CsaUNG019150 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaUNG019150
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Scaffold000113 : 254770 .. 255505 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAACAAGCACAACCCAACTTCATGACCAAAGCTTTTGAGAAAATTTCTAAGGGAACAATTGATCCAACCCTGTTTCAACACAAAGGAGTTGGTAATGAAGGGCAAGATAATGTTGCATTGACGCCATTGATAATCAATGGGGTAGAAGTAAAGTTGCATGAATCTGACTTGACAACCTATTGGCGATGGTTGAAGAAACAAAAAAGGCACAGGAAGAGCAAGAAAAGAAAGAAAAAGAAGAGAATGAAGAACCTGAAAGAAAAGAGAAATAAAAGAGAGGGAGGATGAGGAAGAAAGACTTAAAAGGGAGAAAATGGAAAAACAAGGCAAGAAAGATAAAGAGACATCATCATCTCCCATCATCCTAACTAAGTTTGAGAGGGTCACAAAAAAGGTCCAAGAGAAAAAGGAAAAGATGGCATATGGCCTCTTTAAACTTAAGGTCACAGTGTAGGGTGTTAAGGCCCTCGCACAAGCGAAGAAGGAAACAAAGTTAAAGGAGCGGAAAGAGCTCCTTAACAAAGTAGAAAAAGTAACCCTCTCCGTGAAGAAGGGTAAGGCAAAGAAAACTCATAGTGAAGAGTACGACAAGGAGATGGAAAAAGAATTAGAGGATGAAAGTCCCTTAGATGACGAAGTGGCCAAACCTTCAAAGAAGAAGAAGGTCACAATAAAGAAGAAGGTTTTGAACATGCAATTCGTCGAAAGGCAAGAAAGGTTCTCAAAGTGA

mRNA sequence

ATGTCGGAACAAGCACAACCCAACTTCATGACCAAAGCTTTTGAGAAAATTTCTAAGGGAACAATTGATCCAACCCTGTTTCAACACAAAGGAGTTGGTAATGAAGGGCAAGATAATGTTGCATTGACGCCATTGATAATCAATGGGGTAGAAGGTGTTAAGGCCCTCGCACAAGCGAAGAAGGAAACAAAGTTAAAGGAGCGGAAAGAGCTCCTTAACAAAGTAGAAAAAGTAACCCTCTCCGTGAAGAAGGGTAAGGCAAAGAAAACTCATAGTGAAGAGTACGACAAGGAGATGGAAAAAGAATTAGAGGATGAAAGTCCCTTAGATGACGAAGTGGCCAAACCTTCAAAGAAGAAGAAGGTCACAATAAAGAAGAAGGTTTTGAACATGCAATTCGTCGAAAGGCAAGAAAGGTTCTCAAAGTGA

Coding sequence (CDS)

ATGTCGGAACAAGCACAACCCAACTTCATGACCAAAGCTTTTGAGAAAATTTCTAAGGGAACAATTGATCCAACCCTGTTTCAACACAAAGGAGTTGGTAATGAAGGGCAAGATAATGTTGCATTGACGCCATTGATAATCAATGGGGTAGAAGGTGTTAAGGCCCTCGCACAAGCGAAGAAGGAAACAAAGTTAAAGGAGCGGAAAGAGCTCCTTAACAAAGTAGAAAAAGTAACCCTCTCCGTGAAGAAGGGTAAGGCAAAGAAAACTCATAGTGAAGAGTACGACAAGGAGATGGAAAAAGAATTAGAGGATGAAAGTCCCTTAGATGACGAAGTGGCCAAACCTTCAAAGAAGAAGAAGGTCACAATAAAGAAGAAGGTTTTGAACATGCAATTCGTCGAAAGGCAAGAAAGGTTCTCAAAGTGA

Protein sequence

MSEQAQPNFMTKAFEKISKGTIDPTLFQHKGVGNEGQDNVALTPLIINGVEGVKALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEVAKPSKKKKVTIKKKVLNMQFVERQERFSK*

Homology

[Close]

BLAST of CsaUNG019150 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 54  KALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEV 113
           KAL Q KK+ KL+E+KELLNK+++  +S KKGK +KT SEE  +E E++LED SPL+DEV
Sbjct: 6   KALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65

Query: 114 AKPSKKKKVTIKKKVLNMQFVERQERFSK 143
            KP  KKKVT+KK VL  QF +R+E   K
Sbjct: 66  VKP-LKKKVTVKKSVLKKQFDKRREEKEK 93

[Close]

BLAST of CsaUNG019150 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.4e-12
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 58  QAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEV 114
           Q KKE +LKE++ELLNKV+KVTL VKKGKAK+T SEE  +E+EK+LED SP++DEV
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEV 110

[Close]

BLAST of CsaUNG019150 vs. TrEMBL
Match: A0A0A0KN01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-10
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 61  KETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEVAKPSKKK 120
           +E   +ER+ELLNKV+K+ LSV++ K KKT SE  D E+EKELEDE+ L +EV KPS+K+
Sbjct: 2   REKGNREREELLNKVKKIALSVERDKTKKTPSELCD-ELEKELEDENSL-EEVIKPSRKR 61

Query: 121 KVTIKKKVLNMQF 134
           KVT+KK   ++ F
Sbjct: 62  KVTMKKVFQSLIF 72

[Close]

BLAST of CsaUNG019150 vs. TrEMBL
Match: A0A0A0K4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1


Query: 93  EEYDKEMEKELEDESPLDDEVAKPSKKKKVTIKKKVLNMQFVER 137
           EE  +E E++LED SPL+DEV KP KKKKVT+ KKVL  QFV+R
Sbjct: 6   EEIFEEFERKLEDLSPLEDEVVKPLKKKKVTVNKKVLKEQFVKR 49

[Close]

BLAST of CsaUNG019150 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 5.5e-18
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 54  KALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEV 113
           KAL Q KK+ KL+E+KELLNK+++  +S KKGK +KT SEE  +E E++LED SPL+DEV
Sbjct: 6   KALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65

Query: 114 AKPSKKKKVTIKKKVLNMQFVERQERFSK 143
            KP  KKKVT+KK VL  QF +R+E   K
Sbjct: 66  VKP-LKKKVTVKKSVLKKQFDKRREEKEK 93

[Close]

BLAST of CsaUNG019150 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 47/85 (55.29%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 55  ALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEVA 114
           ALA+ KKE KL++ +ELLNKV+K+ LSV+KGK K+   EE+ KE EKE+++ SPL+D V 
Sbjct: 36  ALAEGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVV 95

Query: 115 -KPSKKKKVTIKKKVLNMQFVERQE 139
            +P+KK+ VT+KKKVL  QF +R++
Sbjct: 96  ERPAKKRNVTMKKKVLRDQFAKRRK 120

[Close]

BLAST of CsaUNG019150 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 48/110 (43.64%), Postives = 74/110 (67.27%), Query Frame = 1


Query: 33  GNEGQDNVALTPLIINGVEGVKALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHS 92
           G +G+    L  + +   +G+KAL + KKE KL+E++ELLNKV+KV LSV+K K +KT  
Sbjct: 35  GEDGESRTGLLKIKVKA-QGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKTF- 94

Query: 93  EEYDKEMEKELEDESPLDDEVAKPSKKKKVTIKKKVLNMQFVERQERFSK 143
           EE+ +E +KE+E+ SPL+DEV + S K     KK+++  Q  +R+E+  K
Sbjct: 95  EEHCEEFKKEIEELSPLEDEVVEKSSK-----KKRIMEGQDDKRKEKKEK 137

[Close]

BLAST of CsaUNG019150 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1


Query: 10  MTKAFEKISKGTIDPTLFQHKGVGNEGQDNVALTPLIINGVE------------GVKALA 69
           MT+ FE ++    + T   H+ +  E Q+  +L  L IN +E              KALA
Sbjct: 1   MTRDFEGMTSTNRNLT---HE-IEEEKQEEGSLKSLKINEIEVHLSEDNIDAQSRRKALA 60

Query: 70  QAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPL-DDEVAKP 122
             KKETKL+E++ELLNKVEKV LS +KGK KKT +EEY KE E+E+E+ SP  D+EV KP
Sbjct: 61  DEKKETKLREQEELLNKVEKVALSTEKGKTKKT-TEEYCKEFEREVEELSPFKDEEVVKP 120

[Close]

BLAST of CsaUNG019150 vs. NCBI nr
Match: gi|659123312|ref|XP_008461598.1| (PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 1   MSEQAQPNFMTKAFEKISKGTIDPTLFQHKGVGNEGQDNVALTPLIINGVEGVKALAQAK 60
           +++QAQ N MT  F+K+++  +  T    K +             I    +GVKALA+ K
Sbjct: 29  VTKQAQINTMTTNFDKVARKPLKKTKKLKKWLLK-----------IKVKAQGVKALAEEK 88

Query: 61  KETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEVAKPSKKK 120
           KE+ L+ER+ELLN+V+K+ L V K K K+  ++ YDKE EKELE+   L+D V +   KK
Sbjct: 89  KESMLREREELLNEVDKMALLVNKSKGKEKTTDGYDKEFEKELEEFISLEDGVVEKQPKK 138

Query: 121 K 122
           K
Sbjct: 149 K 138

The following BLAST results are available for this feature:

BLAST of CsaUNG019150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W9_CUCSA	3.8e-18	58.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1	[more]
A0A0A0L7S0_CUCSA	5.4e-12	69.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1	[more]
A0A0A0KN01_CUCSA	5.0e-10	56.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1	[more]
A0A0A0K4R7_CUCSA	3.4e-06	65.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1	[more]

BLAST of CsaUNG019150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189199\|gb\|KGN44432.1\|	5.5e-18	58.43	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]
gi\|659083323\|ref\|XP_008442290.1\|	5.2e-16	55.29	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|659130998\|ref\|XP_008465464.1\|	1.4e-13	43.64	PREDICTED: DNA ligase 1-like [Cucumis melo]	[more]
gi\|659109371\|ref\|XP_008454680.1\|	1.8e-13	47.20	PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo]	[more]
gi\|659123312\|ref\|XP_008461598.1\|	2.6e-12	40.50	PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucum...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaUNG019150.1	CsaUNG019150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 54..74 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaUNG019150	CsGy5G010210	Cucumber (Gy14) v2	cgybcuB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaUNG019150	Cucurbita maxima (Rimu)	cmacuB706
CsaUNG019150	Cucurbita maxima (Rimu)	cmacuB707
CsaUNG019150	Cucurbita moschata (Rifu)	cmocuB697
CsaUNG019150	Wild cucumber (PI 183967)	cpicuB180
CsaUNG019150	Melon (DHL92) v3.5.1	cumeB266
CsaUNG019150	Watermelon (Charleston Gray)	cuwcgB266
CsaUNG019150	Watermelon (97103) v1	cuwmB283
CsaUNG019150	Cucurbita pepo (Zucchini)	cpecuB397
CsaUNG019150	Cucurbita pepo (Zucchini)	cpecuB398
CsaUNG019150	Bottle gourd (USVL1VR-Ls)	culsiB244
CsaUNG019150	Melon (DHL92) v3.6.1	cumedB256
CsaUNG019150	Silver-seed gourd	carcuB0197
CsaUNG019150	Silver-seed gourd	carcuB0687
CsaUNG019150	Watermelon (97103) v2	cuwmbB263
CsaUNG019150	Wax gourd	cuwgoB355