N++DL   KK+RAR +KLKQ KLDVRREQWLS+GA+KNK   EE
Sbjct: 1   MISDSVANASIPSAAYNSKDL--GKKKRARTAKLKQCKLDVRREQWLSQGAVKNKCCKEE 60

Query: 61  DNRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGGN 120
            N + +      +++  S   +  R  G E+D  +HH+    ES S+SP S+ S +LGGN
Sbjct: 61  TNGVRT----GNKENNRSLGNLEARSRGGENDGLIHHNDSDLESLSSSPTSLNSGVLGGN 120

Query: 121 DSGHHFTGSSSSSSCRSSSSGCRSGSITEEEEDEGDDDCLEDWEAFADTLIATDKQHDQC 180
           DSG +FTGSSSSSS  +SS GC SGSITEEEE+  DD CL+DWEA AD L A DKQ +QC
Sbjct: 121 DSGTNFTGSSSSSSSSTSSGGCCSGSITEEEEE--DDGCLDDWEAVADALAANDKQENQC 180

Query: 181 SESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQSLP 240
           SES P  + +S+  S   + N  GV  G+S  E  R   R++ N RAWRPDDA RPQSLP
Sbjct: 181 SESPPEREQISETVSACQATN--GVSGGNSKPEFTRTEPRSAGNSRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPNTDRR-FGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRLCL 300
            LSKQLSLPN+DR+ +GCGGVPWAC  ++  P+SCPIC+EDLDLTD++FLPC CGFRLCL
Sbjct: 241 NLSKQLSLPNSDRQHYGCGGVPWACNNIMVPPSSCPICYEDLDLTDTSFLPCLCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMIS 347
           FCHKRIL+EDGRCPGCRKPY+R+  + E     GS TF LARSCSMI+
Sbjct: 301 FCHKRILDEDGRCPGCRKPYERNAVEREARVPGGSLTFRLARSCSMIT 338

[Close]
BLAST of Cp4.1LG18g08170 vs. TrEMBL
Match: V7CB10_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G196200g PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.7e-83
Identity = 198/360 (55.00%), Postives = 238/360 (66.11%), Query Frame = 1 

Query: 1   MVTDSIANASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEED 60
           MV+DSI+   I  A N ++ P  KKR  R++KLKQ K+D RREQWLS+GA+K+K   +  
Sbjct: 1   MVSDSISAVPIPSAANTKN-PGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGCKDG- 60

Query: 61  NRLESEVVKT----VEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSIL 120
             +E ++V+     V   KLS + +N R  GEEDD  VHH SD SESP+N P    + +L
Sbjct: 61  --VEDDIVRAPPPAVNHGKLSLEPLNTRREGEEDDGLVHHDSD-SESPTNCP----AGVL 120

Query: 121 GGNDSGHHFTGSSS---SSSCRSSSSGCRSGSITEEEEDE-----GDDDCLEDWEAFADT 180
            GNDSG +FTGSSS   SSS  SSS GC SG+ITEEEE+E      DD CL+DWEA AD 
Sbjct: 121 CGNDSGTNFTGSSSGGSSSSSSSSSGGCCSGNITEEEEEEEEGEDDDDGCLDDWEAMADA 180

Query: 181 LIATDKQHDQCSESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNGRAWR 240
           L A DK  + CS+S P   V+ + GS         +G  +S  E  R+    S + RAWR
Sbjct: 181 LAADDKHENPCSDSPPV--VLPREGS--------NLGSPNSKPESSRLVPWGSGSNRAWR 240

Query: 241 PDDADRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFL 300
            DDA RPQSLP LSKQ S+PN DRR   GGVPW   G +  P+ CPIC EDLDLTD+NFL
Sbjct: 241 ADDAFRPQSLPNLSKQHSMPNPDRRC-VGGVPW---GRISTPSPCPICCEDLDLTDTNFL 300

Query: 301 PCPCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISRS 349
           PC CGFRLCLFCHKRILEEDGRCPGCRKPY+ +P + E + H GS T  LARSCSMI RS
Sbjct: 301 PCFCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVHGGSLTLRLARSCSMIERS 337

[Close]
BLAST of Cp4.1LG18g08170 vs. TrEMBL
Match: V4THX1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020913mg PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 8.3e-83
Identity = 196/363 (53.99%), Postives = 236/363 (65.01%), Query Frame = 1 

Query: 1   MVTDSIA-NASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSR-GAIKNKKWSE 60
           MV+DSI  NA I+ APN+RD    KKR  R++KLKQ KLDVRREQWLS+ GA+K+K   E
Sbjct: 1   MVSDSITHNAPIASAPNSRDFS-KKKRTNRSAKLKQCKLDVRREQWLSQVGAVKSKCCKE 60

Query: 61  EDNRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGG 120
           + N    E  +++E+       + RR+    +D    HH   SESPSNSP    +S+L G
Sbjct: 61  DQNGARKERARSLEN-------LRRRDEDNSNDSGSMHHDSDSESPSNSPT---NSLLCG 120

Query: 121 N---DSGHHFTGSSSSSSCRSSSS--GCRSGSITEEEEDEGDDDCLEDWEAFADTLIATD 180
           N   + G +F GSSSSSS  S SS  GC SGSITEEEE++G   CL+DWEA AD L A D
Sbjct: 121 NSGTNPGTNFIGSSSSSSSVSGSSGGGCCSGSITEEEEEDG---CLDDWEAVADALAADD 180

Query: 181 ------KQHDQ-CSESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNG-R 240
                  +HD+ CS+S     +  Q  S  +  N L +    S  +  R+    S N  R
Sbjct: 181 DNNKQEPEHDRSCSQSPSESQLSVQSDSLHELANGLSLDSVKSMPDGARMVPSVSENNRR 240

Query: 241 AWRPDDADRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDS 300
           AWRPDDA RPQSLP L+KQ S P  DR FG GGVPWAC  V+  P+SCPIC+EDLD TDS
Sbjct: 241 AWRPDDAFRPQSLPNLAKQRSFPAADRHFGQGGVPWACNNVLAAPSSCPICYEDLDYTDS 300

Query: 301 NFLPCPCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMI 349
           +FLPC CGFRLCLFCHKRILEEDGRCPGCRKPY+ D  ++E     GS TF LARSCSMI
Sbjct: 301 SFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVESEAIVQGGSMTFRLARSCSMI 349

[Close]
BLAST of Cp4.1LG18g08170 vs. TrEMBL
Match: A0A067G2Y2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018850mg PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.4e-82
Identity = 202/363 (55.65%), Postives = 237/363 (65.29%), Query Frame = 1 

Query: 1   MVTDSIA-NASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSR-GAIKNKKWSE 60
           MV+DSI  NA I+ APN+RD    KKR  R++KLKQ KLDVRREQWLS+ GA+K+K   E
Sbjct: 1   MVSDSITHNAPIASAPNSRDFS-KKKRTNRSAKLKQCKLDVRREQWLSQVGAVKSKCCKE 60

Query: 61  EDNRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGG 120
           + N    E  +++E+ K       R E    D  S+HH SD SESPSNSP +   S+L G
Sbjct: 61  DQNGARKESARSLENLK------PRDEDNSNDSGSMHHDSD-SESPSNSPTN---SLLCG 120

Query: 121 NDS---GHHFTGSSSSSSCRSSSSG--CRSGSITEEEEDEGDDDCLEDWEAFADTLIATD 180
           N     G +F GSSSSSS  S SSG  C SGSITEEEE++G   CL+DWEA AD L A D
Sbjct: 121 NSGTNPGTNFIGSSSSSSSVSGSSGGGCCSGSITEEEEEDG---CLDDWEAVADALAADD 180

Query: 181 ---KQHDQCSESSPRGDVVSQLGSCEDSRNELGVG---DGDSSIEHGR--IARRASMNGR 240
              KQ  +   S  +    SQL    DS +EL  G   D   S+  G   +   +  N R
Sbjct: 181 DNNKQEPEHDRSCSQSPSESQLSVKSDSLHELANGLSLDSVKSMPDGARMVPSVSENNRR 240

Query: 241 AWRPDDADRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDS 300
           AWRPDDA RPQSLP L+KQ S P  DR FG GGVPWAC  V+  P+SCPIC+EDLD TDS
Sbjct: 241 AWRPDDAFRPQSLPNLAKQRSFPAADRHFGQGGVPWACNNVLAAPSSCPICYEDLDYTDS 300

Query: 301 NFLPCPCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMI 349
           +FLPC CGFRLCLFCHKRILEEDGRCPGCRKPY+ D  ++E     GS TF LARSCSMI
Sbjct: 301 SFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVESEAIVQGGSMTFRLARSCSMI 349

[Close]
BLAST of Cp4.1LG18g08170 vs. TAIR10
Match: AT3G48070.2 (AT3G48070.2 RING/U-box superfamily protein)

HSP 1 Score: 245.0 bits (624), Expect = 7.0e-65
Identity = 167/358 (46.65%), Postives = 210/358 (58.66%), Query Frame = 1 

Query: 1   MVTDSIANASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEED 60
           M++DSI NAS + AP ARD    KKR  R++KLKQSKL +RREQWLS+ A+ NK   EE 
Sbjct: 1   MISDSITNASATSAPTARDFG-KKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEE- 60

Query: 61  NRLESEVVKTVEDDKLSSKKINRREIG------EEDDRSVHHHSDCSESPSNSPPSIGSS 120
             +ES       + ++ S+K ++R++       +ED+   H H    ES SNSP    +S
Sbjct: 61  --MES-------NRRIGSEKPDQRDLPRPVENLDEDNNGTHRHESFIESLSNSP----NS 120

Query: 121 ILGGNDSGHHFTGSSSSSSCRSSSSGCRSGSITEEEEDEGDDDCLEDWEAFADTLIATDK 180
           IL G +S  +F+ SSSS S      G  SG+ITE EED  DD CL+DWEA AD L A D+
Sbjct: 121 ILSGMNSIPNFSSSSSSGS-----GGSCSGNITE-EEDADDDGCLDDWEAIADALAADDE 180

Query: 181 QHDQCSESSPRGDVVSQLGSC---EDSRNELGVGDGDSSIEHGRI--ARRASMNGRAWRP 240
           +H++  E+ P         SC   ED +    +G  D  +   +    RR   + +AWRP
Sbjct: 181 KHEK--ENPPE--------SCQEHEDIKQSALIGGADVVLRDAKADSQRRKQKSNQAWRP 240

Query: 241 DDADRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLP 300
           DD  RPQ LP L KQ S P  +  F           V  VP+SCPIC+EDLDLTDSNFLP
Sbjct: 241 DDKLRPQGLPNLEKQRSFPVMNLHF---------SSVTVVPSSCPICYEDLDLTDSNFLP 300

Query: 301 CPCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISR 348
           CPCGFRLCLFCHK I + DGRCPGCRKPY+R+    E +   G  T  LARS SM  R
Sbjct: 301 CPCGFRLCLFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCR 318

[Close]
BLAST of Cp4.1LG18g08170 vs. TAIR10
Match: AT5G62910.1 (AT5G62910.1 RING/U-box superfamily protein)

HSP 1 Score: 244.6 bits (623), Expect = 9.1e-65
Identity = 165/354 (46.61%), Postives = 208/354 (58.76%), Query Frame = 1 

Query: 1   MVTDSIANASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEED 60
           M+TDSI NAS + AP        KKR  +++K+KQ+KL +RREQWLS+ A+ NK+  EE 
Sbjct: 1   MITDSITNASATSAPRDSG---KKKRNNKSAKMKQNKLGLRREQWLSQVAVSNKEVKEER 60

Query: 61  NRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGGND 120
           +   S+       DK+      RRE       ++ HH    ESPSNS        +GG  
Sbjct: 61  SVNRSQKPHHESSDKV------RREEDNNGGNNLLHHESFMESPSNSS-------VGGTY 120

Query: 121 SGHHFTGSSSSSSCRSSSSGCRSGSITEEEE-DEGDDDCLEDWEAFADTLIATDK--QHD 180
           S  +F+G SS SS  SSSSG  SG+ITEEE  D+ DD C++DWEA AD L A ++  +  
Sbjct: 121 SSTNFSGRSSRSS--SSSSGFCSGNITEEENVDDDDDGCVDDWEAVADALAAEEEIEKKS 180

Query: 181 QCSESSPRGDVVSQLGS--CEDSRNELG--VGDGDSSIEHGRIARRASMNGRAWRPDDAD 240
           +  ES      V Q  S  C+ S ++    VG  D   E  R++ R   + RAWR DD  
Sbjct: 181 RPLESVKEQVSVGQSASNVCDSSISDASDVVGVEDPKQECLRVSSRKQTSNRAWRLDDDL 240

Query: 241 RPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCG 300
           RPQ LP L+KQLS P  D+RF            V +P+SCPIC+EDLDLTDSNFLPCPCG
Sbjct: 241 RPQGLPNLAKQLSFPELDKRFSS----------VAIPSSCPICYEDLDLTDSNFLPCPCG 300

Query: 301 FRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISR 348
           FRLCLFCHK I + DGRCPGCRKPY+R+    ET+   G  T  LARS SM  +
Sbjct: 301 FRLCLFCHKTICDGDGRCPGCRKPYERNMVKAETSIQGGGLTIRLARSSSMFCK 326

[Close]
BLAST of Cp4.1LG18g08170 vs. TAIR10
Match: AT1G74870.1 (AT1G74870.1 RING/U-box superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 7.1e-17
Identity = 94/329 (28.57%), Postives = 145/329 (44.07%), Query Frame = 1 

Query: 23  SKKRRAR-NSKLKQSKLDVRREQWLSRGAIKNKKWSEEDNRLESEVVKTVEDDKLSSKKI 82
           SKKR+A    KLKQ K+D RR+QW+S+    N    E   RL S +      +KL+ +K 
Sbjct: 20  SKKRKANWFCKLKQWKIDARRKQWISQWKKANVDEEEIGRRLRSLL------EKLTDQKA 79

Query: 83  NRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGGNDSGHHFTGSSSSSSCRSSSSGC 142
            R +  +++D  +    + + S ++SP    +S+L   DS              S    C
Sbjct: 80  WRIDYDDDEDDEID--LERTSSFASSP----TSVLKRKDSV-------------SGDCFC 139

Query: 143 RSGSITEEEEDEGDDDCLEDWEAFADTLIATDKQHDQCSESSPRGDVVSQLGSCEDSRNE 202
            S  +TEEEE E  DD  ++W+ F D L + +  +++ S               ED   E
Sbjct: 140 CSKQMTEEEE-EVFDDAYDNWDGFKDALNSFENDNNESSRLVT-----------EDFEQE 199

Query: 203 LGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQSLPTLSKQLSLPNTDRRFGCGGVPW 262
                 D+S    +  + A+   +           ++   S +    N++++ G G    
Sbjct: 200 EEDLIPDTSQRMNKCKQEAAPGNQT----------TIHRNSNKKKRSNSEKQRGDGD--- 259

Query: 263 ACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRILEEDGRCPGCRKPYDR- 322
                      CPIC E +D TD  F PC CGFR+CLFCH +I E + RCP CRK Y + 
Sbjct: 260 ---------EECPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYKKT 289

Query: 323 -DPADNETNEHSGSPTFPLARSCSMISRS 349
              +     +  G  T PL+ S   + R+
Sbjct: 320 SKKSGEVGYQQRGRGTIPLSPSFRGLDRA 289

[Close]
BLAST of Cp4.1LG18g08170 vs. TAIR10
Match: AT3G45630.1 (AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 68.9 bits (167), Expect = 6.8e-12
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1 

Query: 272 SCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRIL------EEDGRCPGCRKPYDRD 322
           +CP+C E++DLTD    PC CG+++C++C   I+      + +GRCP CR PYD++
Sbjct: 8   TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPYDKE 63

[Close]
BLAST of Cp4.1LG18g08170 vs. TAIR10
Match: AT5G60170.2 (AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1 

Query: 272 SCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRILEE------DGRCPGCRKPYDRD 322
           +CP+C E++DLTD    PC CG+++C++C   I++       +GRCP CR PYD++
Sbjct: 8   TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYDKE 63

[Close]
BLAST of Cp4.1LG18g08170 vs. NCBI nr
Match: gi|778655813|ref|XP_004138290.2| (PREDICTED: uncharacterized protein LOC101211244 [Cucumis sativus])

HSP 1 Score: 604.0 bits (1556), Expect = 1.7e-169
Identity = 305/349 (87.39%), Postives = 324/349 (92.84%), Query Frame = 1 

Query: 1   MVTDSIANASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEED 60
           MVTDSIANASISLAPNARDLPL KK+R RNSKLKQSKLDVRREQWLSRGA+KNKKW+EED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGGND 120
           NRL+S V+KT +DD LSS+KIN REIGEE+DRSVHHHSD S+SPSNSPPS+GSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGHHFTGSSSSSSCRSSSSGCRSGSITEE-EEDEGDDDCLEDWEAFADTLIATDKQHDQC 180
           SG HFTGSSSSSSCRSSSSGCRSGSITEE EE+EGDDDCL+DWEA AD L ATDKQHDQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQHDQC 180

Query: 181 SESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQSLP 240
           SESSPRG+V+SQL SC D RNELGVGDGDSS+E GRI +RASMN RAWRPDDA RPQSLP
Sbjct: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRLCLF 300
           TLSKQLSLP TDRRFGCGGV WACGGV+PVPTSCPICFEDLDLTDS+FLPC CGFRLCLF
Sbjct: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISRS 349
           CHKRILEEDGRCPGCRKPYDRDPADNETN  +GSPT PLARSCSMISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 349

[Close]
BLAST of Cp4.1LG18g08170 vs. NCBI nr
Match: gi|659105645|ref|XP_008453149.1| (PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo])

HSP 1 Score: 603.6 bits (1555), Expect = 2.2e-169
Identity = 306/349 (87.68%), Postives = 324/349 (92.84%), Query Frame = 1 

Query: 1   MVTDSIANASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEED 60
           MVTDSIANASISLAPNARDLPL KK+R RNSKLKQSKLDVRREQWLSRGA+KNKKW+EED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGGND 120
           NRL+S V+KT +DD LSS+KIN REIGEE+DRSVHHHSD S+SPSNSPPS+GSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGHHFTGSSSSSSCRSSSSGCRSGSITEE-EEDEGDDDCLEDWEAFADTLIATDKQHDQC 180
           SG HFTGSSSSSSCRSSSSGCRSGSITEE EE+EGDDDCL+DWEA AD L ATDKQ DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQSLP 240
           SESSPRG+VVSQL SC D RNELGVGDGDS++E GRI +RASMN RAWRPDDA RPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRLCLF 300
           TLSKQLSLPNTDRRFGCGGVPWACGGV+PVPTSCPICFEDLDLTDS+FLPC CGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISRS 349
           CHKRILEEDGRCPGCRKPYDRDPADNETN   GSPT PLARSCSMISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISRS 349

[Close]
BLAST of Cp4.1LG18g08170 vs. NCBI nr
Match: gi|700208527|gb|KGN63623.1| (hypothetical protein Csa_1G006330 [Cucumis sativus])

HSP 1 Score: 560.1 bits (1442), Expect = 2.8e-156
Identity = 280/321 (87.23%), Postives = 298/321 (92.83%), Query Frame = 1 

Query: 29  RNSKLKQSKLDVRREQWLSRGAIKNKKWSEEDNRLESEVVKTVEDDKLSSKKINRREIGE 88
           RNSKLKQSKLDVRREQWLSRGA+KNKKW+EEDNRL+S V+KT +DD LSS+KIN REIGE
Sbjct: 3   RNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIGE 62

Query: 89  EDDRSVHHHSDCSESPSNSPPSIGSSILGGNDSGHHFTGSSSSSSCRSSSSGCRSGSITE 148
           E+DRSVHHHSD S+SPSNSPPS+GSSILGGNDSG HFTGSSSSSSCRSSSSGCRSGSITE
Sbjct: 63  ENDRSVHHHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITE 122

Query: 149 E-EEDEGDDDCLEDWEAFADTLIATDKQHDQCSESSPRGDVVSQLGSCEDSRNELGVGDG 208
           E EE+EGDDDCL+DWEA AD L ATDKQHDQCSESSPRG+V+SQL SC D RNELGVGDG
Sbjct: 123 EEEEEEGDDDCLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGDG 182

Query: 209 DSSIEHGRIARRASMNGRAWRPDDADRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVV 268
           DSS+E GRI +RASMN RAWRPDDA RPQSLPTLSKQLSLP TDRRFGCGGV WACGGV+
Sbjct: 183 DSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGVI 242

Query: 269 PVPTSCPICFEDLDLTDSNFLPCPCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNET 328
           PVPTSCPICFEDLDLTDS+FLPC CGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNET
Sbjct: 243 PVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNET 302

Query: 329 NEHSGSPTFPLARSCSMISRS 349
           N  +GSPT PLARSCSMISRS
Sbjct: 303 NVLAGSPTLPLARSCSMISRS 323

[Close]
BLAST of Cp4.1LG18g08170 vs. NCBI nr
Match: gi|1009132894|ref|XP_015883615.1| (PREDICTED: uncharacterized protein LOC107419367 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 386.0 bits (990), Expect = 7.2e-104
Identity = 223/352 (63.35%), Postives = 259/352 (73.58%), Query Frame = 1 

Query: 1   MVTDSIANASIS-LAPNARD-LPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSE 60
           M++DSI +ASIS L PN  +   L KK+RAR +KLKQ KLDVRREQWLS+GA+KNK   E
Sbjct: 1   MISDSITSASISSLIPNNNNGRDLGKKKRARTAKLKQCKLDVRREQWLSQGAVKNKGCKE 60

Query: 61  EDNRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGG 120
           E N     VV+T + +  S   +  R  GEEDDRSVHHH   SESPSNSP S+ SS+LG 
Sbjct: 61  EPNG----VVQTRKANNRSLDNLEMRPGGEEDDRSVHHHDSDSESPSNSPTSLTSSVLGT 120

Query: 121 NDSGHHFTGSSSSSSCRSSSSG-CRSGSITEEEEDEGDDDCLEDWEAFADTLIATDKQHD 180
           NDSG +FTGSSSSSS  SSSSG C SGSITEEEE EGDD CL+DWEA AD L A +K  +
Sbjct: 121 NDSGTNFTGSSSSSSSSSSSSGGCCSGSITEEEE-EGDDGCLDDWEAVADALAADEKPQN 180

Query: 181 QCSESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQS 240
            CSES P    + +L S     +  G+G G S     +   RAS N RAWRPDDA RPQS
Sbjct: 181 PCSESPPEHQSIGKLVSPCQMTHGPGLGIGIS-----KPVPRASGNTRAWRPDDAFRPQS 240

Query: 241 LPTLSKQLSLPNTDRR-FGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRL 300
           LP LSKQLSLPN++R+ +GCGGVPWAC  V+P P+SCPIC+EDLD TDS+FLPC CGFRL
Sbjct: 241 LPNLSKQLSLPNSNRQHYGCGGVPWACNNVMPAPSSCPICYEDLDFTDSSFLPCLCGFRL 300

Query: 301 CLFCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISRS 349
           CLFCHKRILEEDGRCPGCRKPY+R+  + E + H GS TF LARSCSMI+RS
Sbjct: 301 CLFCHKRILEEDGRCPGCRKPYERNAVEAEPSVHGGSLTFRLARSCSMITRS 342

[Close]
BLAST of Cp4.1LG18g08170 vs. NCBI nr
Match: gi|703066507|ref|XP_010087730.1| (CCR4-NOT transcription complex subunit 4 [Morus notabilis])

HSP 1 Score: 370.5 bits (950), Expect = 3.1e-99
Identity = 207/348 (59.48%), Postives = 254/348 (72.99%), Query Frame = 1 

Query: 1   MVTDSIANASI-SLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWSEE 60
           M++DS+ANASI S A N++DL   KK+RAR +KLKQ KLDVRREQWLS+GA+KNK   EE
Sbjct: 1   MISDSVANASIPSAAYNSKDL--GKKKRARTAKLKQCKLDVRREQWLSQGAVKNKCCKEE 60

Query: 61  DNRLESEVVKTVEDDKLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSIGSSILGGN 120
            N + +      +++  S   +  R  G E+D  +HH+    ES S+SP S+ S +LGGN
Sbjct: 61  TNGVRT----GNKENNRSLGNLEARSRGGENDGLIHHNDSDLESLSSSPTSLNSGVLGGN 120

Query: 121 DSGHHFTGSSSSSSCRSSSSGCRSGSITEEEEDEGDDDCLEDWEAFADTLIATDKQHDQC 180
           DSG +FTGSSSSSS  +SS GC SGSITEEEE+  DD CL+DWEA AD L A DKQ +QC
Sbjct: 121 DSGTNFTGSSSSSSSSTSSGGCCSGSITEEEEE--DDGCLDDWEAVADALAANDKQENQC 180

Query: 181 SESSPRGDVVSQLGSCEDSRNELGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQSLP 240
           SES P  + +S+  S   + N  GV  G+S  E  R   R++ N RAWRPDDA RPQSLP
Sbjct: 181 SESPPEREQISETVSACQATN--GVSGGNSKPEFTRTEPRSAGNSRAWRPDDAFRPQSLP 240

Query: 241 TLSKQLSLPNTDRR-FGCGGVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRLCL 300
            LSKQLSLPN+DR+ +GCGGVPWAC  ++  P+SCPIC+EDLDLTD++FLPC CGFRLCL
Sbjct: 241 NLSKQLSLPNSDRQHYGCGGVPWACNNIMVPPSSCPICYEDLDLTDTSFLPCLCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMIS 347
           FCHKRIL+EDGRCPGCRKPY+R+  + E     GS TF LARSCSMI+
Sbjct: 301 FCHKRILDEDGRCPGCRKPYERNAVEREARVPGGSLTFRLARSCSMIT 338

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g08170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CNOT4_MOUSE1.5e-1354.55CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2[more]
CNOT4_HUMAN1.5e-1354.55CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3[more]
NOT4_YEAST2.9e-1254.00General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisia... [more]
YAC4_SCHPO1.2e-1050.00Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharo... [more]
BLAST of Cp4.1LG18g08170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP94_CUCSA1.9e-15687.23Uncharacterized protein OS=Cucumis sativus GN=Csa_1G006330 PE=4 SV=1[more]
W9QL69_9ROSA2.2e-9959.48CCR4-NOT transcription complex subunit 4 OS=Morus notabilis GN=L484_008926 PE=4 ... [more]
V7CB10_PHAVU1.7e-8355.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G196200g PE=4 SV=1[more]
V4THX1_9ROSI8.3e-8353.99Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020913mg PE=4 SV=1[more]
A0A067G2Y2_CITSI1.4e-8255.65Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018850mg PE=4 SV=1[more]
BLAST of Cp4.1LG18g08170 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48070.27.0e-6546.65 RING/U-box superfamily protein[more]
AT5G62910.19.1e-6546.61 RING/U-box superfamily protein[more]
AT1G74870.17.1e-1728.57 RING/U-box superfamily protein[more]
AT3G45630.16.8e-1242.86 RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT5G60170.21.5e-1142.86 RNA binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG18g08170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778655813|ref|XP_004138290.2|1.7e-16987.39PREDICTED: uncharacterized protein LOC101211244 [Cucumis sativus][more]
gi|659105645|ref|XP_008453149.1|2.2e-16987.68PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo][more]
gi|700208527|gb|KGN63623.1|2.8e-15687.23hypothetical protein Csa_1G006330 [Cucumis sativus][more]
gi|1009132894|ref|XP_015883615.1|7.2e-10463.35PREDICTED: uncharacterized protein LOC107419367 isoform X1 [Ziziphus jujuba][more]
gi|703066507|ref|XP_010087730.1|3.1e-9959.48CCR4-NOT transcription complex subunit 4 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g08170.1Cp4.1LG18g08170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 273..315
score: 9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 271..327
score: 9.3
NoneNo IPR availablePANTHERPTHR12603CCR4-NOT TRANSCRIPTION COMPLEX RELATEDcoord: 1..347
score: 3.0E
NoneNo IPR availablePANTHERPTHR12603:SF5RING/U-BOX DOMAIN-CONTAINING PROTEINcoord: 1..347
score: 3.0E
NoneNo IPR availablePFAMPF14570zf-RING_4coord: 273..319
score: 1.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 271..323
score: 7.07

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g08170Cucsa.197300Cucumber (Gy14) v1cgycpeB0556
Cp4.1LG18g08170CmaCh10G001560Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g08170CmaCh11G001830Cucurbita maxima (Rimu)cmacpeB127
Cp4.1LG18g08170CmoCh11G001250Cucurbita moschata (Rifu)cmocpeB109
Cp4.1LG18g08170CmoCh10G001680Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g08170Cla019155Watermelon (97103) v1cpewmB373
Cp4.1LG18g08170Csa1G006330Cucumber (Chinese Long) v2cpecuB361
Cp4.1LG18g08170MELO3C017131Melon (DHL92) v3.5.1cpemeB328
Cp4.1LG18g08170ClCG06G016630Watermelon (Charleston Gray)cpewcgB336
Cp4.1LG18g08170CSPI01G01830Wild cucumber (PI 183967)cpecpiB361
Cp4.1LG18g08170Lsi06G015120Bottle gourd (USVL1VR-Ls)cpelsiB298
Cp4.1LG18g08170MELO3C017131.2Melon (DHL92) v3.6.1cpemedB386
Cp4.1LG18g08170CsaV3_1G001880Cucumber (Chinese Long) v3cpecucB0442
Cp4.1LG18g08170Bhi02G000295Wax gourdcpewgoB0459
Cp4.1LG18g08170Carg10379Silver-seed gourdcarcpeB0508
Cp4.1LG18g08170Carg18155Silver-seed gourdcarcpeB0871
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g08170Cp4.1LG04g15230Cucurbita pepo (Zucchini)cpecpeB361
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g08170Cucurbita moschata (Rifu)cmocpeB388
Cp4.1LG18g08170Wild cucumber (PI 183967)cpecpiB357
Cp4.1LG18g08170Cucumber (Chinese Long) v2cpecuB358
Cp4.1LG18g08170Bottle gourd (USVL1VR-Ls)cpelsiB287
Cp4.1LG18g08170Watermelon (Charleston Gray)cpewcgB319
Cp4.1LG18g08170Watermelon (Charleston Gray)cpewcgB333
Cp4.1LG18g08170Watermelon (97103) v1cpewmB361
Cp4.1LG18g08170Watermelon (97103) v1cpewmB363
Cp4.1LG18g08170Melon (DHL92) v3.5.1cpemeB323
Cp4.1LG18g08170Cucumber (Gy14) v2cgybcpeB047
Cp4.1LG18g08170Cucumber (Gy14) v2cgybcpeB053
Cp4.1LG18g08170Cucumber (Gy14) v2cgybcpeB624
Cp4.1LG18g08170Melon (DHL92) v3.6.1cpemedB376
Cp4.1LG18g08170Melon (DHL92) v3.6.1cpemedB381
Cp4.1LG18g08170Silver-seed gourdcarcpeB0695
Cp4.1LG18g08170Silver-seed gourdcarcpeB1399
Cp4.1LG18g08170Cucumber (Chinese Long) v3cpecucB0435
Cp4.1LG18g08170Cucumber (Chinese Long) v3cpecucB0464
Cp4.1LG18g08170Wax gourdcpewgoB0448
Cp4.1LG18g08170Cucurbita pepo (Zucchini)cpecpeB028
Cp4.1LG18g08170Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG18g08170Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG18g08170Cucurbita pepo (Zucchini)cpecpeB350
Cp4.1LG18g08170Cucumber (Gy14) v1cgycpeB0202
Cp4.1LG18g08170Cucurbita maxima (Rimu)cmacpeB230
Cp4.1LG18g08170Cucurbita maxima (Rimu)cmacpeB427
Cp4.1LG18g08170Cucurbita moschata (Rifu)cmocpeB197