CsaV3_1G001210 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G001210
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 683373 .. 684228 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCTTGTGAAGTTATGATTCCTTTTAAATTATGGCTATTTTCTGCTGGCTTTGAAGATGCCACCAGTGATCTTTGGATATTTACTTCAGGTACATCGATGTTGATCAAAGGTGGTAAAAAATGTAAAATAAAAAAGGTTCCGAAAGATTGGGATTATGCCATCATGCTAAGTTTGTTCAATCTTAACTTATGGTCAACTTGGTTATATCTTATAACAAACAGATTGATTATTCTTGAAGTTAGGATTGAGATTTTGTCCATCGTTTTAAGTATTTATGCTTGCACTTCGATAGAAAACTGGAGGATGTTGCTATATCTAAAAAGCAAATGACTATAGAAAGGAAGAAATAACTAATTGTCTAAAATTCAAATGTCAACAACCACTTTATTTCTGAAACTGTGAAAAGTAAGTTCTCTGTATCTTGATTGATATTGGTTAAACAAAAAAACTGTCTTTCATCTAGAGAATACTTTTTTTTTTTTTCTTTCTATAGCTGAAGATTTGAAGATTCTTTGTTCTTTCTTGCTCAGGGACCAAAAAGTTCTTATGGTTAAGACGATAACTCTTTTCGAAGTGTTGCATTTTGATTGTTGCTTTAATGCAGCATATTCAGGTTAGAAATGGCAGTTGATAATTACATTCAATTTTGATATTCATAGCCTTGTTTTGACTTTTGACATGTATCTGACAACATGTTTACCTATACGGCTATACTACAACTACAAAGAACTATGTCCAGTTTCACTAGCACACACTAAATAGTAGGTGACTATCAGAAATTTGGTTTGTTATTTTTATATATTCAAAGATTAACGAAACACTGTTCTCTTGTTTGTCGACAGATTTTTGA

mRNA sequence

ATGTCACCTTGTGAAGTTATGATTCCTTTTAAATTATGGCTATTTTCTGCTGGCTTTGAAGATGCCACCAGTGATCTTTGGATATTTACTTCAGCTGAAGATTTGAAGATTCTTTGTTCTTTCTTGCTCAGGGACCAAAAAGTTCTTATGGTTAAGACGATAACTCTTTTCGAAGTGTTGCATTTTGATTGTTGCTTTAATGCAGCATATTCAGATTTTTGA

Coding sequence (CDS)

ATGTCACCTTGTGAAGTTATGATTCCTTTTAAATTATGGCTATTTTCTGCTGGCTTTGAAGATGCCACCAGTGATCTTTGGATATTTACTTCAGCTGAAGATTTGAAGATTCTTTGTTCTTTCTTGCTCAGGGACCAAAAAGTTCTTATGGTTAAGACGATAACTCTTTTCGAAGTGTTGCATTTTGATTGTTGCTTTAATGCAGCATATTCAGATTTTTGA

Protein sequence

MSPCEVMIPFKLWLFSAGFEDATSDLWIFTSAEDLKILCSFLLRDQKVLMVKTITLFEVLHFDCCFNAAYSDF
Homology
[Close]
BLAST of CsaV3_1G001210 vs. NCBI nr
Match: KGN63549.1 (hypothetical protein Csa_1G004150 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MSPCEVMIPFKLWLFSAGFEDATSDLWIFTSAEDLKILCSFLLRDQKVLMVKTITLFEVL 60
          MSPCEVMIPFKLWLFSAGFEDATSDLWIFTSAEDLKILCSFLLRDQKVLMVKTITLFEVL
Sbjct: 1  MSPCEVMIPFKLWLFSAGFEDATSDLWIFTSAEDLKILCSFLLRDQKVLMVKTITLFEVL 60

Query: 61 HFDCCFNAAYSDF 74
          HFDCCFNAAYSDF
Sbjct: 61 HFDCCFNAAYSDF 73

[Close]
BLAST of CsaV3_1G001210 vs. TrEMBL
Match: tr|A0A0A0LRE9|A0A0A0LRE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004150 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.4e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MSPCEVMIPFKLWLFSAGFEDATSDLWIFTSAEDLKILCSFLLRDQKVLMVKTITLFEVL 60
          MSPCEVMIPFKLWLFSAGFEDATSDLWIFTSAEDLKILCSFLLRDQKVLMVKTITLFEVL
Sbjct: 1  MSPCEVMIPFKLWLFSAGFEDATSDLWIFTSAEDLKILCSFLLRDQKVLMVKTITLFEVL 60

Query: 61 HFDCCFNAAYSDF 74
          HFDCCFNAAYSDF
Sbjct: 61 HFDCCFNAAYSDF 73

The following BLAST results are available for this feature:
BLAST of CsaV3_1G001210 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63549.11.1e-34100.00hypothetical protein Csa_1G004150 [Cucumis sativus][more]
BLAST of CsaV3_1G001210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G001210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G001210 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRE9|A0A0A0LRE9_CUCSA7.4e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004150 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G001210.1CsaV3_1G001210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G001210CsGy1G001140Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G001210Silver-seed gourdcarcucB0395
CsaV3_1G001210Silver-seed gourdcarcucB0530
CsaV3_1G001210Silver-seed gourdcarcucB1047
CsaV3_1G001210Silver-seed gourdcarcucB1095
CsaV3_1G001210Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G001210Cucumber (Gy14) v2cgybcucB106
CsaV3_1G001210Cucumber (Gy14) v1cgycucB110
CsaV3_1G001210Cucumber (Gy14) v1cgycucB314
CsaV3_1G001210Cucumber (Gy14) v1cgycucB520
CsaV3_1G001210Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G001210Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G001210Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G001210Cucurbita maxima (Rimu)cmacucB0239
CsaV3_1G001210Cucurbita maxima (Rimu)cmacucB0478
CsaV3_1G001210Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G001210Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G001210Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G001210Cucurbita moschata (Rifu)cmocucB0227
CsaV3_1G001210Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G001210Cucurbita moschata (Rifu)cmocucB0468
CsaV3_1G001210Cucurbita moschata (Rifu)cmocucB0801
CsaV3_1G001210Cucurbita pepo (Zucchini)cpecucB0023
CsaV3_1G001210Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G001210Cucurbita pepo (Zucchini)cpecucB0473
CsaV3_1G001210Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G001210Wild cucumber (PI 183967)cpicucB001
CsaV3_1G001210Wild cucumber (PI 183967)cpicucB012
CsaV3_1G001210Wild cucumber (PI 183967)cpicucB131
CsaV3_1G001210Bottle gourd (USVL1VR-Ls)cuclsiB036
CsaV3_1G001210Bottle gourd (USVL1VR-Ls)cuclsiB049
CsaV3_1G001210Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G001210Melon (DHL92) v3.5.1cucmeB015
CsaV3_1G001210Melon (DHL92) v3.6.1cucmedB013
CsaV3_1G001210Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G001210Watermelon (Charleston Gray)cucwcgB002
CsaV3_1G001210Watermelon (Charleston Gray)cucwcgB006
CsaV3_1G001210Watermelon (Charleston Gray)cucwcgB028
CsaV3_1G001210Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G001210Watermelon (Charleston Gray)cucwcgB100
CsaV3_1G001210Watermelon (97103) v1cucwmB003
CsaV3_1G001210Watermelon (97103) v1cucwmB007
CsaV3_1G001210Watermelon (97103) v1cucwmB056
CsaV3_1G001210Watermelon (97103) v1cucwmB105
CsaV3_1G001210Watermelon (97103) v2cucwmbB012
CsaV3_1G001210Watermelon (97103) v2cucwmbB076
CsaV3_1G001210Watermelon (97103) v2cucwmbB093
CsaV3_1G001210Wax gourdcucwgoB009
CsaV3_1G001210Wax gourdcucwgoB060
CsaV3_1G001210Wax gourdcucwgoB103
CsaV3_1G001210Cucumber (Chinese Long) v3cuccucB002