CsGy5G010210 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G010210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr5 : 9909214 .. 9909949 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAACAAGCACAACCCAACTTCATGACCAAAGCTTTTGAGAAAATTTCTAAGGGAACAATTGATCCAACCCTGTTTCAACACAAAGGAGTTGGTAATGAAGGGCAAGATAATGTTGCATTGACGCCATTGATAATCAATGGGGTAGAAGTAAAGTTGCATGAATCTGACTTGACAACCTATTGGCGATGGTTGAAGAAACAAAAAAGGCACAGGAAGAGCAAGAAAAGAAAGAAAAAGAAGAGAATGAAGAACCTGAAAGAAAAGAGAAATAAAAGAGAGGGAGGATGAGGAAGAAAGACTTAAAAGGGAGAAAATGGAAAAACAAGGCAAGAAAGATAAAGAGACATCATCATCTCCCATCATCCTAACTAAGTTTGAGAGGGTCACAAAAAAGGTCCAAGAGAAAAAGGAAAAGATGGCATATGGCCTCTTTAAACTTAAGGTCACAGTGTAGGGTGTTAAGGCCCTCGCACAAGCGAAGAAGGAAACAAAGTTAAAGGAGCGGAAAGAGCTCCTTAACAAAGTAGAAAAAGTAACCCTCTCCGTGAAGAAGGGTAAGGCAAAGAAAACTCATAGTGAAGAGTACGACAAGGAGATGGAAAAAGAATTAGAGGATGAAAGTCCCTTAGATGACGAAGTGGCCAAACCTTCAAAGAAGAAGAAGGTCACAATAAAGAAGAAGGTTTTGAACATGCAATTCGTCGAAAGGCAAGAAAGGTTCTCAAAGTGA

mRNA sequence

ATGTCGGAACAAGCACAACCCAACTTCATGACCAAAGCTTTTGAGAAAATTTCTAAGGGAACAATTGATCCAACCCTGTTTCAACACAAAGGAGTTGGTAATGAAGGGCAAGATAATGTTGCATTGACGCCATTGATAATCAATGGGGTAGAAGGTGTTAAGGCCCTCGCACAAGCGAAGAAGGAAACAAAGTTAAAGGAGCGGAAAGAGCTCCTTAACAAAGTAGAAAAAGTAACCCTCTCCGTGAAGAAGGGTAAGGCAAAGAAAACTCATAGTGAAGAGTACGACAAGGAGATGGAAAAAGAATTAGAGGATGAAAGTCCCTTAGATGACGAAGTGGCCAAACCTTCAAAGAAGAAGAAGGTCACAATAAAGAAGAAGGTTTTGAACATGCAATTCGTCGAAAGGCAAGAAAGGTTCTCAAAGTGA

Coding sequence (CDS)

ATGTCGGAACAAGCACAACCCAACTTCATGACCAAAGCTTTTGAGAAAATTTCTAAGGGAACAATTGATCCAACCCTGTTTCAACACAAAGGAGTTGGTAATGAAGGGCAAGATAATGTTGCATTGACGCCATTGATAATCAATGGGGTAGAAGGTGTTAAGGCCCTCGCACAAGCGAAGAAGGAAACAAAGTTAAAGGAGCGGAAAGAGCTCCTTAACAAAGTAGAAAAAGTAACCCTCTCCGTGAAGAAGGGTAAGGCAAAGAAAACTCATAGTGAAGAGTACGACAAGGAGATGGAAAAAGAATTAGAGGATGAAAGTCCCTTAGATGACGAAGTGGCCAAACCTTCAAAGAAGAAGAAGGTCACAATAAAGAAGAAGGTTTTGAACATGCAATTCGTCGAAAGGCAAGAAAGGTTCTCAAAGTGA

Protein sequence

MSEQAQPNFMTKAFEKISKGTIDPTLFQHKGVGNEGQDNVALTPLIINGVEGVKALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEVAKPSKKKKVTIKKKVLNMQFVERQERFSK

Homology

[Close]

BLAST of CsGy5G010210 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 8.7e-04
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 33 GNEGQDNVALTPLIINGVEGVKALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKT-- 92
          G +G+    L  + +   +G+KAL + KKE KL+E++ELLNKV+KV LSV+K K +KT  
Sbjct: 35 GEDGESRTGLLKIKVK-AQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKTFE 94

Query: 93 -HSEEY 96
           H EE+
Sbjct: 95 EHCEEF 99

[Close]

BLAST of CsGy5G010210 vs. TrEMBL
Match: tr|A0A1S3CPC6|A0A1S3CPC6_CUCME (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 33 GNEGQDNVALTPLIINGVEGVKALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKT-- 92
          G +G+    L  + +   +G+KAL + KKE KL+E++ELLNKV+KV LSV+K K +KT  
Sbjct: 35 GEDGESRTGLLKIKVK-AQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKTFE 94

Query: 93 -HSEEY 96
           H EE+
Sbjct: 95 EHCEEF 99

The following BLAST results are available for this feature:

BLAST of CsGy5G010210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465464.1	8.7e-04	46.97	PREDICTED: protein MNN4-like [Cucumis melo]	[more]

BLAST of CsGy5G010210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G010210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G010210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPC6\|A0A1S3CPC6_CUCME	5.8e-04	46.97	protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G010210.1	CsGy5G010210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G010210	CsaUNG019150	Cucumber (Chinese Long) v2	cgybcuB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G010210	Cucurbita maxima (Rimu)	cgybcmaB664
CsGy5G010210	Cucurbita maxima (Rimu)	cgybcmaB680
CsGy5G010210	Cucurbita maxima (Rimu)	cgybcmaB681
CsGy5G010210	Cucurbita moschata (Rifu)	cgybcmoB641
CsGy5G010210	Cucurbita moschata (Rifu)	cgybcmoB658
CsGy5G010210	Cucurbita moschata (Rifu)	cgybcmoB660
CsGy5G010210	Cucurbita pepo (Zucchini)	cgybcpeB656
CsGy5G010210	Cucurbita pepo (Zucchini)	cgybcpeB652
CsGy5G010210	Cucurbita pepo (Zucchini)	cgybcpeB642
CsGy5G010210	Cucumber (Chinese Long) v2	cgybcuB232
CsGy5G010210	Bottle gourd (USVL1VR-Ls)	cgyblsiB332
CsGy5G010210	Melon (DHL92) v3.5.1	cgybmeB314
CsGy5G010210	Melon (DHL92) v3.6.1	cgybmedB313
CsGy5G010210	Watermelon (Charleston Gray)	cgybwcgB370
CsGy5G010210	Watermelon (97103) v1	cgybwmB370
CsGy5G010210	Watermelon (97103) v1	cgybwmB362
CsGy5G010210	Wild cucumber (PI 183967)	cgybcpiB223
CsGy5G010210	Wild cucumber (PI 183967)	cgybcpiB235
CsGy5G010210	Silver-seed gourd	carcgybB0191
CsGy5G010210	Silver-seed gourd	carcgybB0193
CsGy5G010210	Silver-seed gourd	carcgybB0671
CsGy5G010210	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G010210	Watermelon (97103) v2	cgybwmbB376
CsGy5G010210	Wax gourd	cgybwgoB490